View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13222_high_11 (Length: 348)
Name: NF13222_high_11
Description: NF13222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13222_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 16 - 330
Target Start/End: Complemental strand, 34126934 - 34126620
Alignment:
| Q |
16 |
ataaaaacaataaataagttaaggaaccaatcatgcaatttaacttnnnnnnntgtctcaaaatggttgtcactacgtcgtcttaatagttttttacaac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34126934 |
ataaaaacaataaataagttaaggaaccaatcatgcaatttaacctaaaaaaatgtctcaaaatagttgtcactacgtcgtcttaatagttttttacaac |
34126835 |
T |
|
| Q |
116 |
gtcatctcaatagnnnnnnnnngtggtggtcggagtttgaacctaacaactgagttatgctcacgaggacatctcaataattgataaaa-gtaatttggt |
214 |
Q |
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||||||||||||| |||||||||| ||||||||||| |||||||| ||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
34126834 |
gtcatctcaatagtttttttttatggtggtcggggtttgaacctatcaactgagctatgctcacgatgacatctcaataattgataaaaagtaatttggt |
34126735 |
T |
|
| Q |
215 |
aaaatcttnnnnnnnnnnnnnnnnntttgaggggatcgtaaaatcctaatttatacacactatttgcaatctatagaaattgttcttaaacgtcgttaaa |
314 |
Q |
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|||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34126734 |
aaaatcttaaaaaaaaaaaaaaaaatt-gagggtatcgtaaaatcctaatttatacacactatttgcaatctatagaaattgttcttaaacgtcgttaaa |
34126636 |
T |
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| Q |
315 |
tctgcatgaaaccaat |
330 |
Q |
| |
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|||||||||||||||| |
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| T |
34126635 |
tctgcatgaaaccaat |
34126620 |
T |
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