View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13222_high_21 (Length: 249)

Name: NF13222_high_21
Description: NF13222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13222_high_21
NF13222_high_21
[»] chr7 (20 HSPs)
chr7 (18-235)||(17856273-17856483)
chr7 (72-213)||(41340092-41340233)
chr7 (86-226)||(18671716-18671856)
chr7 (59-226)||(18767954-18768122)
chr7 (86-212)||(5327323-5327449)
chr7 (63-235)||(45993113-45993285)
chr7 (59-235)||(36227576-36227753)
chr7 (92-226)||(34457618-34457752)
chr7 (87-226)||(13440599-13440738)
chr7 (62-232)||(13553613-13553784)
chr7 (99-217)||(19735073-19735191)
chr7 (66-139)||(23887716-23887790)
chr7 (66-139)||(23898892-23898966)
chr7 (86-133)||(9601389-9601436)
chr7 (86-133)||(9828960-9829007)
chr7 (63-166)||(19544832-19544936)
chr7 (62-166)||(20918566-20918670)
chr7 (62-139)||(33820988-33821066)
chr7 (92-226)||(46626368-46626502)
chr7 (117-209)||(34232255-34232347)
[»] scaffold0308 (1 HSPs)
scaffold0308 (59-235)||(17682-17859)
[»] chr6 (17 HSPs)
chr6 (70-235)||(33805317-33805483)
chr6 (67-233)||(4478527-4478694)
chr6 (80-234)||(23065494-23065648)
chr6 (62-233)||(13086078-13086250)
chr6 (62-235)||(11469106-11469279)
chr6 (63-235)||(33640455-33640627)
chr6 (90-235)||(19256177-19256322)
chr6 (59-218)||(21549402-21549562)
chr6 (61-235)||(502960-503135)
chr6 (87-226)||(23346922-23347061)
chr6 (87-225)||(15674376-15674514)
chr6 (173-235)||(17078731-17078793)
chr6 (91-235)||(11060321-11060465)
chr6 (162-235)||(18050979-18051052)
chr6 (173-212)||(17873367-17873406)
chr6 (60-209)||(26205904-26206054)
chr6 (199-235)||(10362670-10362706)
[»] chr5 (16 HSPs)
chr5 (59-235)||(35122132-35122309)
chr5 (59-235)||(30509473-30509650)
chr5 (59-235)||(30549813-30549990)
chr5 (59-226)||(38358013-38358181)
chr5 (80-234)||(6866902-6867056)
chr5 (61-234)||(22094678-22094852)
chr5 (117-235)||(19512950-19513068)
chr5 (60-226)||(10486346-10486514)
chr5 (122-209)||(31864352-31864439)
chr5 (117-209)||(31864797-31864889)
chr5 (60-225)||(34481495-34481661)
chr5 (189-231)||(20208276-20208318)
chr5 (173-234)||(6049759-6049820)
chr5 (63-166)||(380507-380611)
chr5 (80-152)||(22174442-22174514)
chr5 (97-141)||(30723522-30723566)
[»] chr2 (19 HSPs)
chr2 (80-234)||(35488375-35488529)
chr2 (60-226)||(28399977-28400144)
chr2 (59-186)||(8065687-8065815)
chr2 (61-235)||(15018214-15018389)
chr2 (56-209)||(36804682-36804836)
chr2 (62-233)||(9668435-9668607)
chr2 (62-192)||(11233919-11234050)
chr2 (87-226)||(26894067-26894206)
chr2 (87-226)||(26899506-26899645)
chr2 (124-206)||(16213744-16213826)
chr2 (61-234)||(22724867-22725041)
chr2 (62-165)||(44028649-44028753)
chr2 (173-235)||(1380619-1380681)
chr2 (60-141)||(13550748-13550830)
chr2 (60-141)||(13551201-13551283)
chr2 (90-235)||(11028407-11028552)
chr2 (61-136)||(33583855-33583931)
chr2 (65-166)||(12646127-12646229)
chr2 (60-152)||(6824031-6824124)
[»] chr3 (22 HSPs)
chr3 (59-226)||(36709456-36709624)
chr3 (60-226)||(45684722-45684889)
chr3 (59-218)||(15481184-15481344)
chr3 (59-218)||(42674865-42675025)
chr3 (62-235)||(21739952-21740126)
chr3 (56-213)||(24926111-24926269)
chr3 (63-235)||(14863895-14864068)
chr3 (148-218)||(18366098-18366168)
chr3 (87-226)||(6175933-6176072)
chr3 (87-225)||(29309955-29310093)
chr3 (102-234)||(54439577-54439715)
chr3 (62-166)||(55367216-55367320)
chr3 (117-166)||(43284836-43284885)
chr3 (170-235)||(50544761-50544825)
chr3 (63-209)||(43121104-43121251)
chr3 (117-235)||(48192336-48192453)
chr3 (63-163)||(16179556-16179657)
chr3 (86-167)||(30188395-30188476)
chr3 (62-141)||(10868234-10868314)
chr3 (117-167)||(19566006-19566056)
chr3 (62-166)||(25024273-25024378)
chr3 (117-166)||(43285383-43285432)
[»] chr8 (13 HSPs)
chr8 (59-223)||(23942636-23942801)
chr8 (116-218)||(44082496-44082598)
chr8 (59-235)||(6901446-6901622)
chr8 (122-233)||(12134866-12134977)
chr8 (63-235)||(4987495-4987668)
chr8 (62-235)||(11393777-11393951)
chr8 (91-235)||(17659368-17659512)
chr8 (63-235)||(36157691-36157863)
chr8 (62-192)||(43249234-43249364)
chr8 (63-235)||(24794294-24794456)
chr8 (90-164)||(12341175-12341249)
chr8 (86-142)||(29721364-29721420)
chr8 (80-141)||(33178474-33178535)
[»] chr4 (21 HSPs)
chr4 (86-235)||(53810378-53810527)
chr4 (59-218)||(26694482-26694642)
chr4 (61-235)||(19114973-19115148)
chr4 (61-235)||(8935611-8935786)
chr4 (87-226)||(55299158-55299297)
chr4 (87-226)||(23872931-23873070)
chr4 (90-235)||(23657834-23657979)
chr4 (144-235)||(4524139-4524229)
chr4 (87-218)||(20675576-20675707)
chr4 (63-228)||(34975079-34975245)
chr4 (90-150)||(19648324-19648384)
chr4 (65-235)||(10562765-10562936)
chr4 (125-235)||(42778775-42778885)
chr4 (63-235)||(42952935-42953097)
chr4 (60-141)||(2632029-2632111)
chr4 (125-235)||(20396119-20396229)
chr4 (65-166)||(55725138-55725240)
chr4 (96-209)||(3129453-3129566)
chr4 (125-209)||(53486436-53486520)
chr4 (170-235)||(13158324-13158388)
chr4 (198-235)||(49925833-49925870)
[»] chr1 (14 HSPs)
chr1 (63-235)||(25504424-25504597)
chr1 (62-233)||(39430816-39430988)
chr1 (87-226)||(48072886-48073025)
chr1 (60-226)||(32352737-32352904)
chr1 (81-206)||(34853097-34853222)
chr1 (62-233)||(49264393-49264565)
chr1 (62-192)||(20796237-20796368)
chr1 (158-235)||(28097492-28097568)
chr1 (173-231)||(26721174-26721232)
chr1 (173-235)||(30110466-30110527)
chr1 (63-156)||(20987771-20987865)
chr1 (61-166)||(40562986-40563092)
chr1 (117-166)||(33142698-33142747)
chr1 (173-213)||(10710738-10710778)
[»] scaffold0002 (2 HSPs)
scaffold0002 (62-226)||(327564-327729)
scaffold0002 (90-226)||(312139-312275)
[»] scaffold0029 (1 HSPs)
scaffold0029 (90-226)||(134312-134448)
[»] scaffold0048 (1 HSPs)
scaffold0048 (71-147)||(63737-63814)
[»] scaffold0912 (1 HSPs)
scaffold0912 (173-235)||(2414-2476)
[»] scaffold0131 (1 HSPs)
scaffold0131 (60-209)||(3983-4133)
[»] scaffold0112 (1 HSPs)
scaffold0112 (146-235)||(15165-15253)
[»] scaffold1350 (1 HSPs)
scaffold1350 (65-163)||(153-252)
[»] scaffold0179 (2 HSPs)
scaffold0179 (173-231)||(8073-8131)
scaffold0179 (173-231)||(13007-13065)
[»] scaffold0007 (1 HSPs)
scaffold0007 (125-235)||(182652-182762)


Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 17856483 - 17856273
Alignment:
Q  18 atttaactcaaaagataaaaattatgataccaagaatattgtaaaaaggagtttggagggttggggtcaggaagttgaaggagtttaatgtagcattgct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17856483 atttaactcaaaagataaaaattatgataccaagaatattgtaaaaaggagtttggagggttggggtcaggaagttgaaggagtttaatgtagcattgct 17856384  T
Q  118 agggaaatggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggg 217  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||       ||||||||    
T  17856383 agggaaatggtgttggaggatgttagtggatagagaaggattgtggtatcatgttttagtcgcccgttatggcgaaataggtggg-------aggtgggg 17856291  T
Q  218 gtccggagttgttcttct 235  Q
    ||||||||||||||||||    
T  17856290 gtccggagttgttcttct 17856273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 72 - 213
Target Start/End: Complemental strand, 41340233 - 41340092
Alignment:
Q  72 ggagggttggggtcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgtggtatcatgt 171  Q
    ||||||||||||||||||||||||||||||||||| | || || ||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||    
T  41340233 ggagggttggggtcaggaagttgaaggagtttaattttgctttactagggaaatggtgttggaggatgttagtggatagagaaggtttgtggtaccatgt 41340134  T
Q  172 tttagtcgtccgttatcgcgaaataggtgggaggttggaggt 213  Q
    |||||||| ||| ||| ||||  |||||||||||||||||||    
T  41340133 tttagtcgcccgatatggcgaggtaggtgggaggttggaggt 41340092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 86 - 226
Target Start/End: Complemental strand, 18671856 - 18671716
Alignment:
Q  86 aggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcgtccgtt 185  Q
    |||||||||||||| |||||||| || || ||||| ||||||||||||||||||||| | ||||||| ||| ||||||||||||||||||||||  ||||    
T  18671856 aggaagttgaaggaatttaatgttgctttactaggtaaatggtgttggaggatgttagttgatagagcagggttgtggtatcatgttttagtcgctcgtt 18671757  T
Q  186 atcgcgaaataggtgggaggttggaggtgggggtccggagt 226  Q
    || ||||| |||||||||||||||||||||||| |||||||    
T  18671756 atggcgaagtaggtgggaggttggaggtggggggccggagt 18671716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 59 - 226
Target Start/End: Complemental strand, 18768122 - 18767954
Alignment:
Q  59 taaaaaggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaagga 157  Q
    |||||||||||||||||| |||||| | ||||  ||||||||||||||| | || || ||||| ||||||||||||||||||||| | |||||||||||     
T  18768122 taaaaaggagtttggaggtttgggggttaggagattgaaggagtttaatattgctttactaggtaaatggtgttggaggatgttagttgatagagaaggg 18768023  T
Q  158 ttgtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagt 226  Q
    ||||||||||| |||||||||  ||||||| || || |||||||||||||||||||||||| |||||||    
T  18768022 ttgtggtatcaggttttagtctcccgttatggcaaagtaggtgggaggttggaggtggggggccggagt 18767954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 86 - 212
Target Start/End: Complemental strand, 5327449 - 5327323
Alignment:
Q  86 aggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcgtccgtt 185  Q
    ||||||||||||||||||||| | || || ||||||||||||||||||||||||||| ||||||||||||| || ||||| ||||||||||||| ||| |    
T  5327449 aggaagttgaaggagtttaatcttgctttactagggaaatggtgttggaggatgttagtggatagagaaggtttatggtaccatgttttagtcgcccgat 5327350  T
Q  186 atcgcgaaataggtgggaggttggagg 212  Q
    || ||||  ||||||||||||||||||    
T  5327349 atggcgaggtaggtgggaggttggagg 5327323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 63 - 235
Target Start/End: Complemental strand, 45993285 - 45993113
Alignment:
Q  63 aaggagtttggagggtt-ggggtcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgt 161  Q
    ||||||||||||||||| ||||| ||  ||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||| |  || || |    
T  45993285 aaggagtttggagggttaggggttagacagttgaaggagtttaatgttgcattactagggaaatggtgttggaggatgttagtggataggggtggttttt 45993186  T
Q  162 ggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttcttct 235  Q
    |||||   |||||||||| ||||||| ||||  |  |||||||||||||||| |||| ||||||||||||||||    
T  45993185 ggtatagagttttagtcgcccgttatggcgaggtgtgtgggaggttggaggttgggg-ccggagttgttcttct 45993113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 59 - 235
Target Start/End: Original strand, 36227576 - 36227753
Alignment:
Q  59 taaaaaggagtttggagggttggggtc-aggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaagga 157  Q
    ||||||||||  ||||||||||||||  ||||| ||||||||||||||||| || || ||||| || |||| ||||||||||||| | |||||||||||     
T  36227576 taaaaaggagcatggagggttggggtttaggaaattgaaggagtttaatgttgctttactaggtaagtggtattggaggatgttagttgatagagaaggt 36227675  T
Q  158 ttgtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttcttct 235  Q
    || |||||  ||||| ||||||  || ||| ||||| |||||||||||||||||||||||| |||||||  |||||||    
T  36227676 ttatggtacaatgttctagtcgcgcggtatggcgaagtaggtgggaggttggaggtggggggccggagtgattcttct 36227753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 92 - 226
Target Start/End: Original strand, 34457618 - 34457752
Alignment:
Q  92 ttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcgtccgttatcgcg 191  Q
    ||||||||||||||| | || || ||||| ||||||||||||  ||||||| | ||||||||||| ||||||||||| |||||||||  ||||||| ||     
T  34457618 ttgaaggagtttaatattgctttactaggtaaatggtgttgggtgatgttagttgatagagaagggttgtggtatcaggttttagtcacccgttatggca 34457717  T
Q  192 aaataggtgggaggttggaggtgggggtccggagt 226  Q
    || |||||||||||||||||||||||| |||||||    
T  34457718 aagtaggtgggaggttggaggtggggggccggagt 34457752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 87 - 226
Target Start/End: Complemental strand, 13440738 - 13440599
Alignment:
Q  87 ggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcgtccgtta 186  Q
    |||| ||||||||||||||| |||| ||| |||| |||||||||||| |||||||  |||||||||  || ||||||||||  |||||||||| | | ||    
T  13440738 ggaaattgaaggagtttaatttagctttgttaggaaaatggtgttggcggatgttggtggatagaggtggtttgtggtatcgggttttagtcgccaggta 13440639  T
Q  187 tcgcgaaataggtgggaggttggaggtgggggtccggagt 226  Q
    | ||||| ||||||| ||||||||||| |||| |||||||    
T  13440638 tggcgaattaggtggcaggttggaggttgggggccggagt 13440599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 62 - 232
Target Start/End: Original strand, 13553613 - 13553784
Alignment:
Q  62 aaaggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattg 160  Q
    |||||||| ||| ||||||||| | |||| ||||| |||||||||| | || ||| |||  ||||||||||||||||||||  | ||||||| ||| |||    
T  13553613 aaaggagtctggggggttgggggttaggaggttgagggagtttaattttgctttgttagataaatggtgttggaggatgttggtagatagagtagggttg 13553712  T
Q  161 tggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttct 232  Q
    ||||||  |||| |||||| ||||||| ||||  | || |||||||||||||| |||| |||||||||||||    
T  13553713 tggtatagtgttctagtcgcccgttatggcgaggttggagggaggttggaggttgggggccggagttgttct 13553784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 217
Target Start/End: Complemental strand, 19735191 - 19735073
Alignment:
Q  99 agtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcgtccgttatcgcgaaatagg 198  Q
    |||||||| | |||||| |||| ||||||||||||||||||||  | ||||||| ||| |||||||||  |||| | |||  ||||||| ||||  | ||    
T  19735191 agtttaattttgcattgttaggtaaatggtgttggaggatgttggtcgatagagtaggtttgtggtatagtgttcttgtcacccgttatagcgaggttgg 19735092  T
Q  199 tgggaggttggaggtgggg 217  Q
    |||||||||||||||||||    
T  19735091 tgggaggttggaggtgggg 19735073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 23887790 - 23887716
Alignment:
Q  66 gagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatg 139  Q
    |||||||||||||||||| ||||  |||||| |||||||||| |||| ||| |||| ||||||||||||||||||    
T  23887790 gagtttggagggttgggggtcagacagttgagggagtttaatatagctttgttaggaaaatggtgttggaggatg 23887716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 23898966 - 23898892
Alignment:
Q  66 gagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatg 139  Q
    |||||||||||||||||| ||||  |||||| |||||||||| |||| ||| |||| ||||||||||||||||||    
T  23898966 gagtttggagggttgggggtcagacagttgagggagtttaatatagctttgttaggaaaatggtgttggaggatg 23898892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 133
Target Start/End: Complemental strand, 9601436 - 9601389
Alignment:
Q  86 aggaagttgaaggagtttaatgtagcattgctagggaaatggtgttgg 133  Q
    |||| ||| ||||||||||||||||||||||||||||| |||||||||    
T  9601436 aggaggtttaaggagtttaatgtagcattgctagggaagtggtgttgg 9601389  T

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Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 133
Target Start/End: Complemental strand, 9829007 - 9828960
Alignment:
Q  86 aggaagttgaaggagtttaatgtagcattgctagggaaatggtgttgg 133  Q
    |||| ||| ||||||||||||||||||||||||||||| |||||||||    
T  9829007 aggaggtttaaggagtttaatgtagcattgctagggaagtggtgttgg 9828960  T

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Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 166
Target Start/End: Original strand, 19544832 - 19544936
Alignment:
Q  63 aaggagtttggagggtt-ggggtcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgt 161  Q
    ||||||| ||||||||| ||||||||| |||||| ||||||||||   || ||  |||| |||||||||||| |||||||  |||||||||| || || |    
T  19544832 aaggagtatggagggttaggggtcaggcagttgagggagtttaatagtgccttattaggcaaatggtgttggcggatgttggtggatagagatgggtttt 19544931  T
Q  162 ggtat 166  Q
    |||||    
T  19544932 ggtat 19544936  T

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Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 166
Target Start/End: Complemental strand, 20918670 - 20918566
Alignment:
Q  62 aaaggagtttggagggttggggtcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgt 161  Q
    |||||||| | |||||||||||| |||||  || ||||||||||    || |||||||| |||||||||| |||| ||||| | ||||||| ||| ||||    
T  20918670 aaaggagtctagagggttggggttaggaaaatgcaggagtttaacactgctttgctaggaaaatggtgttcgaggttgttagtagatagaggaggtttgt 20918571  T
Q  162 ggtat 166  Q
    |||||    
T  20918570 ggtat 20918566  T

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Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 139
Target Start/End: Original strand, 33820988 - 33821066
Alignment:
Q  62 aaaggagtttggagggtt-ggggtcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatg 139  Q
    |||||||||||||||||| ||||||||  | |||| |||||||||| |||| ||  |||  ||||||||||||||||||    
T  33820988 aaaggagtttggagggttgggggtcagacacttgatggagtttaatatagctttattagaaaaatggtgttggaggatg 33821066  T

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Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 226
Target Start/End: Complemental strand, 46626502 - 46626368
Alignment:
Q  92 ttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcgtccgttatcgcg 191  Q
    |||||||| ||||||   || ||| |||| |||||||||||| |||||||  |||| ||||  || |||||||||  ||| ||||| | | | ||| |||    
T  46626502 ttgaaggaatttaatagtgctttgttaggtaaatggtgttggcggatgttgttggacagaggtggtttgtggtatagtgtcttagttgccaggtatggcg 46626403  T
Q  192 aaataggtgggaggttggaggtgggggtccggagt 226  Q
    || ||||||| ||||||||||| |||| |||||||    
T  46626402 aattaggtggcaggttggaggttgggggccggagt 46626368  T

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Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 209
Target Start/End: Complemental strand, 34232347 - 34232255
Alignment:
Q  117 tagggaaatggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttgg 209  Q
    ||||||| ||||||||||||||| || | |||||    || || |||||||  |||||||||| ||||||| ||| | |||||||||||||||    
T  34232347 tagggaagtggtgttggaggatgctagttgataggagtggtttttggtatcgagttttagtcgaccgttatggcggagtaggtgggaggttgg 34232255  T

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Target: scaffold0308 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 59 - 235
Target Start/End: Complemental strand, 17859 - 17682
Alignment:
Q  59 taaaaaggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaagga 157  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||    
T  17859 taaaaaggagtttggagggttgggggtcaggaagttgaaggagtttaatgttgcattgctagggaaatggtgttggtggatgttagtggatagagaagga 17760  T
Q  158 ttgtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttcttct 235  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||  | ||||||||||||||    
T  17759 ttgtggtatcatgttttagtcgcccgttatggcgaaataggtgggaggttggaggtggggagctggagttgttcttct 17682  T

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Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 33805483 - 33805317
Alignment:
Q  70 ttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgtggtatca 168  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33805483 ttggagggttgggggtcaggaagttgaaggagtttaatgttgcattgctagggaaatggtgttggaggatgttagtggatagagaaggattgtggtatca 33805384  T
Q  169 tgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttcttct 235  Q
    ||||||||||| ||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  33805383 tgttttagtcgcccgctatggcgaaataggtgggaggttggaggtggggggccggagttgttcttct 33805317  T

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Target: chr6; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 67 - 233
Target Start/End: Complemental strand, 4478694 - 4478527
Alignment:
Q  67 agtttggagggttggggtcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgtggtat 166  Q
    ||||||||||||| |||| | |||||| |||||||||||||||||  ||||||  ||||||||||||||||||||| ||||||| ||||| |||||||||    
T  4478694 agtttggagggttagggttaagaagttaaaggagtttaatgtagc--tgctagaaaaatggtgttggaggatgttagtggatagggaagggttgtggtat 4478597  T
Q  167 catgttttagtcgtccgttatcgcgaaataggtgggaggttggagg---tgggggtccggagttgttctt 233  Q
    ||||||||||||| ||||||| ||||| ||||||||||||||||||   | |||| ||||||||||||||    
T  4478596 catgttttagtcgcccgttatggcgaagtaggtgggaggttggaggtaattgggggccggagttgttctt 4478527  T

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Target: chr6; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 80 - 234
Target Start/End: Original strand, 23065494 - 23065648
Alignment:
Q  80 ggggtcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcg 179  Q
    ||||| || |||||||||||||||||||| |  || ||||| |||||||||| |||| ||||| | ||||||||||| ||||||||||||||||||||||    
T  23065494 ggggttagaaagttgaaggagtttaatgttgatttactaggtaaatggtgttagaggttgttagttgatagagaaggtttgtggtatcatgttttagtcg 23065593  T
Q  180 tccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttcttc 234  Q
     ||||||| ||||| |||||||||||||||||||||||| ||||||| |||||||    
T  23065594 cccgttatggcgaagtaggtgggaggttggaggtggggggccggagtggttcttc 23065648  T

