View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13221_low_1 (Length: 781)
Name: NF13221_low_1
Description: NF13221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13221_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 707; Significance: 0; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 707; E-Value: 0
Query Start/End: Original strand, 18 - 765
Target Start/End: Complemental strand, 39572556 - 39571817
Alignment:
| Q |
18 |
cacagactatgattttgtaagcttgaagagtggtaggaaaattttgcaatgttttctaataataattaatgtacattatcacaactagtgagtttaatta |
117 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39572556 |
cacagactatgattttgtaagcttg--------taggaaaattttgcaatgttttctaataataattaatgtacattatcacaactagtgagtttaatta |
39572465 |
T |
|
| Q |
118 |
gataagaatgccaacagagggttctagttttattgatggtgtagtggaagccagcattcaagggttttagttagtacaaaaaccttggttattctaatat |
217 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39572464 |
gataagaatgccaactgagggttctagttttattgatggtgtagtggaagccagcattcaagggttttagttagtacaaaaaccttggttattctaatat |
39572365 |
T |
|
| Q |
218 |
tacttttggtgtcccagttatggattgcattaagatactgtggattcatagcccaataccaaatcagactaacaataggaaaattggaaaatctagcctt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39572364 |
tacttttggtgtcccagttatggattgcattaagatactgtggattcataacccaataccaaatcagactaacaataggaaaattggaaaatctagcctt |
39572265 |
T |
|
| Q |
318 |
tcaagattctaaactctaaaggttttctacaataagatataatattcaacacaatctcatgtgcatgatataagattaagttggtagtaatatattcgca |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39572264 |
tcaagattctaaactctaaaggttttctacaataagatataatattcaacacaatctcatgtgcatgatataagattaagttggtagtaatatattcgca |
39572165 |
T |
|
| Q |
418 |
aaatgaacaactgagatactggacaaattttatattagtgttcaaggataagagcagcttcctgtaaagcatttccaatttactttttcaacactatata |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39572164 |
aaatgaacaactgagatactggacaaattttatattagtgttcaaggataagagcagcttcctgtaaagcatttccaatttactttttcaacactatata |
39572065 |
T |
|
| Q |
518 |
atacatcacctacaacaattcaaactcaaaccaacctttttcatattcttaccttcaatttcctctcttttttctagctaaaacacataactagacaaat |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39572064 |
atacatcacctacaacaattcaaactcaaaccaacctttttcatattcttaccttcaatttcctctcttttttctagctaaaacacataactagacaaat |
39571965 |
T |
|
| Q |
618 |
tcctaactagctatactctcaataactcaatggatccatctcatataactgcttatgtaaatttcagctgcgaactgagaataatacaagctcgtaacat |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39571964 |
tcctaactagctatactctcaataactcaatggatccatctcatataactgcttatgtaaatttcagctgcgaactgagaataatacaagctcgtaacat |
39571865 |
T |
|
| Q |
718 |
cgaattcatcaaatccacgaagaacttatttgcaaggttgtatcttcc |
765 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
39571864 |
cgaattcatcaagtccacgaagaacttatttgcaaggttgtatcttcc |
39571817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 33 - 552
Target Start/End: Complemental strand, 39562361 - 39561835
Alignment:
| Q |
33 |
tgtaagcttgaagagtggtaggaaaattttgcaatgttttctaataataattaatgtacattatcacaactagtgagtttaattagataagaatgccaac |
132 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39562361 |
tgtaagcttgatgagtggtaggaaaattttgcaatgttttctaataataattaatgtacattatcacaactagtgagtttaattagataagaatgccaac |
39562262 |
T |
|
| Q |
133 |
agagggttctagttttattgatgg-tg-tagtggaagccagcattcaagggttttagttagtacaaaaaccttggttattctaatattacttttggtgtc |
230 |
Q |
| |
|
||||||||||||||||||||||| || | | || ||||||||||||| |||||| ||||||||||||||| |||||||||| |||||||||| ||| |
|
|
| T |
39562261 |
tgagggttctagttttattgatggctgccaattgaggccagcattcaagaactttagtcagtacaaaaaccttgcttattctaatgttacttttggggtc |
39562162 |
T |
|
| Q |
231 |
ccagttatggattgcattaagatactgtggattcatagcccaataccaaatcagactaacaataggaaaattggaaaatctagcctttcaagattctaaa |
