View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13221_high_14 (Length: 254)
Name: NF13221_high_14
Description: NF13221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13221_high_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 12605400 - 12605636
Alignment:
| Q |
1 |
taactgacatgtgtcagttaactagaggtagttaaattgagaattcagttaaatcagaaaagcaaaagctctctagattcatgaaagtacaaactctatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12605400 |
taactgacatgtgtcagttaactagaggtagttaaattgagaattcagttaaatcagaaaagcaaaagctctctagattcatgaaagtacaaactctatt |
12605499 |
T |
|
| Q |
101 |
atggtatcagagcctaacgtttcggggcaccgattatttatatacacgcaccaa-cccaatagtatttggcgtgagaattcggaaaaacccaagtcccga |
199 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
12605500 |
atggtatcagagccttacgtttcggagcaccgattatttatatacacgcaccaagcccaatattatttggtgtgagaattcggaaaaagccaagtcccgc |
12605599 |
T |
|
| Q |
200 |
atagaaaatatacgactcttgatagagtggcacccct |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12605600 |
atagaaaatatacgactcttgatagagtggcacccct |
12605636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 18284081 - 18284050
Alignment:
| Q |
1 |
taactgacatgtgtcagttaactagaggtagt |
32 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
18284081 |
taactgacatgtgtcagttaactagaggtagt |
18284050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 4468773 - 4468733
Alignment:
| Q |
183 |
aaaaacccaagtcccgaatagaaaatatacgactcttgata |
223 |
Q |
| |
|
|||||||||||||||| |||||| ||||| ||||||||||| |
|
|
| T |
4468773 |
aaaaacccaagtcccgcatagaacatataggactcttgata |
4468733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 16051007 - 16051047
Alignment:
| Q |
183 |
aaaaacccaagtcccgaatagaaaatatacgactcttgata |
223 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
16051007 |
aaaaacccaagtcccacatagaaaatataggactcttgata |
16051047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 163
Target Start/End: Original strand, 25669862 - 25669926
Alignment:
| Q |
100 |
tatggtatcagagcctaacgtttcggggcaccgattatttatatacacgcaccaa-cccaatagt |
163 |
Q |
| |
|
||||||||||||||||| | || ||| || | |||||||||||||||||||||| ||||||||| |
|
|
| T |
25669862 |
tatggtatcagagcctattgatttgggtcatccattatttatatacacgcaccaagcccaatagt |
25669926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University