View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13222_high_13 (Length: 295)
Name: NF13222_high_13
Description: NF13222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13222_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 27312991 - 27312704
Alignment:
| Q |
1 |
caaggctctggagttatcgacggctcaggaagtaaatggtgggcagcatcttgcaaaaagaacaagactaatgtaaaattttttcataatttttggcttt |
100 |
Q |
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| T |
27312991 |
caaggctctggagttatcgacggctcaggaagtaaatggtgggcagcatcttgcaaaaagaacaagactaatgt-aaattttttcataatttttggcttt |
27312893 |
T |
|
| Q |
101 |
gttatcttgcaaata--tttaaaaataacttatattgcaagcaataataatgttctg-nnnnnnnnnnaatcttttctcacagccttgcaaaggtgcacc |
197 |
Q |
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|||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
27312892 |
gttatcttacaaatatttttaaaaataacttatattgcaagcaataataatgttctgtgttttttttttatcttttctcacagccttgcaaaggtgcacc |
27312793 |
T |
|
| Q |
198 |
aacggtaagaacaactttcttaaaccaatgctgtattctatattttaagcac-nnnnnnntgtagttttaactctggagggtgattcat |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
27312792 |
aacggtaagaacaactttcttaaaccaatgctgtattctatattttaagcacaaaaaaaatgtagttttaactccggagggtgattcat |
27312704 |
T |
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