330 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| || ||||||||||||| |||||||| |||| |
|
|
| T |
39562161 |
ccagttatggattgcattaagatactgtggattcataaaccaataccatatcagactaacaagagccaaattggaaaatccagcctttcgagat------ |
39562068 |
T |
|
| Q |
331 |
ctctaaaggttttctacaataagatataatattcaacacaatctcatgtgcatgatataagattaagttggtagtaatatattcgcaaaatgaacaactg |
430 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||||| ||||||| | |||||||||| ||||| |||||||||| ||||| | ||||||| |
|
|
| T |
39562067 |
-tctaaaggttttctttaataagatataatcttcaacacaatctcacgtgcatggtttaagattaagatggtattaatatattcacaaaaggcacaactg |
39561969 |
T |
|
| Q |
431 |
agatactggacaaattttata------------ttagtgttcaaggataagagcagcttcctgtaaagcatttccaatttactttttcaacactatataa |
518 |
Q |
| |
|
||||| |||| ||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
39561968 |
agatattggatcaattttatactatacactatgttagtgctcaaggataagagcagcttcctggaaagcatttccaatttaccttttccacactatataa |
39561869 |
T |
|
| Q |
519 |
tacatcacctacaacaattcaaactcaaaccaac |
552 |
Q |
| |
|
| |||||| |||||||| |||||||||||||||| |
|
|
| T |
39561868 |
tgcatcacatacaacaactcaaactcaaaccaac |
39561835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 18 - 548
Target Start/End: Complemental strand, 39567053 - 39566516
Alignment:
| Q |
18 |
cacagactatgattttgtaagcttgaagagtggtaggaaaattttgca-atgttttctaataataattaatgtacattatcacaacta-gtgagtttaat |
115 |
Q |
| |
|
|||||||||| ||||||||||| | |||||||||||||||| | | |||||||| || ||||| |||||||||||| ||||||| ||||||||||| |
|
|
| T |
39567053 |
cacagactatatatttgtaagcttaatgagtggtaggaaaattccgtacatgttttcaaa--ataat-aatgtacattattacaactaagtgagtttaat |
39566957 |
T |
|
| Q |
116 |
tagataagaatgccaacagagggttctagttttattgatgg-tgt-agtggaagccagcattcaagggttttagttagtacaaaaaccttggttattcta |
213 |
Q |
| |
|
|||||| ||||||||| |||| |||||| ||||||||||| ||| | | || |||||||||||| ||||||| ||||||||||||||| |||||||| |
|
|
| T |
39566956 |
cagataaaaatgccaactgagg-ttctagctttattgatggctgtcaattgataccagcattcaagaattttagtcagtacaaaaaccttgcttattcta |
39566858 |
T |
|
| Q |
214 |
atattacttttggtgtcccagttatggattgcattaagatactgtggattcatagcccaataccaaatcagactaacaataggaaaattggaaaatctag |
313 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||| || |||||||||||||||| |
|
|
| T |
39566857 |
atgttacttttggggtcccagttatggattgcattaagatactgtggattcataacccaataccatatcagaataacaagagccaaattggaaaatctag |
39566758 |
T |
|
| Q |
314 |
cctttcaagattctaaactctaaaggttttctacaataagatataatattcaacacaatctcatgtgcatgatataagattaagttggtagtaatatatt |
413 |
Q |
| |
|
|||||| |||| |||||||||||||| ||||||||||||| ||| |||||||||||||||||| | |||||||||| ||||| ||||||||| |
|
|
| T |
39566757 |
cctttcgagat-------tctaaaggttttctttaataagatataatcttctacacaatctcatgtgcatagtttaagattaagatggtattaatatatt |
39566665 |
T |
|
| Q |
414 |
cgcaaaatgaacaactgagatactggacaaattttata------------ttagtgttcaaggataagagcagcttcctgtaaagcatttccaatttact |
501 |
Q |
| |
|
| |||| | |||||| ||||| |||| ||||||||| |||||| ||||| ||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
39566664 |
cacaaagagcacaacttagatattggatcaattttatataatacactatgttagtgctcaagaataagagcagcttcctggaaagcatttccagtttact |
39566565 |
T |
|
| Q |
502 |
ttttcaacactatataatacatcacctaca--acaattcaaactcaaac |
548 |
Q |
| |
|
|||| |||||||||||||||||| |||| |||| |||||||||||| |
|
|
| T |
39566564 |
ttttgcacactatataatacatcatatacaacacaactcaaactcaaac |
39566516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 483 - 765
Target Start/End: Original strand, 39584830 - 39585112
Alignment:
| Q |
483 |
aaagcatttccaatttactttt-tcaacactatataatacatcacctacaacaattcaaactcaaaccaacctttttcatat--tcttaccttcaatttc |
579 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||||||| |||||| |||||||||||| |||| || |||| ||||| ||| |||||| |
|
|
| T |
39584830 |