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Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 62 - 233
Target Start/End: Complemental strand, 13086250 - 13086078
Alignment:
Q  62 aaaggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattg 160  Q
    |||||||  ||||||||||||| | ||||||||||||||||||||||| || ||| |||| ||||||||||||||||||||  | ||||||| ||| |||    
T  13086250 aaaggaggctggagggttgggggttaggaagttgaaggagtttaatgttgctttgttaggtaaatggtgttggaggatgttggtagatagagtaggtttg 13086151  T
Q  161 tggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttctt 233  Q
    ||||||  |||| |||||| ||||||| ||||  | || |||||||||||||| |||| ||||||||||||||    
T  13086150 tggtatagtgttctagtcgcccgttatggcgaggttggagggaggttggaggttgggggccggagttgttctt 13086078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 62 - 235
Target Start/End: Complemental strand, 11469279 - 11469106
Alignment:
Q  62 aaaggagtttggagggttgg-ggtcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattg 160  Q
    |||||||||||||||  ||| ||| ||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||  | |||| |||||| |||    
T  11469279 aaaggagtttggaggtctggcggttaggaagttgaaagagtttaatatagcattgctaggtaaatggtgttggaggatgttggtagataaagaagggttg 11469180  T
Q  161 tggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttcttct 235  Q
    ||||||| ||| ||||||| ||| ||| | ||  ||||||||||||||||||  ||||  |||||||||||||||    
T  11469179 tggtatcgtgtgttagtcgcccgatatggtgacgtaggtgggaggttggaggaagggg-gcggagttgttcttct 11469106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 63 - 235
Target Start/End: Complemental strand, 33640627 - 33640455
Alignment:
Q  63 aaggagtttggagggtt-ggggtcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgt 161  Q
    ||||||||||||||||| ||||| ||  ||||||||||||||||||| || || ||||||||||||||||||||||||||| ||||||| |  || || |    
T  33640627 aaggagtttggagggttaggggttagacagttgaaggagtttaatgttgccttactagggaaatggtgttggaggatgttagtggataggggtggttttt 33640528  T
Q  162 ggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttcttct 235  Q
    |||||   |||||||||| ||||||| ||||  |  |||||||||||||||| |||| ||||||||||||||||    
T  33640527 ggtatagagttttagtcgcccgttatggcgaggtgtgtgggaggttggaggttgggg-ccggagttgttcttct 33640455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 90 - 235
Target Start/End: Complemental strand, 19256322 - 19256177
Alignment:
Q  90 agttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcgtccgttatcg 189  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||| |  || || ||||||   |||||||||| ||||||| |    
T  19256322 agttgaaggagtttaatgttgcattactagggaaatggtgttggaggatgttagtggataggggtggtttttggtatagagttttagtcgcccgttatgg 19256223  T
Q  190 cgaaataggtgggaggttggaggtgggggtccggagttgttcttct 235  Q
    |||  |  |||||||||||||||| |||| || |||||||||||||    
T  19256222 cgaggtgtgtgggaggttggaggttgggggccagagttgttcttct 19256177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 59 - 218
Target Start/End: Complemental strand, 21549562 - 21549402
Alignment:
Q  59 taaaaaggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaagga 157  Q
    ||||||||||  |||||| |||||| | ||||  ||||||||||||||| | || || ||||| ||||||||||||||||||||| | |||||| ||||     
T  21549562 taaaaaggagcatggaggtttgggggtgaggagattgaaggagtttaatattgctttactaggtaaatggtgttggaggatgttagttgatagataaggg 21549463  T
Q  158 ttgtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtggggg 218  Q
    ||||| |||||  ||||||||| ||||||| ||||| ||| ||||||||||||||||||||    
T  21549462 ttgtgatatcagattttagtcgcccgttatggcgaagtagatgggaggttggaggtggggg 21549402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 61 - 235
Target Start/End: Original strand, 502960 - 503135
Alignment:
Q  61 aaaaggagtttggagggtt-ggggtcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggatt 159  Q
    ||||||||||||||||||| ||||| ||  ||||||||||||||||| | || || ||||||||||||||||||||||||||| ||||||| |  || ||    
T  502960 aaaaggagtttggagggttaggggttagacagttgaaggagtttaatattgccttactagggaaatggtgttggaggatgttagtggataggggtggttt 503059  T
Q  160 gtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttcttct 235  Q
     || |||   |||||||||| ||||||| ||||  |  |||||||||||||||  |||| ||||||||||||||||    
T  503060 ttgatatagagttttagtcgcccgttatggcgaggtgtgtgggaggttggaggatgggggccggagttgttcttct 503135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 226
Target Start/End: Original strand, 23346922 - 23347061
Alignment:
Q  87 ggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcgtccgtta 186  Q
    |||| ||||||||||||||| |||| ||| |||| |||||||||||| ||||| |  |||||||||  || |||||||||   |||||||||| | | ||    
T  23346922 ggaaattgaaggagtttaatttagctttgttaggaaaatggtgttggcggatgctggtggatagaggtggtttgtggtatagggttttagtcgccaggta 23347021  T
Q  187 tcgcgaaataggtgggaggttggaggtgggggtccggagt 226  Q
    | ||||| ||||||| ||||||||||| |||| |||||||    
T  23347022 tggcgaattaggtggcaggttggaggttgggggccggagt 23347061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 225
Target Start/End: Complemental strand, 15674514 - 15674376
Alignment:
Q  87 ggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcgtccgtta 186  Q
    |||| ||||||||||||||| |||| ||| |||| |||||||||||| |||||||  ||||  |||| || |||||||||   |||||||||| | | ||    
T  15674514 ggaaattgaaggagtttaatttagctttgttaggaaaatggtgttggcggatgttggtggaccgagatggtttgtggtatagggttttagtcgccagata 15674415  T
Q  187 tcgcgaaataggtgggaggttggaggtgggggtccggag 225  Q
    | | ||| ||||||| ||||||||||| |||| ||||||    
T  15674414 tggtgaattaggtggcaggttggaggttgggggccggag 15674376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 17078731 - 17078793
Alignment:
Q  173 ttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttcttct 235  Q
    ||||||| ||||||| ||||| ||||||||||||||||||| |||| ||||||||||||||||    
T  17078731 ttagtcgcccgttatggcgaagtaggtgggaggttggaggttgggggccggagttgttcttct 17078793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 235
Target Start/End: Original strand, 11060321 - 11060465
Alignment:
Q  91 gttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcgtccgttatcgc 190  Q
    |||||| || |||||||| |  ||| |||| || ||||||||||||||| || | |||||    || || |||||||  || ||||| | ||||||| ||    
T  11060321 gttgaaagaatttaatgtggttttgttaggtaagtggtgttggaggatgctagttgataggagtggcttttggtatcgagtcttagttgcccgttatggc 11060420  T
Q  191 gaaataggtgggaggttggaggtgggggtccggagttgttcttct 235  Q
    ||| ||||||||||||||||||| |||| ||||||||||||||||    
T  11060421 gaattaggtgggaggttggaggttgggggccggagttgttcttct 11060465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 18050979 - 18051052
Alignment:
Q  162 ggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttcttct 235  Q
    ||||||| || ||||||| |  |||| ||||| ||||||||||||||||||| |||| ||||||||||||||||    
T  18050979 ggtatcaagtcttagtcgccgattatggcgaagtaggtgggaggttggaggttgggggccggagttgttcttct 18051052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 17873367 - 17873406
Alignment:
Q  173 ttagtcgtccgttatcgcgaaataggtgggaggttggagg 212  Q
    ||||||||||||||| ||||| ||||||||||||||||||    
T  17873367 ttagtcgtccgttatggcgaagtaggtgggaggttggagg 17873406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 209
Target Start/End: Complemental strand, 26206054 - 26205904
Alignment:
Q  60 aaaaaggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggat 158  Q
    |||||||||| ||| || |||||| | ||||  ||||||||||||||| || ||||| || |||||||||||||| || | ||  | |||||||  || |    
T  26206054 aaaaaggagtgtggcggtttgggggtgaggagattgaaggagtttaatataacattgttaaggaaatggtgttggcggttattggttgatagaggtggtt 26205955  T
Q  159 tgtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttgg 209  Q
    ||||||||   |||||||||| | | ||| ||||| ||||||| |||||||    
T  26205954 tgtggtatacggttttagtcgccagatatggcgaattaggtggcaggttgg 26205904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 10362706 - 10362670
Alignment:
Q  199 tgggaggttggaggtgggggtccggagttgttcttct 235  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  10362706 tgggaggttggaggtggggggccggagtggttcttct 10362670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 6e-58; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 59 - 235
Target Start/End: Original strand, 35122132 - 35122309
Alignment:
Q  59 taaaaaggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaagga 157  Q
    ||||||||||| ||||||||||||| | |||| ||||| | |||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  35122132 taaaaaggagtctggagggttgggggttaggaggttgaggaagtttaatgttgcattactagggaaatggtgttggaggatgttagtggatagagaagga 35122231  T
Q  158 ttgtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttcttct 235  Q
    ||||||||||| |||||||||| ||||||| ||||||||||||| |||||||||||||||| || |||||||||||||    
T  35122232 ttgtggtatcaggttttagtcgcccgttatggcgaaataggtggaaggttggaggtggggggccagagttgttcttct 35122309  T

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Target: chr5; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 59 - 235
Target Start/End: Original strand, 30509473 - 30509650
Alignment:
Q  59 taaaaaggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaagga 157  Q
    |||||||||||| |||||||||||| | |||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||| | |||||||| ||     
T  30509473 taaaaaggagttaggagggttgggggttaggaagttgaaggaatttaatgtagctttgctagggaaatggtgttggaggttgttagtagatagagatggc 30509572  T
Q  158 ttgtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttcttct 235  Q
    ||||||||||| |||||||||| ||||||| |||| || |||||||| ||||||||||||| ||||||||||||||||    
T  30509573 ttgtggtatcaggttttagtcgcccgttatggcgagatcggtgggagattggaggtggggggccggagttgttcttct 30509650  T

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Target: chr5; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 59 - 235
Target Start/End: Original strand, 30549813 - 30549990
Alignment:
Q  59 taaaaaggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaagga 157  Q
    |||||||||||| |||||||||||| | |||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||| | |||||||| ||     
T  30549813 taaaaaggagttaggagggttgggggttaggaagttgaaggaatttaatgtagctttgctagggaaatggtgttggaggttgttagtagatagagatggc 30549912  T
Q  158 ttgtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttcttct 235  Q
    ||||||||||| |||||||||| ||||||| |||| || |||||||| ||||||||||||| ||||||||||||||||    
T  30549913 ttgtggtatcaggttttagtcgcccgttatggcgagatcggtgggagattggaggtggggggccggagttgttcttct 30549990  T

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Target: chr5; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 59 - 226
Target Start/End: Complemental strand, 38358181 - 38358013
Alignment:
Q  59 taaaaaggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaagga 157  Q
    |||||||||||||||||| |||||| | ||||  ||||||||||||||| | || || ||||| ||||||||||||||||||||| | ||||||||||      
T  38358181 taaaaaggagtttggaggtttgggggttaggagattgaaggagtttaatattgctttactaggtaaatggtgttggaggatgttagttgatagagaagag 38358082  T
Q  158 ttgtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagt 226  Q
    |||||||||||  ||||||||| ||||||| ||||| |||||||||||||||||||||||| |||||||    
T  38358081 ttgtggtatcagattttagtcgcccgttatggcgaagtaggtgggaggttggaggtggggggccggagt 38358013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 80 - 234
Target Start/End: Complemental strand, 6867056 - 6866902
Alignment:
Q  80 ggggtcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcg 179  Q
    ||||| |||||||||||||| ||||||||  | || ||||| ||||||||| ||||||||||| |  |||||||||  ||||||||||||||||||||||    
T  6867056 ggggtaaggaagttgaaggaatttaatgttcctttactaggtaaatggtgtcggaggatgttagtttatagagaagagttgtggtatcatgttttagtcg 6866957  T
Q  180 tccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttcttc 234  Q
     ||||||| ||||| |||||||||||||||||||||||| || |||| |||||||    
T  6866956 cccgttatggcgaagtaggtgggaggttggaggtggggggccagagtggttcttc 6866902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 61 - 234
Target Start/End: Original strand, 22094678 - 22094852
Alignment:
Q  61 aaaaggagtttggagggtt-ggggtcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggatt 159  Q
    ||||||||||||||||||| ||||| ||  ||||||||||||||||| | || || |||||||| |||||||||||||||||| ||||||| |  || ||    
T  22094678 aaaaggagtttggagggttaggggttagacagttgaaggagtttaatattgctttactagggaagtggtgttggaggatgttagtggataggggtggttt 22094777  T
Q  160 gtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttcttc 234  Q
     ||||||   ||||||||||  |||||| ||||  |  |||||||||||||||  |||| ||| |||||||||||    
T  22094778 ttggtatagagttttagtcgctcgttatggcgaggtttgtgggaggttggaggatgggggccgaagttgttcttc 22094852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 117 - 235
Target Start/End: Original strand, 19512950 - 19513068
Alignment:
Q  117 tagggaaatggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtggg 216  Q
    |||| ||||||||||||||||||||  | |||| || ||| |||||||||  |||| | |||| ||||||| ||||  | ||||||||||||||||||||    
T  19512950 taggtaaatggtgttggaggatgttggtcgataaagtaggtttgtggtatagtgttcttgtcgcccgttatggcgaggttggtgggaggttggaggtggg 19513049  T
Q  217 ggtccggagttgttcttct 235  Q
    || ||||||||||||||||    
T  19513050 gggccggagttgttcttct 19513068  T

