View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13222_high_25 (Length: 228)
Name: NF13222_high_25
Description: NF13222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13222_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 79 - 227
Target Start/End: Original strand, 34127037 - 34127185
Alignment:
| Q |
79 |
tatttcatcatcttccttgatcagcttcatcaacaaactcagaagaataaaaatcaacaaacccaataatccaatttaaacatcattattcaatttttcc |
178 |
Q |
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| T |
34127037 |
tatttcatcatcttccttcatcaccttcatcaacaaattcagaagaataaaaatcaacaaacccaataatccaatttaaacatcattattcaatttttcc |
34127136 |
T |
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| Q |
179 |
ccaaattcatacccataacctcaaattctctatatattcttcgacatcc |
227 |
Q |
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| T |
34127137 |
ccaaattcatacccataacctcaaattctctatattttctacaacatcc |
34127185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 127 - 205
Target Start/End: Complemental strand, 14160239 - 14160162
Alignment:
| Q |
127 |
aaaaatcaacaaacccaataatccaatttaaacatcattattcaatttttccccaaattcatacccataacctcaaatt |
205 |
Q |
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| T |
14160239 |
aaaactcaagaaacccaataatctaatttaaacatcaatattcaa-ttttccccaaattcaaacccctgacctcaaatt |
14160162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 34126959 - 34126988
Alignment:
| Q |
1 |
tatgttttggtctcttaagttatactagcc |
30 |
Q |
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| T |
34126959 |
tatgttttggtctcttaagttatactagcc |
34126988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 132 - 205
Target Start/End: Original strand, 17689974 - 17690046
Alignment:
| Q |
132 |
tcaacaaacccaataatccaatttaaacatcattattcaatttttccccaaattcatacccataacctcaaatt |
205 |
Q |
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| T |
17689974 |
tcaagaaacccaataatctaatttaaaaatcaatattcaattttt-cccaaattcaaacccctaacctcaaatt |
17690046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 205
Target Start/End: Original strand, 9449941 - 9450045
Alignment:
| Q |
104 |
ttcatcaacaaactcagaagaataaaaa----tcaacaaacccaataatccaatttaaacatcattattcaatttttccccaaattcatacccataacct |
199 |
Q |
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| T |
9449941 |
ttcatcaacaaacccagaaaaattaaaaaaactcaagaaacccaatgatctaatttaaacatcaacattcaa-ttttccccaaattcaaacccctcacct |
9450039 |
T |
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| Q |
200 |
caaatt |
205 |
Q |
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|||||| |
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| T |
9450040 |
caaatt |
9450045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 21325526 - 21325467
Alignment:
| Q |
127 |
aaaaatcaacaaacccaataatccaatttaaacatcattattcaatttttccccaaattc |
186 |
Q |
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|||| |||||||| ||||||||||||||||||||||| | ||||||||| ||||||||| |
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| T |
21325526 |
aaaactcaacaaaaccaataatccaatttaaacatcaattttcaattttctcccaaattc |
21325467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 186
Target Start/End: Original strand, 8594303 - 8594362
Alignment:
| Q |
127 |
aaaaatcaacaaacccaataatccaatttaaacatcattattcaatttttccccaaattc |
186 |
Q |
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|||| |||||||| ||||||||||||||||||||||| |||||| |||| ||||||||| |
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| T |
8594303 |
aaaactcaacaaatccaataatccaatttaaacatcaatattcatttttctcccaaattc |
8594362 |
T |
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