View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1321_low_3 (Length: 765)

Name: NF1321_low_3
Description: NF1321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1321_low_3
NF1321_low_3
[»] chr5 (4 HSPs)
chr5 (29-374)||(9638638-9638982)
chr5 (555-751)||(9638258-9638454)
chr5 (426-505)||(9638504-9638583)
chr5 (452-494)||(9638381-9638423)
[»] chr1 (6 HSPs)
chr1 (259-374)||(1626663-1626776)
chr1 (580-629)||(15569580-15569629)
chr1 (452-494)||(15569581-15569623)
chr1 (583-621)||(40538796-40538834)
chr1 (216-374)||(52456365-52456523)
chr1 (580-629)||(15569725-15569774)
[»] chr2 (4 HSPs)
chr2 (216-353)||(3803998-3804138)
chr2 (580-631)||(34915232-34915284)
chr2 (584-631)||(38143052-38143099)
chr2 (251-321)||(13715777-13715847)
[»] chr3 (5 HSPs)
chr3 (580-624)||(20800992-20801036)
chr3 (580-617)||(20801136-20801173)
chr3 (580-633)||(14004704-14004757)
chr3 (251-353)||(23035269-23035372)
chr3 (125-174)||(23035459-23035507)
[»] chr7 (1 HSPs)
chr7 (251-322)||(22754434-22754505)
[»] chr4 (2 HSPs)
chr4 (268-337)||(27955143-27955212)
chr4 (580-616)||(17263674-17263710)
[»] scaffold0855 (1 HSPs)
scaffold0855 (269-374)||(1800-1900)
[»] scaffold0847 (1 HSPs)
scaffold0847 (269-374)||(1965-2065)


Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 29 - 374
Target Start/End: Complemental strand, 9638982 - 9638638
Alignment:
Q  29 agatgttaatcaaacactcagtcgtacaagtaaaaaatctccctcaactcagtcgtatgagcaagatataagttgactaagttcgaaatgtgcataaaga 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||| ||||||||    
T  9638982 agatgttaatcaaacactcagtcgtacaagtaaaaaatctccctcaactcagtcgtatgagcaagatataagttgactaagtctggaatgtacataaaga 9638883  T
Q  129 cttattttcttaataatagggtgatggaggacatggatagctgatataacacccccaacaaactggtgttaggctataactcagcctgttacttacatta 228  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9638882 cttattttcttaataataggatgatggaggacatggatagctgatataacacccccaacaaactggtgttaggctataactcagcctgttacttacatta 9638783  T
Q  229 atgatgttggtcatgatcatacatgtaatatggtagatagtgggtcaaaaatgtggcaagcaatgttagagtaggctgcttagttattctaagtttgtaa 328  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9638782 atgatgttggtcatgatcatacctgtaatatggtagataatgggtcaaaaatgtggcaagcaatgttagagtaggctgcttagttattctaattttgtaa 9638683  T
Q  329 atacctcatcttaaagattattcaaaacatacatcaaatcaaacaa 374  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  9638682 atacctcatcttaaagattattc-aaacatacatcaaatcaaacaa 9638638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 555 - 751
Target Start/End: Complemental strand, 9638454 - 9638258
Alignment:
Q  555 agaaatgagaatccacgtgtcatgattgggcaatgtcatgtgacattcccaccacaatgtcacacaagtgaaatccagtagttcacccttctacattata 654  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9638454 agaaatgagaatccacgtgtcatgattgggcaatgtcatgtgacattcccaccacaatgtcacacaagtgaaatccagtagttcacccttctacattata 9638355  T
Q  655 tagacactttttagaataatctagaacctgcacctaagaaacatagtctctttctcagcgtaatcatttgatctaaataaaagattattgtcttagt 751  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9638354 tagacactttttagagtaatctagaacctgcacctgagaaacatagtctctttctcagcgtaatcatttgatctaaataaaagattattgtcttagt 9638258  T

