View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13221_high_8 (Length: 377)
Name: NF13221_high_8
Description: NF13221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13221_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 11 - 361
Target Start/End: Complemental strand, 11351851 - 11351501
Alignment:
| Q |
11 |
atgaaacgaaaaagaagttaataattcaactcaacttcttgtgatacctaccattcacatgctattttgcacataaagaagttnnnnnnncctgtcaaat |
110 |
Q |
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| T |
11351851 |
atgaaacgaaaaagaagttaataattcaactcaacttcttgtgataactaccattcacatgctattttgcacataaagaagttaaaaaaacctgtcaaat |
11351752 |
T |
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| Q |
111 |
aatcattcacggagtcgtagaatgattcatttgtagaataggagaaaccaacaccagcaggcgattccaagtatagcatatttgcctctgcaacaagtag |
210 |
Q |
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| T |
11351751 |
aatcgttcacggagtcgtagaatgattcatttgtagaataggagaaaccaacaccagcaggcgattccaagtatagcatatttgcctctgcaacaagtag |
11351652 |
T |
|
| Q |
211 |
gaaacagaaagcaatttagagtaattaagcacaaaagggttatcaaaattcaactgaaaatacaacaaaattgcgtagtgtttggattacctttgttcca |
310 |
Q |
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| T |
11351651 |
gaaacagaaagcaatttagagtaattaagcataaaagggttatcaaaattcaactaaaaatacaacaaaattgcgtagtgcttggattacctttgttcca |
11351552 |
T |
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| Q |
311 |
actgtaatcatttttaataagaccatttttagttggtttgaatggaccatg |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11351551 |
actgtaatcatttttaataagaccatttttagttggtttgaatggaccatg |
11351501 |
T |
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