View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13221_high_2 (Length: 569)
Name: NF13221_high_2
Description: NF13221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13221_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 21 - 563
Target Start/End: Complemental strand, 44715008 - 44714466
Alignment:
| Q |
21 |
gctggcatattgtgggcgggttatccaggccaagctggtggtgctgcaattgctgacattttatttggaactgctagcccaggtttgtcataaaacttga |
120 |
Q |
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| T |
44715008 |
gctggcatattgtgggcgggttatccaggccaagctggtggtgctgcaattgctgacattttatttggaactgctagcccaggtttgtcataaaacttga |
44714909 |
T |
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| Q |
121 |
aaaaattgaatgaattcccaattgcaaatagcctataaactaatacaattattacactattgtgttttactatcaggaggcaagctaccagtgacatggt |
220 |
Q |
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| T |
44714908 |
aaaaattgaatgaattcccaattgcaaatagcctataaactaatacaattattacactattgtgttttactatcaggaggcaagctaccagtgacatggt |
44714809 |
T |
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| Q |
221 |
acccacaagagtacctaaaaaacttggccatgacaaatatggcaatgagaccaagcaaaatagggtacccaggaagaacatatagattctacaagggacc |
320 |
Q |
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| T |
44714808 |
acccacaagagtacctaaaaaacttggccatgacaaatatggcaatgagaccaagcaaaatagggtacccaggaagaacatatagattctacaagggacc |
44714709 |
T |
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| Q |
321 |
agttgtatatccatttggacatggattaacatacacacattttgttcacgaattatctagtgcacccacggtggtgtcagttccggtccatggtcaccga |
420 |
Q |
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| T |
44714708 |
agttgtatatccatttggacatggattaacatacacacattttgttcacgaattatctagtgcacccacagtggtgtcagttccagtccatggtcaccga |
44714609 |
T |
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| Q |
421 |
catggcaacaacacaaacatttcaaacaaagcaattagagtgacacatgcaagatgtggcaaactctcaattgcccttcacgttgatgtaaaaaatgtgg |
520 |
Q |
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| T |
44714608 |
catggcaacaacacaaacatttcaaacaaagcaattagagtgacacatgcaagatgtggcaaactctcaattgcccttcacgttgatgtaaaaaatgtgg |
44714509 |
T |
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| Q |
521 |
gatctagagatggcactcacaccttgttagtgttctctgctcc |
563 |
Q |
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| T |
44714508 |
gatctagagatggcactcacaccttgttagtgttctctgctcc |
44714466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 193 - 557
Target Start/End: Original strand, 39090935 - 39091296
Alignment:
| Q |
193 |
tcaggaggcaagctaccagtgacatggtacccacaagagtacctaaaaaacttggccatgacaaatatggcaatgagaccaagcaaa---atagggtacc |
289 |
Q |
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| T |
39090935 |
tcaggagctaagctacctatgacatggtacccacaaggttacctcaaaaacttggcaatgacaaatatggcaatgagaccaagctcatccacagggtacc |
39091034 |
T |
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| Q |
290 |
caggaagaacatatagattctacaagggaccagttgtatatccatttggacatggattaacatacacacattttgttcacgaattatctagtgcacccac |
389 |
Q |
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| T |
39091035 |
ctgggagaacctatcgtttttacaacggccctgtggtatatccatttggttacggattatcttacacaaactttgttcacacattagctagtgcaccaaa |
39091134 |
T |
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| Q |
390 |
ggtggtgtcagttccggtccatggtcaccgacatggcaacaacacaaacatttcaaacaaagcaattagagtgacacatgcaagatgtggcaaactctca |
489 |
Q |
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| T |
39091135 |
agtggtgtcagttccagtagacggacaccgccgtggaaacagctcaaaca----aagc--agcaattagagtgacacatgcacgatgtggcaagctttca |
39091228 |
T |
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| Q |
490 |
attgcccttcacgttgatgtaaaaaatgtgggatctagagatggcactcacaccttgttagtgttctc |
557 |
Q |
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| T |
39091229 |
attagacttgacattgatgttaaaaacgttggttcaaaagatggtactaacactttgttggtgttctc |
39091296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 108
Target Start/End: Original strand, 39090414 - 39090498
Alignment:
| Q |
24 |
ggcatattgtgggcgggttatccaggccaagctggtggtgctgcaattgctgacattttatttggaactgctagcccaggtttgt |
108 |
Q |
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| T |
39090414 |
ggcattttgtgggctggttatcctggtcaagccggtggtgctgccattgcggatatattgtttggaaccactaacccaggtttgt |
39090498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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