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Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 226
Target Start/End: Original strand, 10486346 - 10486514
Alignment:
Q  60 aaaaaggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgct-agggaaatggtgttggaggatgttaatggatagagaagga 157  Q
    |||||||||| |||||| |||||| | || ||||||||||||||||||   || ||| | |||||||||||||||| |||||||  |||| | ||| ||     
T  10486346 aaaaaggagtatggaggtttgggggtgagaaagttgaaggagtttaatagtgctttgtttagggaaatggtgttggcggatgttggtggacatagatggt 10486445  T
Q  158 ttgtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagt 226  Q
    |||||||||   |||||||| | | | ||| ||||| ||||||| ||||||||||| |||| |||||||    
T  10486446 ttgtggtatacggttttagttgccaggtatggcgaattaggtggcaggttggaggttgggggccggagt 10486514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 31864439 - 31864352
Alignment:
Q  122 aaatggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttgg 209  Q
    ||||||||||||||||||||| ||||||||| ||| || ||||||  ||||||| ||  | | ||| |||||||||||||||||||||    
T  31864439 aaatggtgttggaggatgttagtggatagaggaggcttatggtatagtgttttaatcaccagctatggcgaaataggtgggaggttgg 31864352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 209
Target Start/End: Complemental strand, 31864889 - 31864797
Alignment:
Q  117 tagggaaatggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttgg 209  Q
    |||| ||||||||||||||||||||| ||||||||| ||| || ||||||   |||||| ||  | | ||| |||||||||||||||||||||    
T  31864889 taggtaaatggtgttggaggatgttagtggatagaggaggcttatggtatagggttttaatcaccagctatggcgaaataggtgggaggttgg 31864797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 225
Target Start/End: Complemental strand, 34481661 - 34481495
Alignment:
Q  60 aaaaaggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggat 158  Q
    |||||||||| ||| || |||||| | |||||  |||||||||||||  |||| ||| ||||||||||||||||| |||||||  | || ||||  || |    
T  34481661 aaaaaggagtatggtggtttgggggtgaggaaagtgaaggagtttaacatagctttgttagggaaatggtgttggcggatgttggtagacagaggtgggt 34481562  T
Q  159 tgtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggag 225  Q
    ||||||||   ||||||| || | | ||| ||||  ||||||| ||||||||||| |||| ||||||    
T  34481561 tgtggtatagggttttagccgccaggtatggcgagttaggtggcaggttggaggttgggggccggag 34481495  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 231
Target Start/End: Original strand, 20208276 - 20208318
Alignment:
Q  189 gcgaaataggtgggaggttggaggtgggggtccggagttgttc 231  Q
    ||||| ||||||||||||||||||| |||| ||||||||||||    
T  20208276 gcgaagtaggtgggaggttggaggttgggggccggagttgttc 20208318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 6049820 - 6049759
Alignment:
Q  173 ttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttcttc 234  Q
    ||||||| ||||||| | ||| |||||||||||||||||||  ||| || ||||||||||||    
T  6049820 ttagtcgcccgttatggtgaagtaggtgggaggttggaggttaggggccagagttgttcttc 6049759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 166
Target Start/End: Complemental strand, 380611 - 380507
Alignment:
Q  63 aaggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgt 161  Q
    ||||||| |||||| |||||| ||||| |||||| ||||||||||   |  || ||||| |||||||||||| |||||||  |||||||||| || || |    
T  380611 aaggagtatggaggtttgggggtcaggcagttgagggagtttaatagtgtcttactaggcaaatggtgttggcggatgttggtggatagagatggtttct 380512  T
Q  162 ggtat 166  Q
    |||||    
T  380511 ggtat 380507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 152
Target Start/End: Original strand, 22174442 - 22174514
Alignment:
Q  80 ggggtcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagag 152  Q
    ||||| ||| ||||||||||||||||  |||| ||| |||| | ||||||||||||| ||||  |||||||||    
T  22174442 ggggtgaggcagttgaaggagtttaacatagctttgttaggtagatggtgttggaggttgttggtggatagag 22174514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 30723566 - 30723522
Alignment:
Q  97 ggagtttaatgtagcattgctagggaaatggtgttggaggatgtt 141  Q
    |||||||||| |||| ||| |||||||||||||||||||| ||||    
T  30723566 ggagtttaatttagcgttgttagggaaatggtgttggaggttgtt 30723522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 80 - 234
Target Start/End: Complemental strand, 35488529 - 35488375
Alignment:
Q  80 ggggtcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcg 179  Q
    ||||| ||||||||||||||||||||||| || || ||||| ||||||||||||||| ||||| | ||||||||||| ||||||||||||||||||||||    
T  35488529 ggggttaggaagttgaaggagtttaatgttgctttactaggtaaatggtgttggaggttgttagttgatagagaagggttgtggtatcatgttttagtcg 35488430  T
Q  180 tccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttcttc 234  Q
     ||||||| ||||| |||||||||||||||||||||||| ||| ||| |||||||    
T  35488429 cccgttatggcgaagtaggtgggaggttggaggtggggggccgaagtggttcttc 35488375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 60 - 226
Target Start/End: Original strand, 28399977 - 28400144
Alignment:
Q  60 aaaaaggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggat 158  Q
    ||||||||||||||||| |||||| | |||   ||||||||||||||| | || || ||||| ||||||||||||||||||||| | |||||||||||      
T  28399977 aaaaaggagtttggaggtttgggggttaggcgattgaaggagtttaatattgctttactaggtaaatggtgttggaggatgttagtcgatagagaaggga 28400076  T
Q  159 tgtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagt 226  Q
    |||||||||| ||||||||||  |||||| ||||| |||||||||||||||||||||||| |||||||    
T  28400077 tgtggtatcaggttttagtcgctcgttatggcgaagtaggtgggaggttggaggtggggggccggagt 28400144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 59 - 186
Target Start/End: Original strand, 8065687 - 8065815
Alignment:
Q  59 taaaaaggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaagga 157  Q
    ||||||||||  |||||| |||||| |||||||||||||| |||||||||| || || ||||| ||||| ||||||||| ||||| | |||||||||||     
T  8065687 taaaaaggagcatggaggtttgggggtcaggaagttgaagaagtttaatgttgctttactaggtaaatgatgttggaggttgttagttgatagagaaggg 8065786  T
Q  158 ttgtggtatcatgttttagtcgtccgtta 186  Q
    |||||||||||||||||||||| ||||||    
T  8065787 ttgtggtatcatgttttagtcgcccgtta 8065815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 61 - 235
Target Start/End: Complemental strand, 15018389 - 15018214
Alignment:
Q  61 aaaaggagtttggagggttg-gggtcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggatt 159  Q
    |||||||||||||||||||  |||| ||  ||||||||||||||||| | || ||  |||||||||||||||||||| ||| | ||||||| |  |||||    
T  15018389 aaaaggagtttggagggttatgggttagacagttgaaggagtttaatattgccttattagggaaatggtgttggaggttgtcagtggataggggtggatt 15018290  T
Q  160 gtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttcttct 235  Q
     ||||||   ||||||||||  |||||| ||||| || |||||||||||||||| |||| ||| ||||||||||||    
T  15018289 ttggtatagagttttagtcgctcgttatggcgaagtatgtgggaggttggaggttgggggccgaagttgttcttct 15018214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 56 - 209
Target Start/End: Complemental strand, 36804836 - 36804682
Alignment:
Q  56 ttgtaaaaaggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaa 154  Q
    |||||||| ||||  |||| |||||||| | ||||||||||| ||||||||| | || || ||||| ||||||||||||||||||||| | || ||||||    
T  36804836 ttgtaaaagggagcatggatggttgggggttaggaagttgaaagagtttaatattgctttactaggaaaatggtgttggaggatgttagtagagagagaa 36804737  T
Q  155 ggattgtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttgg 209  Q
    || |||||||||| ||||||||||| ||||||| ||||   | ||||||||||||    
T  36804736 ggtttgtggtatcgtgttttagtcgcccgttatggcgaggcatgtgggaggttgg 36804682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 233
Target Start/End: Original strand, 9668435 - 9668607
Alignment:
Q  62 aaaggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattg 160  Q
    |||||||| || |||||||||| | |||| ||||| |||||||||  | || ||| |||| |||| |||||||||||||||  | ||||||| ||| |||    
T  9668435 aaaggagtctgaagggttgggggttaggaggttgagggagtttaactttgctttgttaggtaaatagtgttggaggatgttggtagatagagtagggttg 9668534  T
Q  161 tggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttctt 233  Q
    ||||||  |||| |||||| ||||||| ||||  | || |||||||||||||| |||| ||||||||||||||    
T  9668535 tggtatagtgttctagtcgcccgttatggcgaggttggagggaggttggaggttgggggccggagttgttctt 9668607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 192
Target Start/End: Original strand, 11233919 - 11234050
Alignment:
Q  62 aaaggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattg 160  Q
    |||||||| ||||||||||||| | |||||||||| |||||||||| | || ||| |||| ||||||||||||| ||||||  | ||||||| ||| |||    
T  11233919 aaaggagtctggagggttgggggttaggaagttgagggagtttaattttgctttgttaggtaaatggtgttggacgatgttggtagatagagtaggtttg 11234018  T
Q  161 tggtatcatgttttagtcgtccgttatcgcga 192  Q
    ||||||  |||| |||||| ||||||| ||||    
T  11234019 tggtatagtgttctagtcgcccgttatggcga 11234050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 226
Target Start/End: Original strand, 26894067 - 26894206
Alignment:
Q  87 ggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcgtccgtta 186  Q
    |||||||||||||||||||| || | ||| |||| |||||||||||| |||||||  |||| | ||  || |||||||||   |||||||||| | | ||    
T  26894067 ggaagttgaaggagtttaatttaactttgttaggaaaatggtgttggcggatgttggtggacataggtggtttgtggtatagggttttagtcgccaggta 26894166  T
Q  187 tcgcgaaataggtgggaggttggaggtgggggtccggagt 226  Q
    | ||||||||||||| ||||||||||| |||| |||||||    
T  26894167 tggcgaaataggtggcaggttggaggttgggggccggagt 26894206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 226
Target Start/End: Original strand, 26899506 - 26899645
Alignment:
Q  87 ggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcgtccgtta 186  Q
    |||||||||||||||||||| || | ||| |||| |||||||||||| |||||||  |||| | ||  || |||||||||   |||||||||| | | ||    
T  26899506 ggaagttgaaggagtttaatttaactttgttaggaaaatggtgttggcggatgttggtggacataggtggtttgtggtatagggttttagtcgccaggta 26899605  T
Q  187 tcgcgaaataggtgggaggttggaggtgggggtccggagt 226  Q
    | ||||||||||||| ||||||||||| |||| |||||||    
T  26899606 tggcgaaataggtggcaggttggaggttgggggccggagt 26899645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 124 - 206
Target Start/End: Complemental strand, 16213826 - 16213744
Alignment:
Q  124 atggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggt 206  Q
    ||||||||||| ||||||| | || |||||||| | |||||||||||||||||||| ||||||| ||||| ||||||||||||    
T  16213826 atggtgttggaagatgttagttgacagagaagggtcgtggtatcatgttttagtcgcccgttatggcgaagtaggtgggaggt 16213744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 61 - 234
Target Start/End: Original strand, 22724867 - 22725041
Alignment:
Q  61 aaaaggagtttggagggttgg-ggtcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggatt 159  Q
    |||||||||| ||||| |||| ||| | | |||||||||| |||||||| || || ||||| ||||||||||||||||||||| ||||||| |  || ||    
T  22724867 aaaaggagttcggaggtttggaggttaagcagttgaaggaatttaatgttgccttactaggaaaatggtgttggaggatgttagtggataggggtggttt 22724966  T
Q  160 gtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttcttc 234  Q
     |||||| | | | |||||| ||  ||| ||||  |||| |||||||||||||  |||| |||||||||||||||    
T  22724967 ttggtataaagatatagtcgcccactatggcgaggtaggcgggaggttggaggatgggggccggagttgttcttc 22725041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 165
Target Start/End: Original strand, 44028649 - 44028753
Alignment:
Q  62 aaaggagtttggagggttggg-gtcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattg 160  Q
    |||||||| |||||| ||||| || ||  ||||||||||||||||||  || |||||||| || ||||| |||||||||||| |||||||||| || |||    
T  44028649 aaaggagtatggaggtttgggtgttagacagttgaaggagtttaatgaggcgttgctaggtaagtggtgctggaggatgttagtggatagagatgggttg 44028748  T
Q  161 tggta 165  Q
    |||||    
T  44028749 tggta 44028753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 1380681 - 1380619
Alignment:
Q  173 ttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttcttct 235  Q
    ||||||| ||||||| ||||| |||| |||||||||||||| |||| ||||||||||||||||    
T  1380681 ttagtcgcccgttatggcgaagtaggcgggaggttggaggttgggggccggagttgttcttct 1380619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 141
Target Start/End: Complemental strand, 13550830 - 13550748
Alignment:
Q  60 aaaaaggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgtt 141  Q
    |||||||||| ||| || |||||| | ||||  ||||||||||||||| |||||||| |||||||||||||||||||| ||||    
T  13550830 aaaaaggagtgtggcggtttgggggtgaggagattgaaggagtttaatatagcattgttagggaaatggtgttggaggttgtt 13550748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 141
Target Start/End: Complemental strand, 13551283 - 13551201
Alignment:
Q  60 aaaaaggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgtt 141  Q
    |||||||||| ||| || |||||| | ||||  ||||||||||||||| |||||||| |||||||||||||||||||| ||||    
T  13551283 aaaaaggagtgtggcggtttgggggtgaggagattgaaggagtttaatatagcattgttagggaaatggtgttggaggttgtt 13551201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 235
Target Start/End: Complemental strand, 11028552 - 11028407
Alignment:
Q  90 agttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcgtccgttatcg 189  Q
    |||||||||||||||||   || ||| |||| || ||||||||||||||| |  | |||||    || |||||||| |  |||||||||| ||||||  |    
T  11028552 agttgaaggagtttaatcaggctttgttaggaaagtggtgttggaggatgcttgttgataggagtggtttgtggtaccgagttttagtcgcccgttacgg 11028453  T
Q  190 cgaaataggtgggaggttggaggtgggggtccggagttgttcttct 235  Q
    |||| ||||||| ||||||||||  |||| || |||||||||||||    
T  11028452 cgaagtaggtggaaggttggaggatgggggccagagttgttcttct 11028407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 136
Target Start/End: Original strand, 33583855 - 33583931
Alignment:
Q  61 aaaaggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggagg 136  Q
    ||||||||| ||||||||||||| | ||| |||||| |||||||||| |||| ||| || | |||||||||||||||    
T  33583855 aaaaggagtatggagggttgggggtaaggcagttgagggagtttaatatagctttgttaagtaaatggtgttggagg 33583931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 166
Target Start/End: Complemental strand, 12646229 - 12646127
Alignment:
Q  65 ggagtttggagggttggg-gtcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgtgg 163  Q
    ||||| |||||||||||| || |||| |||||  ||||||||  | |  ||| |||| ||||||||||||||| ||||| | |||||||| |||||||||    
T  12646229 ggagtatggagggttgggtgttaggaggttgagagagtttaactttgttttgttaggaaaatggtgttggaggttgttagtagatagagatggattgtgg 12646130  T
Q  164 tat 166  Q
    |||    
T  12646129 tat 12646127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 152
Target Start/End: Complemental strand, 6824124 - 6824031
Alignment:
Q  60 aaaaaggagtttggagggttggg-gtcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagag 152  Q
    |||||||||  || ||||||||| || ||| ||||||||||||||||| |||| ||  || | |||||||||||||| |||||  |||||||||    
T  6824124 aaaaaggagcatgaagggttgggagtgaggcagttgaaggagtttaatttagccttattaagcaaatggtgttggagaatgttggtggatagag 6824031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 59 - 226
Target Start/End: Complemental strand, 36709624 - 36709456
Alignment:
Q  59 taaaaaggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaagga 157  Q
    ||||||||||  |||||| |||||| | ||||||||||||||||||||| | || || ||||| ||||||||||||||||||||| | || ||||||||     
T  36709624 taaaaaggagcatggaggtttgggggttaggaagttgaaggagtttaatattgctttactaggtaaatggtgttggaggatgttagttgacagagaaggg 36709525  T
Q  158 ttgtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagt 226  Q
    |||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||| |||||||    
T  36709524 ttgtggtatcatgttttagtcgcccgttatggcgaagtaggtgggaggttggaggtggggggccggagt 36709456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 60 - 226
Target Start/End: Complemental strand, 45684889 - 45684722
Alignment:
Q  60 aaaaaggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggat 158  Q
    ||||||||||||||||| |||||| | |||   ||||||||||||||| | || || ||||| ||||||||||||||||||||| | |||||||||||      
T  45684889 aaaaaggagtttggaggtttgggggttaggcgattgaaggagtttaatattgctttactaggtaaatggtgttggaggatgttagtcgatagagaagggc 45684790  T
Q  159 tgtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagt 226  Q
    |||||||||| ||||||||||  |||||| ||||| |||||||||||||||||||||||| |||||||    
T  45684789 tgtggtatcaggttttagtcgctcgttatggcgaagtaggtgggaggttggaggtggggggccggagt 45684722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 59 - 218
Target Start/End: Original strand, 15481184 - 15481344
Alignment:
Q  59 taaaaaggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaagga 157  Q
    ||||||||||  |||||| |||||| | ||||||||||||||||||||| | || ||  |||| ||||||||||||||||||||| | || ||||||||     
T  15481184 taaaaaggagcatggaggtttgggggttaggaagttgaaggagtttaatattgctttattaggtaaatggtgttggaggatgttagttgacagagaaggg 15481283  T
Q  158 ttgtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtggggg 218  Q
    ||||||||||||||| |||||| ||||||| || || ||||||||||||||||||||||||    
T  15481284 ttgtggtatcatgttctagtcgcccgttatggcaaagtaggtgggaggttggaggtggggg 15481344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 59 - 218
Target Start/End: Original strand, 42674865 - 42675025
Alignment:
Q  59 taaaaaggagtttggagggttgg-ggtcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaagga 157  Q
    ||||||||||  |||||| |||| ||| ||||  ||||||||||||||| | |  || ||||| ||||||||||||||||||||| | |||||||||||     
T  42674865 taaaaaggagcatggaggtttggaggtgaggagattgaaggagtttaatattgttttactaggtaaatggtgttggaggatgttagttgatagagaaggg 42674964  T
Q  158 ttgtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtggggg 218  Q
    ||||||||||| |||||||||| ||||||| ||||| ||| ||||||||||||||||||||    
T  42674965 ttgtggtatcaggttttagtcgcccgttatggcgaagtagatgggaggttggaggtggggg 42675025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 62 - 235
Target Start/End: Original strand, 21739952 - 21740126
Alignment:
Q  62 aaaggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattg 160  Q
    |||||||| ||||||||||||| | ||||  |||| |||||||||| | || ||| |||| ||||||||||||||||||||  | ||||||| ||| ||     
T  21739952 aaaggagtctggagggttgggggtaaggagattgagggagtttaattttgctttgttaggtaaatggtgttggaggatgttggtagatagagtaggttta 21740051  T
Q  161 tggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttcttct 235  Q
    ||||||  |||| |||||| ||||||| ||||| ||||||||||||||||||| |||| ||||||||||||||||    
T  21740052 tggtattgtgttctagtcgcccgttatggcgaagtaggtgggaggttggaggttgggggccggagttgttcttct 21740126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 56 - 213
Target Start/End: Original strand, 24926111 - 24926269
Alignment:
Q  56 ttgtaaaaaggagtttggagggttg-gggtcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaa 154  Q
    |||||||||||||  |||||||||| |||| ||||||||||| ||||||||| | || || ||||  ||||||||||||||||||||| |||||||||||    
T  24926111 ttgtaaaaaggagcatggagggttgagggttaggaagttgaaagagtttaatattgccttactagaaaaatggtgttggaggatgttagtggatagagaa 24926210  T
Q  155 ggattgtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggt 213  Q
    || |||||||||| ||||||||||| |||||||  |||   | ||||||||||||||||    
T  24926211 ggtttgtggtatcgtgttttagtcgcccgttatgacgaggcatgtgggaggttggaggt 24926269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 63 - 235
Target Start/End: Original strand, 14863895 - 14864068
Alignment:
Q  63 aaggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgt 161  Q
    ||||||| ||||||||||||| | ||||  |||| |||||||||| | |||||| |||| ||||||||||||||||||||  | |||| || ||| || |    
T  14863895 aaggagtctggagggttgggggttaggagattgagggagtttaattttgcattgttaggtaaatggtgttggaggatgttggtcgataaagtaggtttat 14863994  T
Q  162 ggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttcttct 235  Q
    |||||  |||| | |||| | ||||| ||||  | |||||||||||||||||||||| ||||||||||||||||    
T  14863995 ggtatagtgttcttgtcgcctgttatggcgaggtgggtgggaggttggaggtggggggccggagttgttcttct 14864068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 148 - 218
Target Start/End: Original strand, 18366098 - 18366168
Alignment:
Q  148 tagagaaggattgtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtggggg 218  Q
    ||||||||| ||||||| |||||||||||||| ||||||| ||||| ||||||||||||||||||||||||    
T  18366098 tagagaagggttgtggtttcatgttttagtcgcccgttatggcgaagtaggtgggaggttggaggtggggg 18366168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 87 - 226
Target Start/End: Original strand, 6175933 - 6176072
Alignment:
Q  87 ggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcgtccgtta 186  Q
    |||| ||||||||||||||| |||| ||| |||| |||||||||||| ||||| |  |||| ||||  || |||||||||   |||||||||| | | ||    
T  6175933 ggaaattgaaggagtttaatttagctttgttaggaaaatggtgttggcggatgctggtggacagaggtggtttgtggtatagggttttagtcgccaggta 6176032  T
Q  187 tcgcgaaataggtgggaggttggaggtgggggtccggagt 226  Q
    | ||||| ||||||| ||||||||||| |||| |||||||    
T  6176033 tggcgaattaggtggcaggttggaggttgggggccggagt 6176072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 225
Target Start/End: Complemental strand, 29310093 - 29309955
Alignment:
Q  87 ggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcgtccgtta 186  Q
    |||| ||||||||||||||| |||||||| |||| |||||||||||| |||||||  |||| | ||  || |||||||||   |||||||||| | | ||    
T  29310093 ggaaattgaaggagtttaatttagcattgttaggaaaatggtgttggcggatgttggtggacaaaggtggtttgtggtatagggttttagtcgccaggta 29309994  T
Q  187 tcgcgaaataggtgggaggttggaggtgggggtccggag 225  Q
    |  |||| ||||||| ||||||||||| |||| ||||||    
T  29309993 tgccgaattaggtggcaggttggaggttgggggccggag 29309955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 102 - 234
Target Start/End: Original strand, 54439577 - 54439715
Alignment:
Q  102 ttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcgtccgttatcgcgaaatagg--- 198  Q
    |||||||  ||||| |||| ||||| ||||||||||| ||| ||||||||||||| ||||||||| | ||||||||| |  | ||| ||||||||||       
T  54439577 ttaatgtttcattgttaggtaaatgatgttggaggatattagtggatagagaaggtttgtggtattacgttttagtcattagatatggcgaaataggtcg 54439676  T
Q  199 ----tgggaggttggaggtgggggtccggagttgttcttc 234  Q
        ||||||||||||||| ||||| ||||||||||||||    
T  54439677 gagatgggaggttggaggttggggt-cggagttgttcttc 54439715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 166
Target Start/End: Complemental strand, 55367320 - 55367216
Alignment:
Q  62 aaaggagtttggagggttggggtcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgt 161  Q
    |||||||| ||| || | ||||| |||||||||||||| |||||| | || ||| |||| ||||||||||||||||||||| | |||||||  || ||||    
T  55367320 aaaggagtatgggggttgggggtgaggaagttgaaggaatttaatcttgcgttgttaggaaaatggtgttggaggatgttagttgatagaggtgggttgt 55367221  T
Q  162 ggtat 166  Q
    |||||    
T  55367220 ggtat 55367216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 43284836 - 43284885
Alignment:
Q  117 tagggaaatggtgttggaggatgttaatggatagagaaggattgtggtat 166  Q
    ||||||||||||||| ||||||||||||||||| ||| ||||||||||||    
T  43284836 tagggaaatggtgttagaggatgttaatggataaagagggattgtggtat 43284885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 235
Target Start/End: Complemental strand, 50544825 - 50544761
Alignment:
Q  170 gttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttcttct 235  Q
    |||||||||| ||||| | ||||| ||||||||||||||||||| |||| ||||||||||||||||    
T  50544825 gttttagtcgcccgtt-tggcgaagtaggtgggaggttggaggtcgggggccggagttgttcttct 50544761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 209
Target Start/End: Original strand, 43121104 - 43121251
Alignment:
Q  63 aaggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgt 161  Q
    |||||||||||||| |||||| | ||  |||||||| ||||||||   || ||| |||| |||||||||||||||||| |  | |||||    || || |    
T  43121104 aaggagtttggaggtttgggggtgagatagttgaagaagtttaatcaggctttgttaggaaaatggtgttggaggatgcttgttgataggagtggttttt 43121203  T
Q  162 ggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttgg 209  Q
    ||||||  |||||||||| ||||||| ||||||||||| |||||||||    
T  43121204 ggtatcgagttttagtcgcccgttatggcgaaataggtaggaggttgg 43121251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 235
Target Start/End: Complemental strand, 48192453 - 48192336
Alignment:
Q  117 tagggaaatggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtggg 216  Q
    ||||||| ||||||||||||||| || | |||||    || || |||||||  ||||||||||||||| || ||||| ||||||||||||||||||| ||    
T  48192453 tagggaagtggtgttggaggatgctagttgataggagtggcttttggtatcgagttttagtcgtccgt-atggcgaagtaggtgggaggttggaggttgg 48192355  T
Q  217 ggtccggagttgttcttct 235  Q
    ||   |||||| |||||||    
T  48192354 gggttggagtttttcttct 48192336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 163
Target Start/End: Complemental strand, 16179657 - 16179556
Alignment:
Q  63 aaggagtttggagggttggg-gtcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgt 161  Q
    ||||||| || ||||||||| || |||| ||||| |||||||||||| || ||| | |||||||||||||||||| ||||| | || || ||||| ||||    
T  16179657 aaggagtatgaagggttgggagttaggaggttgagggagtttaatgtcgctttgttggggaaatggtgttggaggttgttagtagagagtgaagggttgt 16179558  T
Q  162 gg 163  Q
    ||    
T  16179557 gg 16179556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 167
Target Start/End: Complemental strand, 30188476 - 30188395
Alignment:
Q  86 aggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgtggtatc 167  Q
    |||||||||| ||||||||||||||| ||| |||| || ||||||||| | |||||  ||||||  |||||||| |||||||    
T  30188476 aggaagttgagggagtttaatgtagcgttgttaggaaagtggtgttggcgtatgttggtggataaggaaggattatggtatc 30188395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 141
Target Start/End: Complemental strand, 10868314 - 10868234
Alignment:
Q  62 aaaggagtttggagggtt-ggggtcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgtt 141  Q
    |||||||| ||||||||| ||||| ||||  |||| |||||||||| | || ||| |||| ||||||||||||||||||||    
