View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13220_high_1 (Length: 469)
Name: NF13220_high_1
Description: NF13220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13220_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 28 - 112
Target Start/End: Original strand, 2479991 - 2480075
Alignment:
| Q |
28 |
aacacataatgaggttgacgttctcacattggtatttctaaagaaaggtatgaacactttgtatcctttcttcaacaataaattg |
112 |
Q |
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| T |
2479991 |
aacacataatgaggttgacgttctcacattggtatttctaaagaaaggtatgaacactttgtatcctttcttcaacaataaattg |
2480075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 246 - 375
Target Start/End: Original strand, 2480253 - 2480375
Alignment:
| Q |
246 |
ttttcacctagtatgtacctaacaaatgtgtattctcacttgatttcaaactgaatctta-ttttgtgtacaaattatgcaattctttatcttgcagtgt |
344 |
Q |
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| T |
2480253 |
ttttcacctagtatgttcctaacaaatgtgtattctcacctgatttcaaactgaatcttatttttgtgtccaaattatgcaat--------ttgcagtgt |
2480344 |
T |
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| Q |
345 |
tcaatttctcactgataaatatgtgctacaa |
375 |
Q |
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| T |
2480345 |
tcaatttctcgctgataaatatgtgctacaa |
2480375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 152
Target Start/End: Original strand, 2480138 - 2480177
Alignment:
| Q |
113 |
tgttatctcatgctacttacatgttaattttactttttgg |
152 |
Q |
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| T |
2480138 |
tgttatctcatgctatttacatgttaattttactttttgg |
2480177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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