View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13222_low_10 (Length: 358)
Name: NF13222_low_10
Description: NF13222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13222_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 42191993 - 42191646
Alignment:
| Q |
1 |
cagccactatgtgtggacacaaccaccatacagttatgtctcatatttgatcaaaatctgattttacattagtttttgtagttcaatggaactttaaagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
42191993 |
cagccactatgtgtggacacaaccaccatacagttatgtctcatatttgatcaaaatctgatgttacattagtttttgtagttcaatagaactttaaagc |
42191894 |
T |
|
| Q |
101 |
ccattttgttacaattgtgtttttcctaagagacttgctaaatttaccactttcaagctcttgatatgactttcaccacatatttattagattgatgtct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42191893 |
ccattttgttacaattgtgtttttcctaagagactagctaaatttaccactttcaagctcttgatatgactttcaccacatatttattagattgatgtct |
42191794 |
T |
|
| Q |
201 |
gactgcactgatttaacgtatcagtaagannnnnnnnaatgtgctgtgagttttcacttattgtctggaagttatttgtagagttttcttttgcatgttg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
42191793 |
gactgcactgatttaacgtatcagtaagattttttttaatgtgctgtgagttttcacttattgtcgggaagttatttgtagagttttcttttgcatgttg |
42191694 |
T |
|
| Q |
301 |
aaaattggagaaattttatttcagtattgatatttctggtgatctctg |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42191693 |
aaaattggagaaattttatttcagtattgatatttctggtgatctctg |
42191646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 44 - 348
Target Start/End: Complemental strand, 42191259 - 42190956
Alignment:
| Q |
44 |
tatttgatcaaaatctgattttacattagtttttgtagttcaatggaactttaaagcccattttgttacaattgtgtttttcctaagagacttgctaaat |
143 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
42191259 |
tatttgatcaaaatctgatgttacattagtttttgtagttcaatggaactttaaagcccattttgttacaattatgtttttcctaagagactagctaaat |
42191160 |
T |
|
| Q |
144 |
ttaccactttcaagctcttgatatgactttcaccacatatttattagattgatgtctgactgcactgatttaacgtatcagtaagannnnnnnnaatgtg |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
42191159 |
ttaccactttcaagctcttgatatgactttcaccacatatttattagattgatgtctgactgcactgatttaacgtatcagtaaga-tttttttaatgtg |
42191061 |
T |
|
| Q |
244 |
ctgtgagttttcacttattgtctggaagttatttgtagagttttcttttgcatgttgaaaattggagaaattttatttcagtattgatatttctggtgat |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42191060 |
ctgtgagttttcacttattgtctggaagttatttgtagagttttcttttgcatgttgaaaattggagaaattttatttcagtattgatatttctggtgat |
42190961 |
T |
|
| Q |
344 |
ctctg |
348 |
Q |
| |
|
||||| |
|
|
| T |
42190960 |
ctctg |
42190956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 167 - 348
Target Start/End: Complemental strand, 1256347 - 1256166
Alignment:
| Q |
167 |
tgactttcaccacatatttattagattgatgtctgactgcactgatttaacgtatcagtaagannnnnnnnaatgtgctgtgagttttcacttattgtct |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
1256347 |
tgactttcaccacatatttattagattgatgtctgactgcactgatttaacgtatcagtaatattttttttaatgtgctgtgagttttcacttattgtct |
1256248 |
T |
|
| Q |
267 |
ggaagttatttgtagagttttcttttgcatgttgaaaattggagaaattttatttcagtattgatatttctggtgatctctg |
348 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1256247 |
ggaagttatttgtagacttttcttttgcatgttgaaaattggagaaattttatttcagtattgatatttctggtgatctctg |
1256166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University