aaagcatttccaatttacttttctcaactctatataatacatcactagcaacaactcaaactcaaacaaaccacttcaatatattcttagctttaatttc |
39584929 |
T |
|
| Q |
580 |
ctctcttttttctagctaaaacacataactagacaaat--tcctaactagctatactctcaataactcaatggatccatctcatataactgcttatgtaa |
677 |
Q |
| |
|
||||| |||| ||| || |||||||||||||||| || ||||||||| ||||||||| |||||||||||||| |||||| | ||||||| || |
|
|
| T |
39584930 |
ctctcctttt-ctaactgcaacacataactagacacatattcctaacta----tactctcaaattttcaatggatccatcccatataccagcttatgcaa |
39585024 |
T |
|
| Q |
678 |
atttcagctgcgaactgagaataatacaagctcgtaacatcgaattcatcaaatccacgaagaacttatttgcaaggttgtatcttcc |
765 |
Q |
| |
|
| |||||||| |||||||||||||||||||| | |||| |||||||||||||||||||| ||||| ||| |||||||||||||||| |
|
|
| T |
39585025 |
acttcagctgtgaactgagaataatacaagccagaaacactgaattcatcaaatccacgaaaaacttgttttcaaggttgtatcttcc |
39585112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 444 - 765
Target Start/End: Complemental strand, 39569338 - 39569000
Alignment:
| Q |
444 |
attttatattagtgttcaaggataagagcagcttcctgtaaagcatttccaatttact-------ttttcaacactatataatacatcaccta--caac- |
533 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||| || ||||||||||| ||||| | ||||| ||||||||||||||||||| || ||| |
|
|
| T |
39569338 |
attttatattagtgctcaaggataagagctccttcatggaaagcatttccgatttaattaattacttttccacactatataatacatcacataggaaacc |
39569239 |
T |
|
| Q |
534 |
---aattcaaactcaaaccaa---cctttttcatattc-ttaccttcaatttcctctct-tttttctagctaaaacacataactagacaaattcctaact |
625 |
Q |
| |
|
|| ||||||||||| ||| | || |||||||| ||| ||| ||||||||||| |||||||||||| ||||||||| ||||||||||||||| | |
|
|
| T |
39569238 |
tcaaactcaaactcaaaacaaacccattaatcatattctttagctttcatttcctctctctttttctagctacaacacataattagacaaattcctaa-t |
39569140 |
T |
|
| Q |
626 |
agctatactctcaataactcaatggatccatctcatataactgcttatgtaaatttcagctgcgaactgagaataatacaagctcgtaacatcgaattca |
725 |
Q |
| |
|
|||| ||||||||| ||||||||||||| |||||| ||||||||| ||| |||||||| ||||| |||||||||||||| || || | |||| |
|
|
| T |
39569139 |
tgctaaactctcaatttttcaatggatccattccatatacctgcttatgcaaacttcagctgtgaactaagaataatacaagcccgaaatgttgaatctg |
39569040 |
T |
|
| Q |
726 |
tcaaatccacgaagaacttatttgcaaggttgtatcttcc |
765 |
Q |
| |
|
|||| |||||||| ||||| |||||||||||||||||||| |
|
|
| T |
39569039 |
tcaagtccacgaaaaacttgtttgcaaggttgtatcttcc |
39569000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 598 - 765
Target Start/End: Complemental strand, 39566506 - 39566339
Alignment:
| Q |
598 |
aaacacataactagacaaattcctaactagctatactctcaataactcaatggatccatctcatataactgcttatgtaaatttcagctgcgaactgaga |
697 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||| || ||||||||||| || ||| ||||||||| ||| ||||| | ||||||||| |
|
|
| T |
39566506 |
aaacatataactagacaaattcctatttagctatactctcaatttttcgatggatccatcccacatatctgcttatgcaaacttcagttttgaactgaga |
39566407 |
T |
|
| Q |
698 |
ataatacaagctcgtaacatcgaattcatcaaatccacgaagaacttatttgcaaggttgtatcttcc |
765 |
Q |
| |
|
|| || ||||| || || || |||| | ||||||| ||||| ||||||||||||||||| |||||||| |
|
|
| T |
39566406 |
atcattcaagcccgaaatattgaatccgtcaaatctacgaaaaacttatttgcaaggttatatcttcc |
39566339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 647 - 765
Target Start/End: Original strand, 39574800 - 39574918
Alignment:
| Q |
647 |
atggatccatctcatataactgcttatgtaaatttcagctgcgaactgagaataatacaagctcgtaacatcgaattcatcaaatccacgaagaacttat |
746 |
Q |
| |
|
|||||||||||| |||| || ||||||| || ||||| || ||| ||||| ||||||||||||| ||||||||||||||||| |||||||| ||||| | |
|
|
| T |
39574800 |
atggatccatcttatatgtcttcttatgttaacttcagttgtgaattgagattaatacaagctcgaaacatcgaattcatcaagtccacgaaaaacttgt |
39574899 |
T |
|
| Q |
747 |
ttgcaaggttgtatcttcc |
765 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
39574900 |
ttgcaaggttgtatcttcc |
39574918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 348 - 520