T  10868314 aaaggagtctggagggttaggggtaaggagattgagggagtttaattttgctttgttaggtaaatggtgttggaggatgtt 10868234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 167
Target Start/End: Complemental strand, 19566056 - 19566006
Alignment:
Q  117 tagggaaatggtgttggaggatgttaatggatagagaaggattgtggtatc 167  Q
    ||||||| ||||| |||||||||||| |||||||||| ||||| |||||||    
T  19566056 tagggaattggtggtggaggatgttagtggatagagagggattatggtatc 19566006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 166
Target Start/End: Original strand, 25024273 - 25024378
Alignment:
Q  62 aaaggagtttggagggttggg-gtcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattg 160  Q
    ||||||| ||||||||||||| || ||| |||||  |||||||||| || |  |   ||| ||||||||||||||||||||| |||||||||| || ||     
T  25024273 aaaggagcttggagggttgggagttaggcagttgggggagtttaatttatctctttaaggaaaatggtgttggaggatgttagtggatagagatggtttt 25024372  T
Q  161 tggtat 166  Q
    ||||||    
T  25024373 tggtat 25024378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 43285383 - 43285432
Alignment:
Q  117 tagggaaatggtgttggaggatgttaatggatagagaaggattgtggtat 166  Q
    |||||||||||||||||||||||||| ||||||  |  ||||||||||||    
T  43285383 tagggaaatggtgttggaggatgttagtggataacgggggattgtggtat 43285432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 59 - 223
Target Start/End: Complemental strand, 23942801 - 23942636
Alignment:
Q  59 taaaaaggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaagga 157  Q
    ||||||||||  |||||| |||||| ||||||||||||||||||||||||| || || ||||| ||||||||||||||| ||||| | |||||||||||     
T  23942801 taaaaaggagcatggaggtttgggggtcaggaagttgaaggagtttaatgttgctttactaggtaaatggtgttggaggttgttagttgatagagaaggg 23942702  T
Q  158 ttgtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccgg 223  Q
    |||||||||||||||||||||| ||||| |  |||| |||||||||||||||||||||||| ||||    
T  23942701 ttgtggtatcatgttttagtcgcccgttgtgacgaagtaggtgggaggttggaggtggggggccgg 23942636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 116 - 218
Target Start/End: Original strand, 44082496 - 44082598
Alignment:
Q  116 ctagggaaatggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgg 215  Q
    ||||| ||||||||||||||||||||| | ||||||||||| ||||||||||| |||||||||| ||||||| ||||| |||||||||||||||||||||    
T  44082496 ctaggtaaatggtgttggaggatgttagttgatagagaagggttgtggtatcaggttttagtcgcccgttatggcgaagtaggtgggaggttggaggtgg 44082595  T
Q  216 ggg 218  Q
    |||    
T  44082596 ggg 44082598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 59 - 235
Target Start/End: Complemental strand, 6901622 - 6901446
Alignment:
Q  59 taaaaaggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaagga 157  Q
    ||||||||||   |||||||||||| | |||||||||||||||||| || | || || |||   ||||||||||| |||||||||  ||||| | ||||     
T  6901622 taaaaaggagcaaggagggttgggggtaaggaagttgaaggagtttcatcttgctttactacataaatggtgttgtaggatgttag-ggataaacaaggt 6901524  T
Q  158 ttgtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttcttct 235  Q
    |||||||||||||||||||||| ||||||| ||||  ||||||||||||||||||| |||| ||| ||| ||||||||    
T  6901523 ttgtggtatcatgttttagtcgcccgttatggcgaggtaggtgggaggttggaggttgggggccgaagtggttcttct 6901446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 122 - 233
Target Start/End: Complemental strand, 12134977 - 12134866
Alignment:
Q  122 aaatggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtcc 221  Q
    ||||||||||||||||||||| || | |||||||| |||||||||||| ||||||||| ||||||| ||||  ||| | ||||||||||||| |||| ||    
T  12134977 aaatggtgttggaggatgttagtgaagagagaaggtttgtggtatcatattttagtcgcccgttatggcgaggtagcttggaggttggaggttgggggcc 12134878  T
Q  222 ggagttgttctt 233  Q
    ||||| ||||||    
T  12134877 ggagtggttctt 12134866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 63 - 235
Target Start/End: Original strand, 4987495 - 4987668
Alignment:
Q  63 aaggagtttggagggtt-ggggtcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgt 161  Q
    ||||||||||||||||| ||||| ||  ||||||||||||||||||| || || ||||||||||||||||||||||||||| ||||| | |  || || |    
T  4987495 aaggagtttggagggttaggggttagacagttgaaggagtttaatgttgccttactagggaaatggtgttggaggatgttagtggatgggggtggttttt 4987594  T
Q  162 ggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggagg-tgggggtccggagttgttcttct 235  Q
    |||||   |||||||||| ||||||| ||||  |  || |||||||||||| |||||| || |||||||||||||    
T  4987595 ggtatagagttttagtcgcccgttatggcgaggtgtgt-ggaggttggaggttggggggccagagttgttcttct 4987668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 235
Target Start/End: Original strand, 11393777 - 11393951
Alignment:
Q  62 aaaggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattg 160  Q
    |||||||| ||||||||||||| | |||   |||| |||||||||| | |||||| |||| ||||||||||||||| ||||  | ||||||| ||| |||    
T  11393777 aaaggagtctggagggttgggggttaggtgattgagggagtttaattttgcattgttaggtaaatggtgttggaggttgttggtcgatagagtaggtttg 11393876  T
Q  161 tggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttcttct 235  Q
    ||||||  |||| | |||| ||||||| ||||  | |||||||||||||||  ||||| ||||||||||||||||    
T  11393877 tggtatagtgttcttgtcgcccgttatggcgaggttggtgggaggttggagtcggggggccggagttgttcttct 11393951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 235
Target Start/End: Complemental strand, 17659512 - 17659368
Alignment:
Q  91 gttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcgtccgttatcgc 190  Q
    |||||| || |||||||| || ||| |||| || ||||||||||||||| || | |||||    || || |||||||  || ||||||| ||||||| ||    
T  17659512 gttgaaagaatttaatgtggctttgttaggtaagtggtgttggaggatgctagttgataggagtggcttttggtatcgagtcttagtcgcccgttatggc 17659413  T
Q  191 gaaataggtgggaggttggaggtgggggtccggagttgttcttct 235  Q
    ||| ||||||||||||||||||| |||| ||||||||||||||||    
T  17659412 gaagtaggtgggaggttggaggttgggggccggagttgttcttct 17659368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 63 - 235
Target Start/End: Complemental strand, 36157863 - 36157691
Alignment:
Q  63 aaggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgt 161  Q
    |||||||||||||| |||||| | ||  |||||||||||||||||   || ||| |||| || ||||||||||||||| |  | |||||    || ||||    
T  36157863 aaggagtttggaggtttgggggtgagacagttgaaggagtttaatcaggctttgttaggaaagtggtgttggaggatgcttgttgataggagtggtttgt 36157764  T
Q  162 ggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttcttct 235  Q
    |||||   |||||||||| |||| || ||||| ||||||||||||||||||| |||| ||||||||||||||||    
T  36157763 ggtattgagttttagtcgcccgt-atggcgaagtaggtgggaggttggaggttgggggccggagttgttcttct 36157691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 192
Target Start/End: Original strand, 43249234 - 43249364
Alignment:
Q  62 aaaggagtttggagggttggggtcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgt 161  Q
    |||||||| |||||||||||||| |||| |||||  ||||||||| | || ||| |||| ||||||||||||||||| ||  | ||||||| ||| ||||    
T  43249234 aaaggagtctggagggttggggttaggaggttgagagagtttaattttgctttgttaggtaaatggtgttggaggatattggtagatagagtagggttgt 43249333  T
Q  162 ggtatcatgttttagtcgtccgttatcgcga 192  Q
    |||||  |||| |||||| ||| ||| ||||    
T  43249334 ggtatagtgttctagtcgcccgctatggcga 43249364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 63 - 235
Target Start/End: Complemental strand, 24794456 - 24794294
Alignment:
Q  63 aaggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgt 161  Q
    ||||||| ||||||||||||| | ||||  |||| |||||||||| | || ||| |||| ||||||||||||||||||||  | ||||||| ||| ||||    
T  24794456 aaggagtctggagggttgggggttaggagattgagggagtttaattttgctttgttaggtaaatggtgttggaggatgttggtagatagagtaggtttgt 24794357  T
Q  162 ggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttcttct 235  Q
    |||||  |||| | |||| ||||||| ||           ||||||||||||||||| ||||||||||||||||    
T  24794356 ggtatagtgttcttgtcgcccgttatggc-----------gaggttggaggtggggggccggagttgttcttct 24794294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 90 - 164
Target Start/End: Complemental strand, 12341249 - 12341175
Alignment:
Q  90 agttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgtggt 164  Q
    |||||||||| |||||| | || ||| |||| || |||||||||||||||||| ||||||||| ||| |||||||    
T  12341249 agttgaaggaatttaatatggctttgttaggaaagtggtgttggaggatgttagtggatagaggagggttgtggt 12341175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 29721364 - 29721420
Alignment:
Q  86 aggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgtta 142  Q
    ||||| ||||||||||||||| | || ||| |||| |||||||||||||||||||||    
T  29721364 aggaaattgaaggagtttaatcttgcgttgttaggcaaatggtgttggaggatgtta 29721420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 33178535 - 33178474
Alignment:
Q  80 ggggtcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgtt 141  Q
    ||||| |||| ||| |||||||||||  |||| ||||| || ||||||||||||||||||||    
T  33178535 ggggtaaggaggttaaaggagtttaacttagctttgcttggtaaatggtgttggaggatgtt 33178474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 86 - 235
Target Start/End: Complemental strand, 53810527 - 53810378
Alignment:
Q  86 aggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcgtccgtt 185  Q
    ||||| ||||||||||||||| | |  || ||| | ||||||||||||||||||||| | ||||||||||| |||||||| ||||||||||||||| |||    
T  53810527 aggaaattgaaggagtttaatattgttttactatgtaaatggtgttggaggatgttagtcgatagagaaggtttgtggtaccatgttttagtcgtctgtt 53810428  T
Q  186 atcgcgaaataggtgggaggttggaggtgggggtccggagttgttcttct 235  Q
    || ||||| |||||||||||||||||||||||| |||||||  |||||||    
T  53810427 atggcgaagtaggtgggaggttggaggtggggggccggagtgattcttct 53810378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 59 - 218
Target Start/End: Complemental strand, 26694642 - 26694482
Alignment:
Q  59 taaaaaggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaagga 157  Q
    ||||||| ||| |||||| |||||| | ||||  ||||||||||||||| | || || ||||| ||||||||||||||||||||| ||||||||| |||     
T  26694642 taaaaagaagtatggaggtttgggggtgaggagattgaaggagtttaatattgctttactaggtaaatggtgttggaggatgttagtggatagagtaggg 26694543  T
Q  158 ttgtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtggggg 218  Q
    ||| ||||||| |||||||||||||||||| ||||| ||| ||||||||||||||||||||    
T  26694542 ttgcggtatcaggttttagtcgtccgttatggcgaagtagatgggaggttggaggtggggg 26694482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 61 - 235
Target Start/End: Complemental strand, 19115148 - 19114973
Alignment:
Q  61 aaaaggagtttggagggtt-ggggtcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggatt 159  Q
    ||||||||||||||||||| ||||| ||  ||||||||||||||||| | || ||  |||||||||||||||||||| ||||| ||||||| |  |||||    
T  19115148 aaaaggagtttggagggttaggggttagacagttgaaggagtttaatattgctttattagggaaatggtgttggaggttgttagtggataggggtggatt 19115049  T
Q  160 gtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttcttct 235  Q
     ||||||   ||||||||||  |||||| ||||| || |||||||||||||||| |||| || |||||||||||||    
T  19115048 ttggtatagagttttagtcgctcgttatggcgaagtatgtgggaggttggaggttgggggccagagttgttcttct 19114973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 61 - 235
Target Start/End: Complemental strand, 8935786 - 8935611
Alignment:
Q  61 aaaaggagtttggagggtt-ggggtcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggatt 159  Q
    ||||||||||||||||||| ||||| ||  ||||||||||||||||| | || || ||||||||||||||||||||||||||| ||||||| |  || ||    
T  8935786 aaaaggagtttggagggttaggggttagacagttgaaggagtttaatattgccttactagggaaatggtgttggaggatgttagtggataggggtggttt 8935687  T
Q  160 gtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttcttct 235  Q
     ||||||   ||||||||||  |||||| ||||  |  |||||||||||||||  |||| ||||||||||||||||    
T  8935686 ttggtatagagttttagtcgctcgttatggcgaggtgtgtgggaggttggaggatgggggccggagttgttcttct 8935611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 87 - 226
Target Start/End: Complemental strand, 55299297 - 55299158
Alignment:
Q  87 ggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcgtccgtta 186  Q
    |||| ||||||||||||||| |||| ||| |||| |||||||||||| |||||||  |||||||||  || ||||||||||  |||||||||| | | ||    
T  55299297 ggaaattgaaggagtttaatttagctttgttaggaaaatggtgttggcggatgttggtggatagaggtggtttgtggtatcgggttttagtcgccaggta 55299198  T
Q  187 tcgcgaaataggtgggaggttggaggtgggggtccggagt 226  Q
    | ||||| ||||||| ||||||||||| |||| |||||||    
T  55299197 tggcgaattaggtggcaggttggaggttgggggccggagt 55299158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 87 - 226
Target Start/End: Original strand, 23872931 - 23873070
Alignment:
Q  87 ggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcgtccgtta 186  Q
    |||| ||||||||||||||| |||| ||| |||| |||||||||||| |||||||  | |||||||  || ||||||||||  |||||||||| | | ||    
T  23872931 ggaaattgaaggagtttaatttagctttgttaggaaaatggtgttggcggatgttggtagatagaggtggtttgtggtatcgggttttagtcgccaggta 23873030  T
Q  187 tcgcgaaataggtgggaggttggaggtgggggtccggagt 226  Q
    | ||||| ||||||| ||||||||||| |||| |||||||    
T  23873031 tggcgaattaggtggcaggttggaggttgggggccggagt 23873070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 235
Target Start/End: Complemental strand, 23657979 - 23657834
Alignment:
Q  90 agttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcgtccgttatcg 189  Q
    ||||||||||||||||| | || || ||||||||||||||||| ||||||||| ||||||| |  || || ||||||   |||||||||| ||||||| |    
T  23657979 agttgaaggagtttaatattgccttactagggaaatggtgttgaaggatgttagtggataggggtggtttttggtatagagttttagtcgcccgttatag 23657880  T
Q  190 cgaaataggtgggaggttggaggtgggggtccggagttgttcttct 235  Q
    |||  |  |||||||||||||||  |||| ||| ||||||||||||    
T  23657879 cgaggtgtgtgggaggttggaggatgggggccgaagttgttcttct 23657834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 235
Target Start/End: Original strand, 4524139 - 4524229
Alignment:
Q  144 tggatagagaaggattgtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttcttct 235  Q
    |||||||||| |||||||| ||||||||| |||||| |||| || ||||| |||| |||||||||||||| |||| ||||||||||||||||    
T  4524139 tggatagagatggattgtgatatcatgttctagtcgcccgt-atggcgaagtaggcgggaggttggaggttgggggccggagttgttcttct 4524229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 218
Target Start/End: Complemental strand, 20675707 - 20675576
Alignment:
Q  87 ggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcgtccgtta 186  Q
    |||| ||||||||||||||| |||| ||| |||| |||||||||||| |||||||  |||| ||||  || |||||||||   |||||||||| | | ||    
T  20675707 ggaaattgaaggagtttaatttagctttgttaggaaaatggtgttggcggatgttggtggacagaggtggtttgtggtatagggttttagtcgccaggta 20675608  T
Q  187 tcgcgaaataggtgggaggttggaggtggggg 218  Q
    | ||||||||||||| ||||||||||| ||||    
T  20675607 tggcgaaataggtggcaggttggaggttgggg 20675576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 228
Target Start/End: Complemental strand, 34975245 - 34975079
Alignment:
Q  63 aaggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgt 161  Q
    |||||||||||||| |||||| | ||  |||||||||| |||||| |  | ||| | || |||||||||||||||||  || | |||||    || || |    
T  34975245 aaggagtttggaggtttgggggtgagacagttgaaggaatttaatttgactttgttgggaaaatggtgttggaggatactagttgataggagtggctttt 34975146  T
Q  162 ggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttg 228  Q
    ||||||||||||||||||||||||||  |||| |||||||||||||| |||| |||| |||||||||    
T  34975145 ggtatcatgttttagtcgtccgttatgacgaagtaggtgggaggttgaaggttgggggccggagttg 34975079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 19648384 - 19648324
Alignment:
Q  90 agttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatag 150  Q
    ||||||||||||||||||| || || ||||||||||||||||||||||||||| |||||||    
T  19648384 agttgaaggagtttaatgttgccttactagggaaatggtgttggaggatgttagtggatag 19648324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 235
Target Start/End: Original strand, 10562765 - 10562936
Alignment:
Q  65 ggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgtgg 163  Q
    |||||||||||| |||||| | ||  ||||||| || |||||| | || ||| |||| || ||||||||||||||| || | |||||    || || |||    
T  10562765 ggagtttggaggtttgggggtgagacagttgaaagaatttaatttggctttgttaggaaagtggtgttggaggatgctagtagataggagtggcttttgg 10562864  T
Q  164 tatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttcttct 235  Q
    ||||  || ||||||| ||||||| ||||| ||||||||||||||||||| |||| || |||||||||||||    
T  10562865 tatcgagtcttagtcgcccgttatggcgaagtaggtgggaggttggaggttgggggccagagttgttcttct 10562936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 235
Target Start/End: Complemental strand, 42778885 - 42778775
Alignment:
Q  125 tggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccgga 224  Q
    ||||||||||||||| |||| |||||    || || |||||||  || ||||||| ||||||| ||||| |||| |||||||||||||| |||| |||||    
T  42778885 tggtgttggaggatgctaattgataggagtggcttttggtatcgagtcttagtcgcccgttatggcgaagtaggcgggaggttggaggttgggggccgga 42778786  T
Q  225 gttgttcttct 235  Q
    |||||||||||    
T  42778785 gttgttcttct 42778775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 63 - 235
Target Start/End: Original strand, 42952935 - 42953097
Alignment:
Q  63 aaggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgt 161  Q
    ||||||| ||||||||||||| | ||||  |||| |||||||||| | || ||| |||| ||||||||||||||||||||  | ||||||| ||| ||||    
T  42952935 aaggagtctggagggttgggggttaggagattgagggagtttaattttgctttgttaggtaaatggtgttggaggatgttggtagatagagtaggtttgt 42953034  T
Q  162 ggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttcttct 235  Q
    |||||  |||| | |||| ||||||| ||           ||||||||||||||||| ||||||||||||||||    
T  42953035 ggtatagtgttcttgtcgcccgttatggc-----------gaggttggaggtggggggccggagttgttcttct 42953097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 141
Target Start/End: Complemental strand, 2632111 - 2632029
Alignment:
Q  60 aaaaaggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgtt 141  Q
    ||||||||||||||||| |||||| |  |||| ||||||||||||||| |||  ||| ||||||||||||||||| |||||||    
T  2632111 aaaaaggagtttggaggtttgggggtgcggaaattgaaggagtttaatttagttttgttagggaaatggtgttggcggatgtt 2632029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 235
Target Start/End: Complemental strand, 20396229 - 20396119
Alignment:
Q  125 tggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccgga 224  Q
    ||||||||||||||| || | |||||    ||||| |||||||  || | ||||| ||||||| ||||| | ||||||||||||||| | |||| |||||    
T  20396229 tggtgttggaggatgctagttgataggagtggattttggtatcgagtctcagtcgcccgttatggcgaagtgggtgggaggttggagtttgggggccgga 20396130  T
Q  225 gttgttcttct 235  Q
    |||||||||||    
T  20396129 gttgttcttct 20396119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 65 - 166
Target Start/End: Original strand, 55725138 - 55725240
Alignment:
Q  65 ggagtttggagggttggg-gtcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgtgg 163  Q
    ||||| |||||||||||| || |||| |||||  ||||||||  | || ||| |||||||||||||||||||| ||||| | |||||||| ||||| |||    
T  55725138 ggagtatggagggttgggtgttaggaggttgagagagtttaactttgctttgttagggaaatggtgttggaggttgttagtagatagagatggattatgg 55725237  T
Q  164 tat 166  Q
    |||    
T  55725238 tat 55725240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 209
Target Start/End: Original strand, 3129453 - 3129566
Alignment:
Q  96 aggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcgtccgttatcgcgaaat 195  Q
    |||||||||||   || ||| ||||||||||||||||| |||||||  |||||||||  || |||||||||   |||||||| ||| | ||| ||||| |    
T  3129453 aggagtttaataatgctttgttagggaaatggtgttggcggatgttggtggatagaggtggtttgtggtatagggttttagttgtcaggtatggcgaatt 3129552  T
Q  196 aggtgggaggttgg 209  Q
    |||||| |||||||    
T  3129553 aggtggcaggttgg 3129566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 209
Target Start/End: Original strand, 53486436 - 53486520
Alignment:
Q  125 tggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttgg 209  Q
    ||||||||||||||| || | |||||  | || || |||||||  |||||||||| ||||||| ||||| |||||||||||||||    
T  53486436 tggtgttggaggatgctagttgataggaatggtttttggtatcgagttttagtcgcccgttatggcgaagtaggtgggaggttgg 53486520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 235
Target Start/End: Original strand, 13158324 - 13158388
Alignment:
Q  170 gttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttcttct 235  Q
    |||||||||  ||||||| |||||  ||||||||||||||||||||||| |  |||||||||||||    
T  13158324 gttttagtcacccgttatggcgaagcaggtgggaggttggaggtggggg-ctagagttgttcttct 13158388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 235
Target Start/End: Original strand, 49925833 - 49925870
Alignment:
Q  198 gtgggaggttggaggtgggggtccggagttgttcttct 235  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  49925833 gtgggaggttggaggttgggggccggagttgttcttct 49925870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 63 - 235
Target Start/End: Original strand, 25504424 - 25504597
Alignment:
Q  63 aaggagtttggagggtt-ggggtcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgt 161  Q
    ||||||||||||||||| ||||| ||  |||||| |||||||||| | || || ||||||||||||||||||||||||||| ||||||| |  || || |    
T  25504424 aaggagtttggagggttaggggttagacagttgatggagtttaatattgccttactagggaaatggtgttggaggatgttagtggataggggtggttttt 25504523  T
Q  162 ggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttcttct 235  Q
    |||||   |||||||||| ||||||| ||||  |  |||||||||||||||| |||| || |||||||||||||    
T  25504524 ggtatagagttttagtcgcccgttatggcgaggtgtgtgggaggttggaggttgggggccagagttgttcttct 25504597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 62 - 233
Target Start/End: Complemental strand, 39430988 - 39430816
Alignment:
Q  62 aaaggagtttggagggtt-ggggtcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattg 160  Q
    |||||||| ||||||||| ||||| |||| ||||| ||||||||||   || ||| |||| || |||||||||||||||||  | ||||||| ||| |||    
T  39430988 aaaggagtctggagggttaggggttaggaggttgagggagtttaattgtgctttgttaggtaagtggtgttggaggatgttggtagatagagtagggttg 39430889  T
Q  161 tggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttctt 233  Q
    ||||||  |||| |||||| ||||||| ||||  | ||||||||||||||||| |||| ||||||||||||||    
T  39430888 tggtatagtgttctagtcgcccgttatggcgaggttggtgggaggttggaggttgggggccggagttgttctt 39430816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 87 - 226
Target Start/End: Original strand, 48072886 - 48073025
Alignment:
Q  87 ggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcgtccgtta 186  Q
    |||| ||||||||||||||| |||| ||| |||| |||||||||||| |||||||  |||||||||  || ||||||||||  |||||||||| | | ||    
T  48072886 ggaaattgaaggagtttaatttagctttgttaggaaaatggtgttggcggatgttggtggatagaggtggtttgtggtatcgggttttagtcgacaggta 48072985  T
Q  187 tcgcgaaataggtgggaggttggaggtgggggtccggagt 226  Q
    | ||||| ||||||| ||||||||||| |||| |||||||    
T  48072986 tggcgaattaggtggcaggttggaggttgggggccggagt 48073025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 60 - 226
Target Start/End: Original strand, 32352737 - 32352904
Alignment:
Q  60 aaaaaggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggat 158  Q
    |||||||||| ||| || |||||| | ||||| ||||||||||||||| |||| ||| |||| |||||||||||| |||||||  |||||||||  || |    
T  32352737 aaaaaggagtatggcggtttgggggtgaggaaattgaaggagtttaatttagctttgttaggaaaatggtgttggcggatgttggtggatagaggtggtt 32352836  T
Q  159 tgtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagt 226  Q
    ||||||||   ||||||||||   | ||| ||||| ||||||| ||||||||||| |||| |||||||    
T  32352837 tgtggtatagggttttagtcgctaggtatggcgaattaggtggcaggttggaggttgggggccggagt 32352904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 81 - 206
Target Start/End: Original strand, 34853097 - 34853222
Alignment:
Q  81 gggtcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcgt 180  Q
    |||| |||||| |||| ||||||||||| |  || ||||| |||   ||||||||||||||| | ||||||||||| ||||||||||||||||||||||     
T  34853097 gggtaaggaagctgaaagagtttaatgttgatttactaggtaaacattgttggaggatgttagttgatagagaaggtttgtggtatcatgttttagtcgc 34853196  T
Q  181 ccgttatcgcgaaataggtgggaggt 206  Q
    ||  ||| ||||| ||||||||||||    
T  34853197 ccaatatggcgaagtaggtgggaggt 34853222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 62 - 233
Target Start/End: Original strand, 49264393 - 49264565
Alignment:
Q  62 aaaggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattg 160  Q
    |||||||| ||||||||||||| | |||| ||||| |||||||||  | |  ||| |||| ||||||||||||| ||||||  | ||||||| ||| |||    
T  49264393 aaaggagtctggagggttgggggttaggaggttgagggagtttaactttgttttgttaggtaaatggtgttggaagatgttggtagatagagtagggttg 49264492  T
Q  161 tggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttctt 233  Q
    |||| |  |||| |||||| ||||||| ||||  | || |||||||||||||| |||| ||||||||||||||    
T  49264493 tggtgtagtgttatagtcgcccgttatggcgaggttggagggaggttggaggttgggggccggagttgttctt 49264565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 62 - 192
Target Start/End: Complemental strand, 20796368 - 20796237
Alignment:
Q  62 aaaggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattg 160  Q
    |||||||| |||||| |||||| | |||| ||||| |||||||||| | || ||| |||| ||||||||||||||||||||  |  |||||| ||| |||    
T  20796368 aaaggagtctggaggattgggggttaggaggttgagggagtttaattttgctttgttaggtaaatggtgttggaggatgttggtaaatagagtagggttg 20796269  T
Q  161 tggtatcatgttttagtcgtccgttatcgcga 192  Q
    |||||| ||||| |||||| ||||||| ||||    
T  20796268 tggtataatgttctagtcgcccgttatggcga 20796237  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 28097492 - 28097568
Alignment:
Q  158 ttgtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttcttct 235  Q
    ||||||||||  |||||||||| ||||||| ||||| ||||||||||||||||||| |||| |||||||| |||||||    
T  28097492 ttgtggtatcgagttttagtcgcccgttatggcgaagtaggtgggaggttggaggttgggg-ccggagttattcttct 28097568  T

