View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13222_high_18 (Length: 253)

Name: NF13222_high_18
Description: NF13222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13222_high_18
NF13222_high_18
[»] chr6 (3 HSPs)
chr6 (11-165)||(92308-92462)
chr6 (92-162)||(10895582-10895652)
chr6 (114-166)||(30797691-30797743)
[»] chr4 (5 HSPs)
chr4 (27-165)||(55403334-55403474)
chr4 (165-253)||(54745741-54745829)
chr4 (165-253)||(54762468-54762556)
chr4 (165-253)||(54769922-54770010)
chr4 (92-168)||(22460462-22460538)
[»] chr7 (3 HSPs)
chr7 (46-165)||(37125553-37125672)
chr7 (61-134)||(17264880-17264953)
chr7 (117-165)||(11033487-11033535)
[»] chr2 (4 HSPs)
chr2 (24-165)||(43326101-43326242)
chr2 (91-165)||(4009254-4009328)
chr2 (59-168)||(36620159-36620268)
chr2 (96-165)||(29522579-29522648)
[»] chr1 (4 HSPs)
chr1 (48-164)||(12307880-12307996)
chr1 (90-165)||(5733161-5733236)
chr1 (61-165)||(51285246-51285350)
chr1 (91-165)||(19659733-19659806)
[»] scaffold0026 (1 HSPs)
scaffold0026 (59-172)||(91551-91664)
[»] scaffold1342 (1 HSPs)
scaffold1342 (91-165)||(1227-1301)
[»] chr5 (2 HSPs)
chr5 (95-165)||(3805677-3805747)
chr5 (114-165)||(22775942-22775993)
[»] chr8 (2 HSPs)
chr8 (59-161)||(30253394-30253496)
chr8 (121-166)||(21468244-21468289)
[»] chr3 (1 HSPs)
chr3 (117-163)||(18478411-18478457)


Alignment Details
Target: chr6 (Bit Score: 139; Significance: 8e-73; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 92462 - 92308
Alignment:
Q  11 tgagaagaagaaaacgaatgagagagtgggagtgggagagagtgggtcaatggcatggttgtaaaattaaaattatattgagggtattatagtaatttca 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  | ||||||||||||||||||    
T  92462 tgagaagaagaaaacgaatgagagagtgggagtgggagagagtgggtcaatggcatggttgtaaaattaagattatatcaaaggtattatagtaatttca 92363  T
Q  111 cagaattaatgggtaggccatggccataccctgtccccatgtggctccgccactg 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  92362 cagaattaatgggtaggccatggccataccctgtccccatgtggctccgccactg 92308  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 162
Target Start/End: Original strand, 10895582 - 10895652
Alignment:
Q  92 gggtattatagtaatttcacagaattaatgggtaggccatggccata-ccctgtccccatgtggctccgcca 162  Q
    ||||||||||||  ||||||||||| |||||||||||||||| |||| ||| |||| |||||||||||||||    
T  10895582 gggtattatagtcttttcacagaataaatgggtaggccatgg-cataccccagtcctcatgtggctccgcca 10895652  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 30797743 - 30797691
Alignment:
Q  114 aattaatgggtaggccatggccataccctgtccccatgtggctccgccactgt 166  Q
    ||||||||||||| |||||||||  ||||||||||| || |||||||| ||||    
T  30797743 aattaatgggtagaccatggccagcccctgtccccaagtcgctccgcccctgt 30797691  T

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Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 27 - 165
Target Start/End: Complemental strand, 55403474 - 55403334
Alignment:
Q  27 aatgagagagtgggagt--gggagagagtgggtcaatggcatggttgtaaaattaaaattatattgagggtattatagtaatttcacagaattaatgggt 124  Q
    |||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  55403474 aatgagagagcgggagtctgggagagagtgggtcaatggcatggttgtaaaattaaaattatatcaagggtattatagtaatttcacagaattaatgggt 55403375  T
Q  125 aggccatggccataccctgtccccatgtggctccgccactg 165  Q
    |||||||| |||||| |||||||||||||||||||||||||    
T  55403374 aggccatgaccatactctgtccccatgtggctccgccactg 55403334  T