Target Start/End: Complemental strand, 39560741 - 39560557
Alignment:
| Q |
348 |
aataagatataatattcaacacaatctcatgtgcatgatataagattaagttggtagtaatatattcgcaaaatgaacaactgagatactggacaaattt |
447 |
Q |
| |
|
||||| ||||||| ||||||| ||||| ||||||||||| |||| |||||||||| |||||||||| ||||| | ||||||||||||||||| ||||| |
|
|
| T |
39560741 |
aataatatataatcttcaacataatctgatgtgcatgattcaagaataagttggtattaatatattcacaaaaggcacaactgagatactggatcaattt |
39560642 |
T |
|
| Q |
448 |
tata------------ttagtgttcaaggataagagcagcttcctgtaaagcatttccaatttactttttcaacactatataata |
520 |
Q |
| |
|
|||| ||||||||||| ||||||| || |||| || ||||||||||| |||||||||||| |||||| |||||| |
|
|
| T |
39560641 |
tatacaatatactatgttagtgttcaaagataagatcaacttcatggaaagcatttcctatttactttttccacactacataata |
39560557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 631 - 765
Target Start/End: Original strand, 39581339 - 39581473
Alignment:
| Q |
631 |
tactctcaataactcaatggatccatctcatataactgcttatgtaaatttcagctgcgaactgagaataatacaagctcgtaacatcgaattcatcaaa |
730 |
Q |
| |
|
|||||||||| ||||||||||||| || ||| ||||||||| ||| ||||| | ||||||||||| || ||||| || || || |||| | ||||| |
|
|
| T |
39581339 |
tactctcaatttttcaatggatccatgccacatatctgcttatgcaaacttcagttttgaactgagaatcattcaagcccgaaatattgaatccgtcaaa |
39581438 |
T |
|
| Q |
731 |
tccacgaagaacttatttgcaaggttgtatcttcc |
765 |
Q |
| |
|
||||| || ||||||||||| ||||| |||||||| |
|
|
| T |
39581439 |
tccacaaaaaacttatttgctaggttatatcttcc |
39581473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 336 - 436
Target Start/End: Original strand, 39584656 - 39584756
Alignment:
| Q |
336 |
aaggttttctacaataagatataatattcaacacaatctcatgtgcatgatataagattaagttggtagtaatatattcgcaaaatgaacaactgagata |
435 |
Q |
| |
|
|||||||||| | ||| ||||||| || |||||||||| ||| ||||||| ||||||||||||||| |||||||| ||||| | |||||||||||| |
|
|
| T |
39584656 |
aaggttttctttagtaaaatataatcttgaacacaatctaatgcgcatgatttaagattaagttggtgtccatatattcacaaaaggcacaactgagata |
39584755 |
T |
|
| Q |
436 |
c |
436 |
Q |
| |
|
| |
|
|
| T |
39584756 |
c |
39584756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 483 - 548
Target Start/End: Original strand, 39581184 - 39581249
Alignment:
| Q |
483 |
aaagcatttccaatttactttttcaacactatataatacatcacctacaacaattcaaactcaaac |
548 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||| |||| | |||||||| | |||||||||| |
|
|
| T |
39581184 |
aaagcatttccacattactttttccacactatataatgcatcgcatacaacaacttaaactcaaac |
39581249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 297 - 437
Target Start/End: Original strand, 39580993 - 39581135
Alignment:
| Q |
297 |
aaaattggaaaatctagcctttcaagattctaaactctaaaggttttctacaataagatata--atattcaacacaatctcatgt-------gcatgata |
387 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||| |||||| |||||| |||| || |||||||||||||||||| ||||||| |
|
|
| T |
39580993 |
aaaattgtaaaatctagcctttcgagattctaaact-------ttttctttaataaggtatatgatcttcaacacaatctcatgtgcaatgtgcatgatt |
39581085 |
T |
|
| Q |
388 |
taagattaagttggtagtaatatattcgcaaaatgaacaactgagatact |
437 |
Q |
| |
|
|| |||||||||||| |||||||| | ||||| | |||||||||||||| |
|
|
| T |
39581086 |
caatattaagttggtattaatatatgcacaaaaagcacaactgagatact |
39581135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 644 - 729
Target Start/End: Complemental strand, 39561751 - 39561666
Alignment:
| Q |
644 |
tcaatggatccatctcatataactgcttatgtaaatttcagctgcgaactgagaataatacaagctcgtaacatcgaattcatcaa |
729 |
Q |
| |
|
|||||||||||||| | | | |||| |||| ||| ||||| || |||||||||||||| ||||| || ||||| ||||||||||| |
|
|
| T |
39561751 |
tcaatggatccatcgaaaacacctgcatatgcaaacttcagttgtgaactgagaataattcaagcacgaaacattgaattcatcaa |
39561666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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