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Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 26721232 - 26721174
Alignment:
Q  173 ttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttc 231  Q
    ||||||||||||||| ||||| |||||||||||||||||||  ||| ||||||||||||    
T  26721232 ttagtcgtccgttatggcgaagtaggtgggaggttggaggttaggggccggagttgttc 26721174  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 30110466 - 30110527
Alignment:
Q  173 ttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttcttct 235  Q
    ||||||| ||||||| ||||| ||||||||||||||||||| |||| | ||||||||||||||    
T  30110466 ttagtcgcccgttatggcgaagtaggtgggaggttggaggttgggg-ctggagttgttcttct 30110527  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 156
Target Start/End: Complemental strand, 20987865 - 20987771
Alignment:
Q  63 aaggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaagg 156  Q
    ||||||||||| ||| ||||| | ||| |||||| ||| ||||||   || ||| ||||||||||||| |||||||||||  |||||||||||||    
T  20987865 aaggagtttggtgggctgggggttaggcagttgagggaatttaatactgcgttgttagggaaatggtgctggaggatgttggtggatagagaagg 20987771  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 166
Target Start/End: Original strand, 40562986 - 40563092
Alignment:
Q  61 aaaaggagtttggagggtt-ggggtcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggatt 159  Q
    ||||||||  ||||||||| ||||| ||| |||||||||| || ||| | || ||| |||| || | |||||||||||||||  |||||||||| || ||    
T  40562986 aaaaggaggatggagggttaggggtgaggtagttgaaggaattcaatattgccttgttaggcaagttgtgttggaggatgttggtggatagagacgggtt 40563085  T
Q  160 gtggtat 166  Q
    |||||||    
T  40563086 gtggtat 40563092  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 33142698 - 33142747
Alignment:
Q  117 tagggaaatggtgttggaggatgttaatggatagagaaggattgtggtat 166  Q
    |||| ||||||||||||||| ||||| | ||||||||||| |||||||||    
T  33142698 taggtaaatggtgttggaggttgttagttgatagagaaggcttgtggtat 33142747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 10710738 - 10710778
Alignment:
Q  173 ttagtcgtccgttatcgcgaaataggtgggaggttggaggt 213  Q
    ||||||| ||||||| ||||| |||||||||||||||||||    
T  10710738 ttagtcgcccgttatggcgaagtaggtgggaggttggaggt 10710778  T

