View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13221_low_8 (Length: 381)
Name: NF13221_low_8
Description: NF13221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13221_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 48 - 365
Target Start/End: Complemental strand, 32366349 - 32366035
Alignment:
| Q |
48 |
ggcagcgataattggatttgataattttttaggcaaaaaggagttataataaataaatnnnnnnncaagatagagagactaggggatataaaagctaatt |
147 |
Q |
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| T |
32366349 |
ggcagcgataattgaatttgataattttttaggcaaaaaggagttataataaataaataaaa---cgagatagagagactaggggatataaaagctgatt |
32366253 |
T |
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| Q |
148 |
gaggtacaatccaagtgggtataacacataaaaatacaaaccacatggatcaacctaatcaatcctaataaaacaaacatttatcacgagcgcagcctag |
247 |
Q |
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| T |
32366252 |
gaggtacaatccaagtggatataacacataaaaatacaaaccacatggaccaacctaatcaatcctaataaaacaaacatttatcacgagcgcaacctag |
32366153 |
T |
|
| Q |
248 |
cgaactcgcgtacgagcacgaaaccatattacnnnnnnngtgaagagtgagcgtccataagatcaaccaggttcacaattggcgaatggatcgatcacca |
347 |
Q |
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| T |
32366152 |
cgaactcgcgtacgagcacgaaaccatattacaaaaaaagtgaagagtgagcgtccataagatcaaccaggttcacaattggcgaatggatcgatcacca |
32366053 |
T |
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| Q |
348 |
atccacgtaccaacaacc |
365 |
Q |
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| T |
32366052 |
atccacgtaccaacaacc |
32366035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 271
Target Start/End: Complemental strand, 23043775 - 23043662
Alignment:
| Q |
158 |
ccaagtgggtataacacataaaaatacaaaccacatggatcaacc-taatcaatcctaataaaacaaacatttatcacgagcgcagcctagcgaactcgc |
256 |
Q |
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| T |
23043775 |
ccaaatgggaataaaacatgataatacaaaccag-tggatcaaccctaattaatcctaacaaagcaatcacttctcacgagcgcaacccagcgaacccgc |
23043677 |
T |
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| Q |
257 |
gtacgagcacgaaac |
271 |
Q |
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|||| ||||||||| |
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| T |
23043676 |
atacgggcacgaaac |
23043662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 164 - 341
Target Start/End: Complemental strand, 12328669 - 12328491
Alignment:
| Q |
164 |
gggtataacacataaaaatacaaaccacatggatcaacctaatcaatcctaataaaacaaacatttatcacgagcgcagcctagcgaactcgcgtacgag |
263 |
Q |
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|||||||| |||| ||||||||||||| ||||| |||| ||||||| |||||||||||||||||| | |||||||| ||||| |||| || ||| || |
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| T |
12328669 |
gggtataaaacatgaaaatacaaaccagatggaccaacttaatcaaacctaataaaacaaacattcctaacgagcgccacctagtgaacccgattactag |
12328570 |
T |
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| Q |
264 |
cacgaaaccatattac-nnnnnnngtgaagagtgagcgtccataagatcaaccaggttcacaattggcgaatggatcga |
341 |
Q |
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| T |
12328569 |
aacaaaactagataacaaaaaaaggtgaagagtgagcacccacatgatcaaccaggttcacaattggtgaatggatcga |
12328491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 30706035 - 30706107
Alignment:
| Q |
201 |
cctaatcaatcctaataaaacaaacatttatcacgagcgcagcctagcgaactcgcgtacgagcacgaaacca |
273 |
Q |
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|||||||||||||||| ||||||||| | | || |||||||| |||||||| |||||||| |||||| |||| |
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| T |
30706035 |
cctaatcaatcctaatcaaacaaacactcctgacaagcgcagcttagcgaacccgcgtacgggcacgatacca |
30706107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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