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Target: chr5; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 426 - 505
Target Start/End: Complemental strand, 9638583 - 9638504
Alignment:
Q  426 atgtcttcttaagtaatagttcacaaatttcacttgtgtaacattgtggtgggaatatcacatgacatttgaaacataga 505  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||    
T  9638583 atgtcttcttaagtagtagttcacaaatttcacttgtgtaacattgtggtggaaatatcacgtgacatttgacacataga 9638504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 452 - 494
Target Start/End: Original strand, 9638381 - 9638423
Alignment:
Q  452 atttcacttgtgtaacattgtggtgggaatatcacatgacatt 494  Q
    ||||||||||||| |||||||||||||||| ||||||||||||    
T  9638381 atttcacttgtgtgacattgtggtgggaatgtcacatgacatt 9638423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 5e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 259 - 374
Target Start/End: Original strand, 1626663 - 1626776
Alignment:
Q  259 tggtagatagtgggtcaaaaatgtggcaagcaatgttagagtaggctgcttagttattctaagtttgtaaatacctcatcttaaagattattcaaaacat 358  Q
    |||||||||||||||||| |||||||||||||||||||| | ||| ||||||||| |||||||| | ||||||   |||  |||||| ||||||| |||     
T  1626663 tggtagatagtgggtcaacaatgtggcaagcaatgttagcggagg-tgcttagttgttctaagtctataaatataccattgtaaaga-tattcaacacac 1626760  T
Q  359 acatcaaatcaaacaa 374  Q
    ||||||||||||||||    
T  1626761 acatcaaatcaaacaa 1626776  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 580 - 629
Target Start/End: Complemental strand, 15569629 - 15569580
Alignment:
Q  580 ttgggcaatgtcatgtgacattcccaccacaatgtcacacaagtgaaatc 629  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15569629 ttggacaatgtcatgtgacattcccaccacaatgtcacacaagtgaaatc 15569580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 452 - 494
Target Start/End: Original strand, 15569581 - 15569623
Alignment:
Q  452 atttcacttgtgtaacattgtggtgggaatatcacatgacatt 494  Q
    ||||||||||||| |||||||||||||||| ||||||||||||    
T  15569581 atttcacttgtgtgacattgtggtgggaatgtcacatgacatt 15569623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 583 - 621
Target Start/End: Original strand, 40538796 - 40538834
Alignment:
Q  583 ggcaatgtcatgtgacattcccaccacaatgtcacacaa 621  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  40538796 ggcaatgtcatgtgacatttccaccacaatgtcacacaa 40538834  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 216 - 374
Target Start/End: Original strand, 52456365 - 52456523
Alignment:
Q  216 gttacttacattaatgatgttggtcatgatcatacatg---taatatggtagatagtgggtcaaaaatgtggcaagcaatgttagagtaggctgcttagt 312  Q
    |||||||| |||| ||||||| | ||||||| ||||||   ||||||| ||||||||   |||||||  ||| || |||||||||  || | ||||||||    
T  52456365 gttacttatattagtgatgttagccatgatcttacatgatataatatgatagatagtcattcaaaaacatggtaaacaatgttagcataagttgcttagt 52456464  T
Q  313 tattctaagtttgtaaatacctcatcttaaagattattcaaaacatacatcaaatcaaacaa 374  Q
    |||||||||| | ||| || ||||||  |||||||||||  || |||||||| |||||||||    
T  52456465 tattctaagtgtataacta-ctcatcgcaaagattattc--aagatacatcacatcaaacaa 52456523  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 580 - 629
Target Start/End: Original strand, 15569725 - 15569774
Alignment:
Q  580 ttgggcaatgtcatgtgacattcccaccacaatgtcacacaagtgaaatc 629  Q
    |||| ||||||||||||||||||||  |||||||| ||||||||| ||||    
T  15569725 ttggacaatgtcatgtgacattcccgtcacaatgtgacacaagtggaatc 15569774  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 216 - 353
Target Start/End: Original strand, 3803998 - 3804138
Alignment:
Q  216 gttacttacattaatgatgttggtcatgatcatacatgt---aatatggtagatagtgggtcaaaaatgtggcaagcaatgttagagtaggctgcttagt 312  Q
    |||||||| |||| | ||||| ||||||||||| |||||   |||||||||| |||||| |||||| ||||||| | ||| || | | ||| ||||||||    
T  3803998 gttacttatattagtaatgttagtcatgatcattcatgttgaaatatggtagttagtggatcaaaattgtggcaggaaatttttggggaggttgcttagt 3804097  T
Q  313 tattctaagtttgtaaatacctcatcttaaagattattcaa 353  Q
    || ||||||| | ||||||||||||   |||||||||||||    
T  3804098 taatctaagtctataaatacctcattggaaagattattcaa 3804138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 580 - 631
Target Start/End: Original strand, 34915232 - 34915284
Alignment:
Q  580 ttgggcaatgtcatgtgacattccc-accacaatgtcacacaagtgaaatcca 631  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  34915232 ttgggcaatgtcatgtgacattccccaccacaatgtcacacaagtggaatcca 34915284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 584 - 631
Target Start/End: Original strand, 38143052 - 38143099
Alignment:
Q  584 gcaatgtcatgtgacattcccaccacaatgtcacacaagtgaaatcca 631  Q
    ||||||||||| ||||||||| |||||||||||||||| || ||||||    
T  38143052 gcaatgtcatgcgacattcccgccacaatgtcacacaactggaatcca 38143099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 251 - 321
Target Start/End: Complemental strand, 13715847 - 13715777
Alignment:
Q  251 atgtaatatggtagatagtgggtcaaaaatgtggcaagcaatgttagagtaggctgcttagttattctaag 321  Q
    ||||||||||||||| |||| | |||||| || |||| ||||||||| ||| | | |||||||||||||||    
T  13715847 atgtaatatggtagaaagtgaggcaaaaacgttgcaaacaatgttagtgtacggttcttagttattctaag 13715777  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 580 - 624
Target Start/End: Complemental strand, 20801036 - 20800992
Alignment:
Q  580 ttgggcaatgtcatgtgacattcccaccacaatgtcacacaagtg 624  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  20801036 ttgggcaatgtcatctgacattcccaccacaatgtcacacaagtg 20800992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 580 - 617
Target Start/End: Original strand, 20801136 - 20801173
Alignment:
Q  580 ttgggcaatgtcatgtgacattcccaccacaatgtcac 617  Q
    ||||||||||||||||||||||||||||||||||||||    
T  20801136 ttgggcaatgtcatgtgacattcccaccacaatgtcac 20801173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 580 - 633
Target Start/End: Complemental strand, 14004757 - 14004704
Alignment:
Q  580 ttgggcaatgtcatgtgacattcccaccacaatgtcacacaagtgaaatccagt 633  Q
    |||||||||| ||||| ||||| | |||||||||||||||||||| ||||||||    
T  14004757 ttgggcaatgacatgtaacatttctaccacaatgtcacacaagtggaatccagt 14004704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 251 - 353
Target Start/End: Complemental strand, 23035372 - 23035269
Alignment:
Q  251 atgtaatatggtagatagtgggtcaaaaatgtggcaagcaatgttagagtaggctgcttagttattctaagtttgtaaatacctcat-cttaaagattat 349  Q
    |||||||||||||||||||||| || ||| ||  ||||||| ||||  ||||| ||||| ||||||| |||| | ||||||| ||||  | |||||||||    
T  23035372 atgtaatatggtagatagtgggccataaacgttacaagcaacgttaatgtaggttgcttggttattcgaagtctataaatacgtcatggtaaaagattat 23035273  T
Q  350 tcaa 353  Q
    ||||    
T  23035272 tcaa 23035269  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 23035507 - 23035459
Alignment:
Q  125 aagacttattttcttaataatagggtgatggaggacatggatagctgata 174  Q
    |||||||||| ||||| ||||||||||||||||||||| ||||| |||||    
T  23035507 aagacttattctctta-taatagggtgatggaggacatcgatagttgata 23035459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 251 - 322
Target Start/End: Complemental strand, 22754505 - 22754434
Alignment:
Q  251 atgtaatatggtagatagtgggtcaaaaatgtggcaagcaatgttagagtaggctgcttagttattctaagt 322  Q
    |||||| |||||||||||||||  |||||||||| |||||||||||| ||||| || ||||||||| |||||    
T  22754505 atgtaaaatggtagatagtgggcgaaaaatgtggaaagcaatgttagtgtaggttgtttagttattataagt 22754434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 268 - 337
Target Start/End: Complemental strand, 27955212 - 27955143
Alignment:
Q  268 gtgggtcaaaaatgtggcaagcaatgttagagtaggctgcttagttattctaagtttgtaaatacctcat 337  Q
    ||||||||||||||||| || ||||||||| ||||| | |||||||| ||||||| | ||||||||||||    
T  27955212 gtgggtcaaaaatgtggaaaacaatgttagtgtaggttccttagttactctaagtgtataaatacctcat 27955143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 580 - 616
Target Start/End: Complemental strand, 17263710 - 17263674
Alignment:
Q  580 ttgggcaatgtcatgtgacattcccaccacaatgtca 616  Q
    |||||||||||||||||||||||||||||||||||||    
T  17263710 ttgggcaatgtcatgtgacattcccaccacaatgtca 17263674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0855 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0855
Description:

