View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13221_high_11 (Length: 350)
Name: NF13221_high_11
Description: NF13221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13221_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 16 - 332
Target Start/End: Original strand, 23330672 - 23330988
Alignment:
| Q |
16 |
atacatgtgactgtgtaagctttgcgttgtgcaccgtcgaaggttgacccttaattctgcaatttctactaaatattataatttgttgtatacgttgttt |
115 |
Q |
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| T |
23330672 |
atacatgtgactgtgtaagctttgcgttgtgcaccgtcgaaggttgacccttaattctgcaatttctactaaatattataatttgttgtatacgttgttt |
23330771 |
T |
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| Q |
116 |
tgtgaccgacgagttctttgtcctcttagaatcacattataattagtataattgttatgatgtgtactttaataagtatagttcaattgatctatgtaat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23330772 |
tgtgaccgacgagttctttgtcctcttagaatcacattataattagtataattgttatgatgtgtactttaataagtatagttcaattgatctatgtaat |
23330871 |
T |
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| Q |
216 |
tgatgattaagttagaatttaaaaatatcaagacttgtaataacatgattacaattcataataacgttacgaagttagatttctaattgttcaacgctag |
315 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23330872 |
tgatgattaagttagaatttaaaaatatgaagacttgtaataacatgattacaattcataataacgttacgaagttagatttctaattgttcaacgctag |
23330971 |
T |
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| Q |
316 |
aaccctagtgaacctag |
332 |
Q |
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||||||||||||||||| |
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| T |
23330972 |
aaccctagtgaacctag |
23330988 |
T |
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