View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13221_low_7 (Length: 399)
Name: NF13221_low_7
Description: NF13221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13221_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 16 - 383
Target Start/End: Complemental strand, 49126806 - 49126439
Alignment:
| Q |
16 |
atgaatatgaatttgagatgataattgtttacctgcatgagaaccaggacatcaattggatcattgtcttcacagagtgtacgagggataaaaccatagt |
115 |
Q |
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| T |
49126806 |
atgaatatgaatttgagatgataattgtttacctgcatgagaaccaggacatcaattggatcattgtcttcacagagtgtacgagggataaaaccatagt |
49126707 |
T |
|
| Q |
116 |
tatgaggataaacaactgaagaatacaaaattcgatcaacctgagaaatgttcaaatgttaagaagagcaatctaaagacagacagacaaattgataagg |
215 |
Q |
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| T |
49126706 |
tatgaggataaacaactgaagaatacaaaattcgatcaacctgagaaatgttcaaatgttaagaagagcaatctaaagacagacagacaaattgataagg |
49126607 |
T |
|
| Q |
216 |
aaaaaagtcatctgtaattggagttgggtggaaaatctgtttcaaattacaacatttcaataagcaagcaggaaattggtttgtaccttaattaatccag |
315 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49126606 |
aaaaaagtcatctgtaattggagttgggtgggaaatctgtttcaaattacaacatttcaataagcaagcaggaaattggtttgtaccttaattaatccag |
49126507 |
T |
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| Q |
316 |
ttttcttgtcaagttcatatttgaccttgcttcctttagtgatctccacaacctgtaacaatatttag |
383 |
Q |
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| T |
49126506 |
ttttcttgtcaagttcatatttgaccttgcttcctttagtgatctccacaacctgtaacaatatttag |
49126439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 44 - 159
Target Start/End: Original strand, 8800148 - 8800263
Alignment:
| Q |
44 |
ttacctgcatgagaaccaggacatcaattggatcattgtcttcacagagtgtacgagggataaaaccatagttatgaggataaacaactgaagaatacaa |
143 |
Q |
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| T |
8800148 |
ttacctgcatgagaaccaagacatcgagtggatcattgtcttcacatagagttcgagggataaaaccatagttatgaggataaacaactgacgaatacag |
8800247 |
T |
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| Q |
144 |
aattcgatcaacctga |
159 |
Q |
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||| |||||||||||| |
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| T |
8800248 |
aatccgatcaacctga |
8800263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 8800344 - 8800415
Alignment:
| Q |
299 |
taccttaattaatccagttttcttgtcaagttcatatttgaccttgcttcctttagtgatctccacaacctg |
370 |
Q |
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| T |
8800344 |
taccttaatcattccagtctttttgtcaagttcatatttgaccttacttcccttagtgatctctacaacctg |
8800415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 157
Target Start/End: Original strand, 32814690 - 32814803
Alignment:
| Q |
44 |
ttacctgcatgagaaccaggacatcaattggatcattgtcttcacagagtgtacgagggataaaaccatagttatgaggataaacaactgaagaatacaa |
143 |
Q |
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| T |
32814690 |
ttacctgcatcagaactaggacatccaagggatcttcatcttcacaaagggttcttggaataaaaccatagttatgtggatagacaactgatgagtaaag |
32814789 |
T |
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| Q |
144 |
aattcgatcaacct |
157 |
Q |
| |
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||| |||||||||| |
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| T |
32814790 |
aatccgatcaacct |
32814803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 352
Target Start/End: Original strand, 32815325 - 32815378
Alignment:
| Q |
299 |
taccttaattaatccagttttcttgtcaagttcatatttgaccttgcttccttt |
352 |
Q |
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||||||||| | ||| |||||||||| ||||||||||| |||||||||||||| |
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| T |
32815325 |
taccttaataagtccgcttttcttgtccagttcatatttaaccttgcttccttt |
32815378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 300 - 352
Target Start/End: Complemental strand, 29368109 - 29368057
Alignment:
| Q |
300 |
accttaattaatccagttttcttgtcaagttcatatttgaccttgcttccttt |
352 |
Q |
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|||||||| | ||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
29368109 |
accttaataagtccagttttcttgtcaagttcatatttcaccttgtttccttt |
29368057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 300 - 352
Target Start/End: Complemental strand, 43547867 - 43547815
Alignment:
| Q |
300 |
accttaattaatccagttttcttgtcaagttcatatttgaccttgcttccttt |
352 |
Q |
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|||||||| | ||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
43547867 |
accttaataagtccagtttttttgtcaagttcatatttgaccttgtttccttt |
43547815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 157
Target Start/End: Complemental strand, 7986537 - 7986425
Alignment:
| Q |
45 |
tacctgcatgagaaccaggacatcaattggatcattgtcttcacagagtgtacgagggataaaaccatagttatgaggataaacaactgaagaatacaaa |
144 |
Q |
| |
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||||||||| |||||||| ||||| || |||||| |||||||||| | || || ||||||||||| ||||| || || || ||||| || || || | | |
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| T |
7986537 |
tacctgcatcagaaccagaacatccataggatcactgtcttcacaaatggttcgtgggataaaaccgtagttgtgtgggtagacaaccgatgagtaaaga |
7986438 |
T |
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| Q |
145 |
attcgatcaacct |
157 |
Q |
| |
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|| |||||||||| |
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| T |
7986437 |
atacgatcaacct |
7986425 |
T |
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