View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1321_low_7 (Length: 339)
Name: NF1321_low_7
Description: NF1321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1321_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 310
Target Start/End: Original strand, 29143611 - 29143906
Alignment:
| Q |
16 |
atcaaaagtaaaggagattatcttttattcttaataactgtaaattatactgtatttctataattaaataaattttcatgttgcttctatttaaaattag |
115 |
Q |
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| T |
29143611 |
atcaaaagtaaaggagattatcttttattcttaataactgtgaattatactgtatttctataattaaataaattttcatgttgcttctatttaaaattag |
29143710 |
T |
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| Q |
116 |
accgagtaagggtaataatagtaggtggaataacttgtgatatttgttgagacaacttcttatcatatatggttataatgtattttcagcttttgttaag |
215 |
Q |
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| T |
29143711 |
atcgagtaagggtaataatagtaggtggaataacttgtgatatttgttgagacaacttcttatcatatatggttataatgtattttcagcttttgttaag |
29143810 |
T |
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| Q |
216 |
acaacttctcatagc-nnnnnnngtgatttcgcttaattttgtaatttcaatgcaggtggattaaatttttaaccacttacggtaacattttaagt |
310 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29143811 |
acaacttctcatagcttttttttgtgatttcgcttaattttgtaatttcaatgcaggtggattaaatttttaaccacttacggtaacattttaagt |
29143906 |
T |
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