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Target: scaffold0002 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 226
Target Start/End: Original strand, 327564 - 327729
Alignment:
Q  62 aaaggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattg 160  Q
    |||||||| |||||| |||||| | ||  |||||||||||||||||   || ||| ||||||||||||||||| |||||||  |||||||||| || |||    
T  327564 aaaggagtatggaggtttgggggtgagacagttgaaggagtttaatagtgctttgttagggaaatggtgttggcggatgttggtggatagagatggtttg 327663  T
Q  161 tggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagt 226  Q
    ||||||   |||||||| | | | ||| ||||| ||||||| ||||||||||| |||| |||||||    
T  327664 tggtatagggttttagttgccaggtatggcgaattaggtggcaggttggaggttgggggccggagt 327729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 90 - 226
Target Start/End: Original strand, 312139 - 312275
Alignment:
Q  90 agttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcgtccgttatcg 189  Q
    |||||||||||||||||   || ||| ||||||||||||||||| |||||||  |||||||||| || |||||||||   |||||||| | | | ||| |    
T  312139 agttgaaggagtttaatagtgctttgttagggaaatggtgttggcggatgttggtggatagagatggtttgtggtatagggttttagttgccaggtatgg 312238  T
Q  190 cgaaataggtgggaggttggaggtgggggtccggagt 226  Q
    |||| ||||||| ||||||||||| |||| |||||||    
T  312239 cgaattaggtggcaggttggaggttgggggccggagt 312275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 90 - 226
Target Start/End: Original strand, 134312 - 134448
Alignment:
Q  90 agttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcgtccgttatcg 189  Q
    |||||||||||||||||   || ||| ||||||||||||||||| |||||||  |||||||||| || |||||||||   |||||||| | | | ||| |    
T  134312 agttgaaggagtttaatagtgctttgttagggaaatggtgttggcggatgttggtggatagagatggtttgtggtatagggttttagttgccaggtatgg 134411  T
Q  190 cgaaataggtgggaggttggaggtgggggtccggagt 226  Q
    |||| ||||||| ||||||||||| |||| |||||||    
T  134412 cgaattaggtggcaggttggaggttgggggccggagt 134448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 147
Target Start/End: Original strand, 63737 - 63814
Alignment:
Q  71 tggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatgga 147  Q
    ||||||||||||| | ||| |||||| |||||||||| |||| ||||||||||||||||||||| ||||||| |||||    
T  63737 tggagggttgggggttaggcagttgagggagtttaatttagctttgctagggaaatggtgttggcggatgttgatgga 63814  T

