View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13222_high_26 (Length: 227)

Name: NF13222_high_26
Description: NF13222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13222_high_26
NF13222_high_26
[»] chr7 (2 HSPs)
chr7 (52-227)||(6489202-6489377)
chr7 (1-31)||(6489151-6489181)


Alignment Details
Target: chr7 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 52 - 227
Target Start/End: Original strand, 6489202 - 6489377
Alignment:
Q  52 ggttcggtttcttcattgtcacagaagagagatgcaatctgctttaatggatccaaattcaattgagaataaccgttttgatggtgctgagttccgcatt 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6489202 ggttcggtttcttcattgtcacagaagagagatgcaatctgctttaatggatccaaattcaattgagaataaccgttttgatggtgctgagttccgcatt 6489301  T
Q  152 cgtgactgcaaccgcaatttaatacagcattcattgacgacgttgttgctgctgccgtgatgtatctggtgtccgt 227  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  6489302 cgtgactgcaaccgcaatttaatacagcattgattgatgacgttgttgctgctgccgtgatgtatctggtgtccgt 6489377  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 6489151 - 6489181
Alignment:
Q  1 tatttcatctctctatttcaaaatgtaactg 31  Q
    |||||||||||||||||||||||||||||||    
T  6489151 tatttcatctctctatttcaaaatgtaactg 6489181  T

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