View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13221_low_17 (Length: 251)

Name: NF13221_low_17
Description: NF13221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13221_low_17
NF13221_low_17
[»] chr7 (14 HSPs)
chr7 (35-234)||(4712009-4712208)
chr7 (35-234)||(4845949-4846148)
chr7 (52-232)||(4666917-4667097)
chr7 (29-226)||(4653476-4653673)
chr7 (75-232)||(4636859-4637016)
chr7 (14-232)||(4783771-4783989)
chr7 (36-232)||(4816200-4816396)
chr7 (72-234)||(4662990-4663152)
chr7 (75-232)||(4697126-4697283)
chr7 (18-168)||(4647471-4647619)
chr7 (78-232)||(4863927-4864081)
chr7 (117-232)||(4630971-4631086)
chr7 (75-187)||(4643673-4643785)
chr7 (72-190)||(4672675-4672793)
[»] chr4 (1 HSPs)
chr4 (35-234)||(18925676-18925875)


Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 35 - 234
Target Start/End: Complemental strand, 4712208 - 4712009
Alignment:
Q  35 aatcacatcagcgtattgttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttgataagcagatcaaactcacaaaaatgt 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4712208 aatcacatcagcgtattgttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttgataagcagatcaaactcacaaaaatgt 4712109  T
Q  135 aaccttaccatataagtaaaactagaatcaactttgaaattccaagttacattataatcctctgtcacatccattccataacttcttgcagtaaagtata 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4712108 aaccttaccatataagtaaaactagaatcaactttgaaattccaagttacattataatcctctgtcacatccattccataacttcttgcagtaaagtata 4712009  T

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Target: chr7; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 35 - 234
Target Start/End: Complemental strand, 4846148 - 4845949
Alignment:
Q  35 aatcacatcagcgtattgttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttgataagcagatcaaactcacaaaaatgt 134  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4846148 aatcacatcagcatatagttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttggtaagcagatcaaactcacaaaaatgt 4846049  T
Q  135 aaccttaccatataagtaaaactagaatcaactttgaaattccaagttacattataatcctctgtcacatccattccataacttcttgcagtaaagtata 234  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||    
T  4846048 aaccttaccatataagtaaaactagaatcaacttcgaaattccaagttacattataatcctctgtcacatactttccataacttcttgcagttaagtata 4845949  T

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Target: chr7; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 52 - 232
Target Start/End: Original strand, 4666917 - 4667097
Alignment:
Q  52 gttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttgataagcagatcaaactcacaaaaatgtaaccttaccatataagt 151  Q
    ||||||||| ||||||||  ||||| |||||||||||||||||||||  |||||||||| ||  |||||||||||||||||| |||||||||||||||||    
T  4666917 gttcagccataatatcatctataaaaatctgaaaaactctatcacctggattcttgatatgccaatcaaactcacaaaaatgcaaccttaccatataagt 4667016  T
Q  152 aaaactagaatcaactttgaaattccaagttacattataatcctctgtcacatccattccataacttcttgcagtaaagta 232  Q
    |||| ||||||||||||| |||||||| || |||||||||| |||| |  ||||||||||||||||||||||||| |||||    
T  4667017 aaaaatagaatcaactttaaaattccatgtcacattataattctctttggcatccattccataacttcttgcagttaagta 4667097  T

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Target: chr7; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 29 - 226
Target Start/End: Original strand, 4653476 - 4653673
Alignment:
Q  29 ccatgtaatcacatcagcgtattgttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttgataagcagatcaaactcacaa 128  Q
    ||||| |||||||||||| | | |||||||||| | |||||  ||||||||||| ||||||||||||||||||| ||||||| ||  |||||| ||||||    
T  4653476 ccatgaaatcacatcagcatttggttcagccaagaaatcatgtataaatatctggaaaactctatcacctttatccttgatacgccaatcaaattcacaa 4653575  T
Q  129 aaatgtaaccttaccatataagtaaaactagaatcaactttgaaattccaagttacattataatcctctgtcacatccattccataacttcttgcagt 226  Q
    ||||||||||| ||||||||||||||  | || ||||||| |||||||||||||||||| ||||||||||| |||| ||||||||||||||| |||||    
T  4653576 aaatgtaacctgaccatataagtaaatgttgagtcaacttcgaaattccaagttacattgtaatcctctgtgacattcattccataacttctcgcagt 4653673  T