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Target: scaffold0912 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0912
Description:

Target: scaffold0912; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 2414 - 2476
Alignment:
Q  173 ttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttcttct 235  Q
    ||||||| ||||||| ||||| | ||||||||||||||||| |||| ||||||||||||||||    
T  2414 ttagtcgcccgttatggcgaagtgggtgggaggttggaggttgggggccggagttgttcttct 2476  T

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Target: scaffold0131 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 209
Target Start/End: Original strand, 3983 - 4133
Alignment:
Q  60 aaaaaggagtttggagggttgggg-tcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggat 158  Q
    |||||||||| |||||| |||||| | ||  |||||||||||||||||   ||  || ||||||||||||||||| |||||||  |||||||||| || |    
T  3983 aaaaaggagtatggaggtttgggggtgagacagttgaaggagtttaatagtgctctgttagggaaatggtgttggcggatgttggtggatagagatggtt 4082  T
Q  159 tgtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttgg 209  Q
    ||||||||   |||||||| | | | ||| ||||| ||||||| |||||||    
T  4083 tgtggtatagggttttagttgccaggtatggcgaattaggtggcaggttgg 4133  T

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Target: scaffold0112 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 235
Target Start/End: Original strand, 15165 - 15253
Alignment:
Q  146 gatagagaaggattgtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttcttct 235  Q
    ||||||||||| |||||||| ||||||||||||  ||||| | ||||| |||||||||||  ||||||||||| |||||||  |||||||    
T  15165 gatagagaaggtttgtggtaccatgttttagtctcccgtt-tggcgaagtaggtgggaggaaggaggtggggggccggagtgtttcttct 15253  T

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Target: scaffold1350 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1350
Description:

Target: scaffold1350; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 163
Target Start/End: Complemental strand, 252 - 153
Alignment:
Q  65 ggagtttggagggttggg-gtcaggaagttgaaggagtttaatgtagcattgctagggaaatggtgttggaggatgttaatggatagagaaggattgtgg 163  Q
    ||||| |||||||||||| || |||| |||||  ||||||||  | || ||| |||||||||||||||||||| ||||| | |||||||| |||||||||    
T  252 ggagtatggagggttgggtgttaggaggttgagagagtttaacattgctttgttagggaaatggtgttggaggttgttagtagatagagatggattgtgg 153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 8131 - 8073
Alignment:
Q  173 ttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttc 231  Q
    ||||||| |||||||  |||| ||||||||||||||||||| |||| ||||||||||||    
T  8131 ttagtcgcccgttatgacgaagtaggtgggaggttggaggttgggggccggagttgttc 8073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 13065 - 13007
Alignment:
Q  173 ttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccggagttgttc 231  Q
    ||||||| |||||||  |||| ||||||||||||||||||| |||| ||||||||||||    
T  13065 ttagtcgcccgttatgacgaagtaggtgggaggttggaggttgggggccggagttgttc 13007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 235
Target Start/End: Complemental strand, 182762 - 182652
Alignment:
Q  125 tggtgttggaggatgttaatggatagagaaggattgtggtatcatgttttagtcgtccgttatcgcgaaataggtgggaggttggaggtgggggtccgga 224  Q
    ||||||||||||||| || | |||||    ||||| |||||||  || | ||||| ||||||| ||||| | ||||||||||||||| | |||| |||||    
T  182762 tggtgttggaggatgctagttgataggagtggattttggtatcgagtctcagtcgcccgttatggcgaagtgggtgggaggttggagtttgggggccgga 182663  T
Q  225 gttgttcttct 235  Q
    |||||||||||    
T  182662 gttgttcttct 182652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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