Target: scaffold0855; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 269 - 374
Target Start/End: Original strand, 1800 - 1900
Alignment:
Q  269 tgggtcaaaaatgtggcaagcaatgttagagtaggctgcttagttattctaagtttgtaaatacctcatcttaaagattattcaaaacatacatcaaatc 368  Q
    |||||||| ||||||||||| |||||||| || || |||||||||||||||||  | |||||||| |||  |||||| |||||  |||| ||||||||||    
T  1800 tgggtcaacaatgtggcaagtaatgttagtgtcgg-tgcttagttattctaagcctataaatacc-cattgtaaaga-tattc--aacacacatcaaatc 1894  T
Q  369 aaacaa 374  Q
    ||||||    
T  1895 aaacaa 1900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0847 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0847
Description:

Target: scaffold0847; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 269 - 374
Target Start/End: Original strand, 1965 - 2065
Alignment:
Q  269 tgggtcaaaaatgtggcaagcaatgttagagtaggctgcttagttattctaagtttgtaaatacctcatcttaaagattattcaaaacatacatcaaatc 368  Q
    |||||||| ||||||||||| |||||||| || || |||||||||||||||||  | |||||||| |||  |||||| |||||  |||| ||||||||||    
T  1965 tgggtcaacaatgtggcaagtaatgttagtgtcgg-tgcttagttattctaagcctataaatacc-cattgtaaaga-tattc--aacacacatcaaatc 2059  T
Q  369 aaacaa 374  Q
    ||||||    
T  2060 aaacaa 2065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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