View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13221_high_9 (Length: 377)
Name: NF13221_high_9
Description: NF13221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13221_high_9 |
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| [»] scaffold0415 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 13212364 - 13212184
Alignment:
| Q |
20 |
agcagcagaaccagcaacagcaacaacttgtagcagatcctaatgcttcatcacttttccatggagttcctcaaaatcttctcaattcatgccaattacc |
119 |
Q |
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| T |
13212364 |
agcagcagaaccagcaacagcaacaacttgtagcagatcctaatgcttcatcacttttccatggagttcctcaaaatcttctcaattcatgccaattacc |
13212265 |
T |
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| Q |
120 |
agctgaaggttattggggtggaagtgctcgtcctcctttttaaccaaaaatgttattcacttaatcacttttctcatcatg |
200 |
Q |
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| T |
13212264 |
agctgaaggttattggggtggaagtgctcgtcctcctttttaaccaaaaatgttattcacttaatcacttttctcatcatg |
13212184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 280 - 367
Target Start/End: Complemental strand, 13212103 - 13212016
Alignment:
| Q |
280 |
atctatcacttgttcattctccttataacttagtttaaattgaagacttttctttgatcatggtattaagttgactacttgatgatgt |
367 |
Q |
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| T |
13212103 |
atctatcacttgttcattctccttataacttagtttaaattgaagacttttctttgatcatggtattaagttgactacttgatgatgt |
13212016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0415
Description:
Target: scaffold0415; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 13478 - 13555
Alignment:
| Q |
83 |
gagttcctcaaaatcttctcaattcatgccaattaccagctgaaggttattggggtggaagtgctcgtcctccttttt |
160 |
Q |
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| T |
13478 |
gagttcttcaaaattttcacaattcataccaattactacatgaaggttattggtgtggaagtgctcgtcctccatttt |
13555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 29846011 - 29845934
Alignment:
| Q |
83 |
gagttcctcaaaatcttctcaattcatgccaattaccagctgaaggttattggggtggaagtgctcgtcctccttttt |
160 |
Q |
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| T |
29846011 |
gagttcttcaaaattttcacaattcataccaattactacatgaaggttattggtgtggaagtgctcgtcctccatttt |
29845934 |
T |
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