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Target: chr7; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 75 - 232
Target Start/End: Original strand, 4636859 - 4637016
Alignment:
Q  75 aatatctgaaaaactctatcacctttattcttgataagcagatcaaactcacaaaaatgtaaccttaccatataagtaaaactagaatcaactttgaaat 174  Q
    ||||||||||| ||||||||||||||||  |||||| ||  ||||||||||||||||||||||||||||||||||||||||  |||||||||||  || |    
T  4636859 aatatctgaaagactctatcacctttatagttgatatgccaatcaaactcacaaaaatgtaaccttaccatataagtaaaagcagaatcaacttcaaagt 4636958  T
Q  175 tccaagttacattataatcctctgtcacatccattccataacttcttgcagtaaagta 232  Q
    ||||||||||||||||||||| |||| ||| |||||| |||||||||||||| |||||    
T  4636959 tccaagttacattataatcctttgtctcatacattccgtaacttcttgcagttaagta 4637016  T

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Target: chr7; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 4783989 - 4783771
Alignment:
Q  14 caaaggagcaccagcccatgtaatcacatcagcgtattgttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttgataagc 113  Q
    |||||||||||||  |||  | |||||||||||    |||||||||||| ||||||  || || |||||||||| ||||||||| |  |  |||||| ||    
T  4783989 caaaggagcaccactccaccttatcacatcagcagcatgttcagccaaactatcatctatgaaaatctgaaaaattctatcaccatcctgtttgatatgc 4783890  T
Q  114 agatcaaactcacaaaaatgtaaccttaccatataagtaaaactagaatcaactttgaaattccaagttacattataatcctctgtcacatccattccat 213  Q
      ||||||||||||||||||||||||||||||||||||||||  |||||||||||  || |||||||||||||| |||||||||||| ||| ||||||||    
T  4783889 caatcaaactcacaaaaatgtaaccttaccatataagtaaaagcagaatcaacttcaaagttccaagttacattgtaatcctctgtctcatacattccat 4783790  T
Q  214 aacttcttgcagtaaagta 232  Q
    ||||||||||||| |||||    
T  4783789 aacttcttgcagttaagta 4783771  T

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Target: chr7; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 36 - 232
Target Start/End: Complemental strand, 4816396 - 4816200
Alignment:
Q  36 atcacatcagcgtattgttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttgataagcagatcaaactcacaaaaatgta 135  Q
    |||||||||||  |  ||||||||||| ||||||  || || |||||||||| ||||||||| |  |  |||||| ||  ||||||||||||||||||||    
T  4816396 atcacatcagcaaaaagttcagccaaactatcatctatgaaaatctgaaaaattctatcaccatcctgtttgatatgccaatcaaactcacaaaaatgta 4816297  T
Q  136 accttaccatataagtaaaactagaatcaactttgaaattccaagttacattataatcctctgtcacatccattccataacttcttgcagtaaagta 232  Q
    ||||||||||||||||||||  |||||||||||  || |||||||||||||| |||||||||||| ||| ||||||||||||||||||||| |||||    
T  4816296 accttaccatataagtaaaagcagaatcaacttcaaagttccaagttacattgtaatcctctgtctcatacattccataacttcttgcagttaagta 4816200  T

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Target: chr7; HSP #8
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 72 - 234
Target Start/End: Original strand, 4662990 - 4663152
Alignment:
Q  72 ataaatatctgaaaaactctatcacctttattcttgataagcagatcaaactcacaaaaatgtaaccttaccatataagtaaaactagaatcaactttga 171  Q
    ||||| |||||||| | |||||||||||||||  |||||  | ||||||||||||||||||||||||||||||| || ||||||  ||||||||| |  |    
T  4662990 ataaaaatctgaaacattctatcacctttatttatgatattcggatcaaactcacaaaaatgtaaccttaccatgtatgtaaaagaagaatcaacctcaa 4663089  T
Q  172 aattccaagttacattataatcctctgtcacatccattccataacttcttgcagtaaagtata 234  Q
    ||||||||||||||||||||||||||||||||| | |||||||| |||||||||| |||||||    
T  4663090 aattccaagttacattataatcctctgtcacatactttccataatttcttgcagttaagtata 4663152  T

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Target: chr7; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 75 - 232
Target Start/End: Complemental strand, 4697283 - 4697126
Alignment:
Q  75 aatatctgaaaaactctatcacctttattcttgataagcagatcaaactcacaaaaatgtaaccttaccatataagtaaaactagaatcaactttgaaat 174  Q
    ||||| ||||| |||||||||||| |||| |||||| || ||||||||||||||||||| |||||||||||||||||||||| |  |||||||| |||||    
T  4697283 aatatttgaaagactctatcacctatatttttgatatgctgatcaaactcacaaaaatgcaaccttaccatataagtaaaaccaacatcaacttcgaaat 4697184  T
Q  175 tccaagttacattataatcctctgtcacatccattccataacttcttgcagtaaagta 232  Q
    |||||||||||||  ||||||||||| |||||| ||||  |||||||||||| |||||    
T  4697183 tccaagttacattgaaatcctctgtctcatccaatccacgacttcttgcagttaagta 4697126  T

