View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1321_low_21 (Length: 259)
Name: NF1321_low_21
Description: NF1321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1321_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 121 - 247
Target Start/End: Original strand, 12019435 - 12019561
Alignment:
| Q |
121 |
aaataagctcaaaattatgacttttagttagaatttagaatttatttaagagacaaataatgtcataatttgtttttgacacaattaaatatttgaagtc |
220 |
Q |
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| T |
12019435 |
aaataagctcaaaattatggcttttagttagaatttagaatttatttaagagacaaataatgtcataatttgtttttgacacaattaaatatttgaagtc |
12019534 |
T |
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| Q |
221 |
catggtataaaacgattgagaaatatt |
247 |
Q |
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| T |
12019535 |
catggtataaaacgactgagaaatatt |
12019561 |
T |
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Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 12019277 - 12019351
Alignment:
| Q |
30 |
ctatgtaaatttcatgattgaaagatttatatgatgtaccttgtatatacattgtatgaataattttgtaatatt |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
12019277 |
ctatgtaaatttcatgattgaaagatttatatgatgtaccctgtatatacattgtatgaataattttgtaatatt |
12019351 |
T |
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