View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13221_low_14 (Length: 255)
Name: NF13221_low_14
Description: NF13221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13221_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 19225467 - 19225231
Alignment:
| Q |
1 |
catggactaagctcttcgatgttggacccttatctgacatcaagcatcctatcgatcttatcggagcatggaagaagggtgatatacttttcagaaatga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19225467 |
catggactaagctcttcgatgttggacccttatctgacatcaagcatcctatcgatcttatcggagcatggaagaagggtgatatacttttcagaaatga |
19225368 |
T |
|
| Q |
101 |
tgataatgaattagcttgccttgatttaactactggagcaattaagaaaattggtgttaaaacaagttctcaggtaataacttatacaaaaacattctta |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
19225367 |
tgataatgaattattttgccttgatttaactactggagcaattgagaaaactggtgttaaaacaggttctcaggtaataacttatacaaaaacattctta |
19225268 |
T |
|
| Q |
201 |
tgattggaggaataaataaatatttgttttgtggcct |
237 |
Q |
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|||||| |||||||||||||||||||||||||||||| |
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| T |
19225267 |
tgattgaaggaataaataaatatttgttttgtggcct |
19225231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 19219210 - 19218974
Alignment:
| Q |
1 |
catggactaagctcttcgatgttggacccttatctgacatcaagcatcctatcgatcttatcggagcatggaagaagggtgatatacttttcagaaatga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19219210 |
catggactaagctcttcgatgttggacccttatctgacatcaagcatcctatcgatcttatcggagcatggaagaagggtgatatacttttcagaaatga |
19219111 |
T |
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| Q |
101 |
tgataatgaattagcttgccttgatttaactactggagcaattaagaaaattggtgttaaaacaagttctcaggtaataacttatacaaaaacattctta |
200 |
Q |
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| T |
19219110 |
tgataaagaattaatttgccttgatttaactactggagcaattaagaaaaatggtgttaaaacaggttctaaggtaataacttatacaaaaacattctta |
19219011 |
T |
|
| Q |
201 |
tgattggaggaataaataaatatttgttttgtggcct |
237 |
Q |
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|||||| |||||||||||||||||||||||||||||| |
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| T |
19219010 |
tgattgaaggaataaataaatatttgttttgtggcct |
19218974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 19221556 - 19221594
Alignment:
| Q |
1 |
catggactaagctcttcgatgttggacccttatctgaca |
39 |
Q |
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|||||||||||||||| ||||||||||||||||| |||| |
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| T |
19221556 |
catggactaagctctttgatgttggacccttatccgaca |
19221594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 27589366 - 27589215
Alignment:
| Q |
1 |
catggactaagctcttcgatgttggacccttatctgacatcaagcatcctatcgatcttatcggagcatggaagaagggtgatatacttttcagaaatga |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| ||| || | |||| |||||| || |||||||||||||| |||| | ||| || |
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| T |
27589366 |
catggattaagctcttcgatgttggacccttatctgacattaag--------cggt-ttattggagcaggggagaagggtgatatattttttaaaaaaga |
27589276 |
T |
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| Q |
101 |
tgataatgaattagcttgccttgatttaactactggagcaattaagaaaattggtgttaaa |
161 |
Q |
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|||| ||||| |||| | |||||||| ||||| |||| |||| |||| |||||||||||| |
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| T |
27589275 |
tgatgatgaactagcctatcttgatttgactaccggagtaattcagaacattggtgttaaa |
27589215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 156
Target Start/End: Complemental strand, 27735531 - 27735434
Alignment:
| Q |
59 |
tatcggagcatggaagaagggtgatatacttttcagaaatgatgataatgaattagcttgccttgatttaactactggagcaattaagaaaattggtg |
156 |
Q |
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||||||| || ||||||||||||||||| |||| ||||| |||||| |||| | ||||| |||||||||||||| |||| ||| |||| ||||||| |
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| T |
27735531 |
tatcggaacagggaagaagggtgatatatttttgagaaaagatgatggtgaacttgcttgtcttgatttaactaccggagtaatggagaacattggtg |
27735434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 27595411 - 27595372
Alignment:
| Q |
1 |
catggactaagctcttcgatgttggacccttatctgacat |
40 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||| |
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| T |
27595411 |
catggattaagctcttcgatgttggacccttatctgacat |
27595372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 138
Target Start/End: Complemental strand, 27724289 - 27724210
Alignment:
| Q |
59 |
tatcggagcatggaagaagggtgatatacttttcagaaatgatgataatgaattagcttgccttgatttaactactggag |
138 |
Q |
| |
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|||||||||| ||||||||||||||||| |||| ||||| |||||| |||| | ||||| |||||||||| ||||||| |
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| T |
27724289 |
tatcggagcagggaagaagggtgatatatttttgagaaaagatgatggtgaacttgcttgtcttgatttaagcactggag |
27724210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 138
Target Start/End: Complemental strand, 27716930 - 27716889
Alignment:
| Q |
97 |
atgatgataatgaattagcttgccttgatttaactactggag |
138 |
Q |
| |
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|||||||||||||| ||||||| |||||||||||||| |||| |
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| T |
27716930 |
atgatgataatgaactagcttgtcttgatttaactaccggag |
27716889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 163
Target Start/End: Complemental strand, 14681943 - 14681843
Alignment:
| Q |
63 |
ggagcatggaagaagggtgatatacttttcagaaatgatgataatgaattagcttgccttgatttaactactggagcaattaagaaaattggtgttaaaa |
162 |
Q |
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|||||| ||||||||| ||||||| |||| ||||| ||||| |||| | ||||| ||||||||||||||| ||| |||| |||| ||||||||||||| |
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| T |
14681943 |
ggagcagggaagaaggttgatatagttttgagaaaatatgatggtgaacttgcttgtcttgatttaactacttgagtaattgagaacattggtgttaaaa |
14681844 |
T |
|
| Q |
163 |
c |
163 |
Q |
| |
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| T |
14681843 |
c |
14681843 |
T |
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