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Target: chr7; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 4647471 - 4647619
Alignment:
Q  18 ggagcaccagcccatgtaatcacatcagcgtattgttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttgataagcagat 117  Q
    |||||||||||||||| |||||||||||| || |||||||||||||||||||  ||||| || ||||||||| ||||||||  |||||| ||| |   ||    
T  4647471 ggagcaccagcccatgcaatcacatcagcataatgttcagccaaaatatcatctataaacatatgaaaaactgtatcacctgaattctttatatgtcaat 4647570  T
Q  118 caaactcacaaaaatgtaaccttaccatataagtaaaactagaatcaactt 168  Q
    |||||||||||||  |||||||||||||||||||||||| |||||||||||    
T  4647571 caaactcacaaaa--gtaaccttaccatataagtaaaaccagaatcaactt 4647619  T

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Target: chr7; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 78 - 232
Target Start/End: Original strand, 4863927 - 4864081
Alignment:
Q  78 atctgaaaaactctatcacctttattcttgataagcagatcaaactcacaaaaatgtaaccttaccatataagtaaaactagaatcaactttgaaattcc 177  Q
    ||||||||  ||||||||||||||||  | |||  | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||    
T  4863927 atctgaaaggctctatcacctttatttgttatattcggatcaaactcacaaaaatgtaaccttaccatataagtaaaattagaatcaacttcaaaattcc 4864026  T
Q  178 aagttacattataatcctctgtcacatccattccataacttcttgcagtaaagta 232  Q
    |||||||||| || ||||||||  ||| |  ||| |||||||||||||| |||||    
T  4864027 aagttacattgtactcctctgtggcatactgtccgtaacttcttgcagttaagta 4864081  T

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Target: chr7; HSP #12
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 117 - 232
Target Start/End: Original strand, 4630971 - 4631086
Alignment:
Q  117 tcaaactcacaaaaatgtaaccttaccatataagtaaaactagaatcaactttgaaattccaagttacattataatcctctgtcacatccattccataac 216  Q
    |||||||||||||||||||| ||||||||||||||||||  |||||||||||  ||||||||||||||||| ||||||| |||  |||||||||||||||    
T  4630971 tcaaactcacaaaaatgtaatcttaccatataagtaaaagaagaatcaacttcaaaattccaagttacattgtaatcctttgttgcatccattccataac 4631070  T
Q  217 ttcttgcagtaaagta 232  Q
    |||| ||||| |||||    
T  4631071 ttctcgcagttaagta 4631086  T

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Target: chr7; HSP #13
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 75 - 187
Target Start/End: Original strand, 4643673 - 4643785
Alignment:
Q  75 aatatctgaaaaactctatcacctttattcttgataagcagatcaaactcacaaaaatgtaaccttaccatataagtaaaactagaatcaactttgaaat 174  Q
    ||||||||||| |||||||||||||||||  | |||  | |||||||||||||||||||||||||||||||||||||||||| ||||||||| |  ||||    
T  4643673 aatatctgaaagactctatcacctttatttgttatatccggatcaaactcacaaaaatgtaaccttaccatataagtaaaaccagaatcaacctcaaaat 4643772  T
Q  175 tccaagttacatt 187  Q
    |||||||||||||    
T  4643773 tccaagttacatt 4643785  T

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Target: chr7; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 72 - 190
Target Start/End: Original strand, 4672675 - 4672793
Alignment:
Q  72 ataaatatctgaaaaactctatcacctttattcttgataagcagatcaaactcacaaaaatgtaaccttaccatataagtaaaactagaatcaactttga 171  Q
    ||||| ||||||||  ||||||||||| ||||  ||||||||   ||||||||||||||||||||||||||||||||||| |||  ||||||||| |  |    
T  4672675 ataaaaatctgaaaggctctatcacctgtattaatgataagcctgtcaaactcacaaaaatgtaaccttaccatataagtgaaagaagaatcaacctcaa 4672774  T
Q  172 aattccaagttacattata 190  Q
    |||||||||||||||||||    
T  4672775 aattccaagttacattata 4672793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 35 - 234
Target Start/End: Complemental strand, 18925875 - 18925676
Alignment:
Q  35 aatcacatcagcgtattgttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttgataagcagatcaaactcacaaaaatgt 134  Q
    |||||||||||| | | ||||||||||| ||||||  ||||| |||||||||||||||||||||| |||||| ||| ||  ||||||||| ||||||||     
T  18925875 aatcacatcagcatttcgttcagccaaattatcatctataaaaatctgaaaaactctatcaccttgattctttatatgccaatcaaactcgcaaaaatgc 18925776  T
Q  135 aaccttaccatataagtaaaactagaatcaactttgaaattccaagttacattataatcctctgtcacatccattccataacttcttgcagtaaagtata 234  Q
    || ||||||| |||||||||   |||||||||||  ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||    
T  18925775 aatcttaccaaataagtaaaggcagaatcaacttcaaaattccaagttacattataatcctttgtcgcatccattccataacttcttgcagttaagtata 18925676  T

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