View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13221_high_17 (Length: 223)
Name: NF13221_high_17
Description: NF13221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13221_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 22 - 209
Target Start/End: Original strand, 19226042 - 19226229
Alignment:
| Q |
22 |
atagtagtagttttggttaaaacaacatggccaattcaactgcactttatcctcaaatctttcaccagaaagcacatacaacttccgttgaccagtgttc |
121 |
Q |
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| T |
19226042 |
atagtagtagttttggttaaaacaacatggccaattcaactgcactttatcctcgaacctttcaccagaaagcacatacaacttccgttgaccagtgttc |
19226141 |
T |
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| Q |
122 |
tcatgctggtttacaaggagagaagcttcatggttcaatgaatgatatttggaaaccatagttttgtaaaacatgttcatgaaataag |
209 |
Q |
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| T |
19226142 |
tcatgctggtttacaaggagagaagcttcatggttcaatgaatgatatttggaaaacatagttttgtaaaacatgttcatgaaataag |
19226229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 19220966 - 19220880
Alignment:
| Q |
21 |
aatagtagtagttttggttaaaacaacatggccaattcaactgcactttatcctcaaatctttcaccagaaagcacatacaacttcc |
107 |
Q |
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| T |
19220966 |
aatagttgttgttttggtcaaaaatacttggccaattcagtggcactttattctcaaatctctcaccagaaagtaaatacaacttcc |
19220880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 130 - 209
Target Start/End: Original strand, 27725063 - 27725142
Alignment:
| Q |
130 |
gtttacaaggagagaagcttcatggttcaatgaatgatatttggaaaccatagttttgtaaaacatgttcatgaaataag |
209 |
Q |
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| T |
27725063 |
gtttagaaggagacatgcttcatgatacagtgaatgatatttggaaacaatatttttgtaaaacatgttgatgaaataag |
27725142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 27596160 - 27596221
Alignment:
| Q |
148 |
ttcatggttcaatgaatgatatttggaaaccatagttttgtaaaacatgttcatgaaataag |
209 |
Q |
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| T |
27596160 |
ttcatcgtacaatgaattatatttggaaaccatatttttgtaaaacatgttcacaaaataag |
27596221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 209
Target Start/End: Original strand, 27717751 - 27717798
Alignment:
| Q |
162 |
aatgatatttggaaaccatagttttgtaaaacatgttcatgaaataag |
209 |
Q |
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| T |
27717751 |
aatgatatttggaaaccatatatttggaaaacatgttcatgaaataag |
27717798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 209
Target Start/End: Original strand, 27736311 - 27736390
Alignment:
| Q |
130 |
gtttacaaggagagaagcttcatggttcaatgaatgatatttggaaaccatagttttgtaaaacatgttcatgaaataag |
209 |
Q |
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| T |
27736311 |
gtttagaaggagacatgcttcatcatacagtgaatgatgtttggaaacaatatttttgtaaaacatgttgatgaaataag |
27736390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 27717650 - 27717708
Alignment:
| Q |
49 |
tggccaattcaactgcactttatcctcaaatctttcaccagaaagcacatacaacttcc |
107 |
Q |
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| T |
27717650 |
tggccagttcaattgcactttattctcaaatctctcaccagaaagcaaatataacttcc |
27717708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 27590112 - 27590173
Alignment:
| Q |
148 |
ttcatggttcaatgaatgatatttggaaaccatagttttgtaaaacatgttcatgaaataag |
209 |
Q |
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||||| || |||||||| |||||||||||||||| | |||||||||||||||| ||||||| |
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| T |
27590112 |
ttcatcgtacaatgaattatatttggaaaccatattattgtaaaacatgttcacaaaataag |
27590173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 14682721 - 14682773
Alignment:
| Q |
157 |
caatgaatgatatttggaaaccatagttttgtaaaacatgttcatgaaataag |
209 |
Q |
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|||||||||||||||| |||| ||| ||||||||||||||||||| ||||||| |
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| T |
14682721 |
caatgaatgatatttgaaaacaatatttttgtaaaacatgttcataaaataag |
14682773 |
T |
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