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Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 165 - 253
Target Start/End: Original strand, 54745741 - 54745829
Alignment:
Q  165 gtctctaaaggtgaatggtagtgaactcggttatactaaaggtatgcaagacaaagataaaatagcatggggatgtagtcgagatagca 253  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54745741 gtctctaaaggtgaatggtattgaactcggttatactaaaggtatgcaagacaaagataaaatagcatggggatgtagtcgagatagca 54745829  T

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Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 165 - 253
Target Start/End: Original strand, 54762468 - 54762556
Alignment:
Q  165 gtctctaaaggtgaatggtagtgaactcggttatactaaaggtatgcaagacaaagataaaatagcatggggatgtagtcgagatagca 253  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54762468 gtctctaaaggtgaatggtattgaactcggttatactaaaggtatgcaagacaaagataaaatagcatggggatgtagtcgagatagca 54762556  T

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Target: chr4; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 165 - 253
Target Start/End: Original strand, 54769922 - 54770010
Alignment:
Q  165 gtctctaaaggtgaatggtagtgaactcggttatactaaaggtatgcaagacaaagataaaatagcatggggatgtagtcgagatagca 253  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54769922 gtctctaaaggtgaatggtattgaactcggttatactaaaggtatgcaagacaaagataaaatagcatggggatgtagtcgagatagca 54770010  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 92 - 168
Target Start/End: Original strand, 22460462 - 22460538
Alignment:
Q  92 gggtattatagtaatttcacagaattaatgggtaggccatggccataccctgtccccatgtggctccgccactgtct 168  Q
    ||||||||||||  ||||||| ||| ||||||||||  |||||||  ||| |||| |||||||||||||||||||||    
T  22460462 gggtattatagtcttttcacaaaataaatgggtaggttatggccaatcccagtccacatgtggctccgccactgtct 22460538  T

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Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 46 - 165
Target Start/End: Complemental strand, 37125672 - 37125553
Alignment:
Q  46 gagagagtgggtcaatggcatggttgtaaaattaaaattatattgagggtattatagtaatttcacagaattaatgggtaggccatggccataccctgtc 145  Q
    ||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  37125672 gagagagtgagtcaatggcatggttgtaaaattaaaattatatcaagggtattatagtaatttcaaagaattaatgggtaggccatggccatactctgtc 37125573  T
Q  146 cccatgtggctccgccactg 165  Q
    ||||||||||||||||||||    
T  37125572 cccatgtggctccgccactg 37125553  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 134
Target Start/End: Original strand, 17264880 - 17264953
Alignment:
Q  61 tggcatggttgtaaaattaaaattatattgagggtattatagtaatttcacagaattaatgggtaggccatggc 134  Q
    ||||||| | |||| ||||||||||  |  |||||||||||||  ||||||| ||| |||||||||||||||||    
T  17264880 tggcatgatagtaatattaaaattacttcaagggtattatagtcttttcacaaaataaatgggtaggccatggc 17264953  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 11033535 - 11033487
Alignment:
Q  117 taatgggtaggccatggccataccctgtccccatgtggctccgccactg 165  Q
    |||||||  |||||||||||| |||||||| || |||||||||||||||    
T  11033535 taatgggatggccatggccattccctgtccacacgtggctccgccactg 11033487  T

