View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13221_high_5 (Length: 409)
Name: NF13221_high_5
Description: NF13221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13221_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 2e-87; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 29246192 - 29245988
Alignment:
| Q |
1 |
tatttgagccaagctgaattcatcttggctttcaacatggggggcccacacgtttataatagcctgtgctccatagtatatatcccctctcacatatcca |
100 |
Q |
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||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29246192 |
tatttgacccaagctgaattcatttgggctttcaacatggggggcccacacgtttattatagcctgtgctccatagtatatatcccctctcacaaatcca |
29246093 |
T |
|
| Q |
101 |
actgaatgctatgcagtgtggagcaatttgttatcattggttagcatataaataaatgaaatcaaaatttagaacatacttttttgtacagttaatgcgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||| |
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| T |
29246092 |
actgaatgctatgcagtgtggagcaatttgttatcattggttagcatataaataaatgaaatcaaaatttagaccatacatttttgtac----aatgcgt |
29245997 |
T |
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| Q |
201 |
aaggagact |
209 |
Q |
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||||||||| |
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| T |
29245996 |
aaggagact |
29245988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 319 - 391
Target Start/End: Complemental strand, 29245873 - 29245801
Alignment:
| Q |
319 |
tttgagagacaaaatatataagtttctatgattgcataccagatgtccattttgaattgagtccgttctaaat |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
29245873 |
tttgagagacaaaatatataagtttctatgattgcataccagatgtccattttgaattgtgtccgttctaaat |
29245801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 29254427 - 29254311
Alignment:
| Q |
2 |
atttgagccaagctgaattcatcttggctttcaacatggggggcccacacgtttataatagcctgtgctccatagtatatatcccctctcacatatccaa |
101 |
Q |
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| T |
29254427 |
atttgtgccaagcttaattcatctaggttttcaacatggggggcccacacatttatggtagcctgtgctccatggtatctatctccagtcacagacccaa |
29254328 |
T |
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| Q |
102 |
ctgaatgctatgcagtg |
118 |
Q |
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|||||||| ||||||| |
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| T |
29254327 |
ttgaatgctgtgcagtg |
29254311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 29364776 - 29364704
Alignment:
| Q |
2 |
atttgagccaagctgaattcatcttggctttcaacatggggggcccacacgtttataatagcctgtgctccat |
74 |
Q |
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|||||||||||||||||||||| | | ||||| || |||||||||||||||||||| |||||| |||||||| |
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| T |
29364776 |
atttgagccaagctgaattcatttggactttccacttggggggcccacacgtttattgtagcctttgctccat |
29364704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 29224471 - 29224386
Alignment:
| Q |
2 |
atttgagccaagctgaattcatcttggctttcaacatggggggcccacacgtttataatagcctgtgctccatagtatatatcccc |
87 |
Q |
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|||||||||||||||||||||| ||||||| ||||| |||||||||||| |||| |||||| ||| |||| ||| |||||||| |
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| T |
29224471 |
atttgagccaagctgaattcattagggctttccacatgcggggcccacacgcttatggtagcctttgcgccatggtagatatcccc |
29224386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 29213796 - 29213910
Alignment:
| Q |
1 |
tatttgagccaagctgaattcatcttggctttcaacatggggggcccacacgtttataatagcctgtgctccatagtatatatcccctctcacatatcca |
100 |
Q |
| |
|
|||||||| ||||||||||||| | | ||||| || || ||| ||||||| ||||| |||| | ||||||||| || |||||| |||||||||||| |
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| T |
29213796 |
tatttgagataagctgaattcatatggactttccacttgtgggacccacacatttatgctagcttttgctccataatactcatccccactcacatatcca |
29213895 |
T |
|
| Q |
101 |
actgaatgctatgca |
115 |
Q |
| |
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|||| ||||| |||| |
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|
| T |
29213896 |
actgcatgctgtgca |
29213910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 10 - 110
Target Start/End: Original strand, 14496644 - 14496744
Alignment:
| Q |
10 |
caagctgaattcatcttggctttcaacatggggggcccacacgtttataatagcctgtgctccatagtatatatcccctctcacatatccaactgaatgc |
109 |
Q |
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|||||||||||||| |||| || | ||| | ||||||||||||||||| |||||| ||||||||||||| || || ||||||||||||||| |||| |
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| T |
14496644 |
caagctgaattcatattggtttgctacacgtggggcccacacgtttatgctagcctttgctccatagtattgatttccagtcacatatccaactgcatgc |
14496743 |
T |
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| Q |
110 |
t |
110 |
Q |
| |
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| |
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|
| T |
14496744 |
t |
14496744 |
T |
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