View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13221_low_20 (Length: 202)
Name: NF13221_low_20
Description: NF13221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13221_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 88 - 183
Target Start/End: Original strand, 37893806 - 37893901
Alignment:
| Q |
88 |
ttcctcagaaaccaaacactgctcctcaagtttctgatcagaaaaaacaagtagtgcaacaagaaccaaagaaagaaattgaagaagtgtctcaaa |
183 |
Q |
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| T |
37893806 |
ttcctcagaaaccaaacactgctcctcaagtttctgatcagaaaaaacaagtagtgcaacaagaaccaaagaaagaaattgaagaagtgtctcaaa |
37893901 |
T |
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Target: chr5; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 88 - 183
Target Start/End: Original strand, 37188904 - 37188999
Alignment:
| Q |
88 |
ttcctcagaaaccaaacactgctcctcaagtttctgatcagaaaaaacaagtagtgcaacaagaaccaaagaaagaaattgaagaagtgtctcaaa |
183 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||| |
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| T |
37188904 |
ttcctcagaaaccaaacactgctcctcaagtttctgatcagaaaaaacaagtagtacatcaagaaccaaacaaagaaattgaagaagtgtctcaaa |
37188999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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