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Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 24 - 165
Target Start/End: Complemental strand, 43326242 - 43326101
Alignment:
Q  24 acgaatgagagagtgggagtgggagagagtgggtcaatggcatggttgtaaaattaaaattatattgagggtattatagtaatttcacagaattaatggg 123  Q
    ||||||||||||||||||||  | || |||||||| ||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  43326242 acgaatgagagagtgggagtttgggatagtgggtcgatgacatggttgtaaaattaaaattatatcaagggtattatagtaatttcacagaattaatggg 43326143  T
Q  124 taggccatggccataccctgtccccatgtggctccgccactg 165  Q
    ||||||||| | ||||||||||| ||||||||||||||||||    
T  43326142 taggccatgactataccctgtcctcatgtggctccgccactg 43326101  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 91 - 165
Target Start/End: Complemental strand, 4009328 - 4009254
Alignment:
Q  91 agggtattatagtaatttcacagaattaatgggtaggccatggccataccctgtccccatgtggctccgccactg 165  Q
    ||||||| |||||||||||||| || ||||||| ||||||||||||| ||||||||||| |||||||||||||||    
T  4009328 agggtataatagtaatttcacaaaaataatgggcaggccatggccatcccctgtccccaagtggctccgccactg 4009254  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 168
Target Start/End: Original strand, 36620159 - 36620268
Alignment:
Q  59 aatggcatggttgtaaaattaaaattatattgagggtattatagtaatttcacagaattaatgggtaggccatggccataccctgtccccatgtggctcc 158  Q
    |||||||| | ||||| ||| ||||||  || |||||||||| ||||||||||| |||||||||| ||| ||| ||||||||| |||| || ||||||||    
T  36620159 aatggcatagctgtaatattcaaattagcttaagggtattatggtaatttcacaaaattaatgggcaggacatcgccatacccagtcctcacgtggctcc 36620258  T
Q  159 gccactgtct 168  Q
    ||||||||||    
T  36620259 gccactgtct 36620268  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 29522579 - 29522648
Alignment:
Q  96 attatagtaatttcacagaattaatgggtaggccatggccataccctgtccccatgtggctccgccactg 165  Q
    ||||||||| ||||||| ||| |||||||||||||||||||||||| |||| || |||||||||||||||    
T  29522579 attatagtattttcacaaaataaatgggtaggccatggccatacccagtccacacgtggctccgccactg 29522648  T

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Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 48 - 164
Target Start/End: Original strand, 12307880 - 12307996
Alignment:
Q  48 gagagtgggtcaatggcatggttgtaaaattaaaattatattgagggtattatagtaatttcacagaattaatgggtaggccatggccataccctgtccc 147  Q
    |||||||||||||||| |||||||||||||||||||||||   | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12307880 gagagtgggtcaatggtatggttgtaaaattaaaattataccaaaggtattatagtaatttcacagaactaatgggtaggccatggccataccctgtccc 12307979  T
Q  148 catgtggctccgccact 164  Q
    |||| ||||||||||||    
T  12307980 catgcggctccgccact 12307996  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 90 - 165
Target Start/End: Complemental strand, 5733236 - 5733161
Alignment:
Q  90 gagggtattatagtaatttcacagaattaatgggtaggccatggccataccctgtccccatgtggctccgccactg 165  Q
    |||||||| || |||||||| || || |||||||||||| |||||||| ||| ||||||| |||||||||||||||    
T  5733236 gagggtataattgtaatttctcataaataatgggtaggctatggccatccccagtccccaagtggctccgccactg 5733161  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 165
Target Start/End: Complemental strand, 51285350 - 51285246
Alignment:
Q  61 tggcatggttgtaaaattaaaattatattgagggtattatagtaatttcacagaattaatgggtaggccatggccataccctgtccccatgtggctccgc 160  Q
    ||||||||||||| | || | ||||  || |||||||| | |||||||| || || |||||||  |||||||||| | ||||||||||| ||||||||||    
T  51285350 tggcatggttgtagattttatattaacttaagggtattttggtaatttctcaaaaataatggggtggccatggccttcccctgtccccacgtggctccgc 51285251  T
Q  161 cactg 165  Q
    |||||    
T  51285250 cactg 51285246  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 165
Target Start/End: Original strand, 19659733 - 19659806
Alignment:
Q  91 agggtattatagtaatttcacagaattaatgggtaggccatggccataccctgtccccatgtggctccgccactg 165  Q
    ||||||| ||||||||||| || || ||||||| ||||||||||||| ||  |||| ||||||||||||||||||    
T  19659733 agggtataatagtaatttcccaaaaataatggggaggccatggccat-cctggtcctcatgtggctccgccactg 19659806  T

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Target: scaffold0026 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 59 - 172
Target Start/End: Complemental strand, 91664 - 91551
Alignment:
Q  59 aatggcatggttgtaaaattaaaattatattgagggtattatagtaatttcacagaattaatgggtaggccatggccataccctgtccccatgtggctcc 158  Q
    ||||| |||||||||| |||||||||||    ||||||||||  ||||||||||||| || ||||||||||||||||||||||||||| || ||||||||    
T  91664 aatggaatggttgtaatattaaaattatgacaagggtattatgataatttcacagaaatactgggtaggccatggccataccctgtcctcacgtggctcc 91565  T
Q  159 gccactgtctctaa 172  Q
     ||||||| |||||    
T  91564 accactgtttctaa 91551  T

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Target: scaffold1342 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold1342
Description:

Target: scaffold1342; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 91 - 165
Target Start/End: Complemental strand, 1301 - 1227
Alignment:
Q  91 agggtattatagtaatttcacagaattaatgggtaggccatggccataccctgtccccatgtggctccgccactg 165  Q
    ||||||| |||||||||||||| || ||||||| ||||||||||||| ||||||||||| |||||||||||||||    
T  1301 agggtataatagtaatttcacaaaaataatgggcaggccatggccatcccctgtccccaagtggctccgccactg 1227  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 165
Target Start/End: Original strand, 3805677 - 3805747
Alignment:
Q  95 tattatagtaatttcacagaattaatgggtaggccatggccataccctgtccccatgtggctccgccactg 165  Q
    |||||| ||| |||| ||||||||||||||||||||||||||||||| |||| || ||||||| |||||||    
T  3805677 tattatggtattttcccagaattaatgggtaggccatggccatacccagtcctcacgtggctctgccactg 3805747  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 165
Target Start/End: Complemental strand, 22775993 - 22775942
Alignment:
Q  114 aattaatgggtaggccatggccataccctgtccccatgtggctccgccactg 165  Q
    ||||||||||||||| |||||||  ||||||||||| |||||||||||||||    
T  22775993 aattaatgggtaggctatggccagcccctgtccccaagtggctccgccactg 22775942  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 161
Target Start/End: Original strand, 30253394 - 30253496
Alignment:
Q  59 aatggcatggttgtaaaattaaaattatattgagggtattatagtaatttcacagaattaatgggtaggccatggccataccctgtccccatgtggctcc 158  Q
    ||||||||| ||||||  || |||| | || |||||||| ||||||||||| || || |||||| |||||||| ||||| |||    |||||||||||||    
T  30253394 aatggcatgtttgtaattttcaaataacatagagggtataatagtaatttcccaaaaataatggataggccattgccatccccaaatcccatgtggctcc 30253493  T
Q  159 gcc 161  Q
    |||    
T  30253494 gcc 30253496  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 21468289 - 21468244
Alignment:
Q  121 gggtaggccatggccataccctgtccccatgtggctccgccactgt 166  Q
    |||||||||||||||||||| ||||| || ||| ||||||||||||    
T  21468289 gggtaggccatggccataccatgtcctcacgtgtctccgccactgt 21468244  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 18478411 - 18478457
Alignment:
Q  117 taatgggtaggccatggccataccctgtccccatgtggctccgccac 163  Q
    ||||||||||||| ||||||| ||| |||||||||||||||| ||||    
T  18478411 taatgggtaggccttggccatccccagtccccatgtggctccaccac 18478457  T

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