View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13222_low_12 (Length: 295)
Name: NF13222_low_12
Description: NF13222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13222_low_12 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 19 - 295
Target Start/End: Original strand, 28521122 - 28521398
Alignment:
| Q |
19 |
atacatgcatgcactaagcgcttaattaaactgaatttcttgttcaaccaaggtcaccatcagcagtgatatacaagagccatgaagaaaaagtgctagc |
118 |
Q |
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| T |
28521122 |
atacatgcatgcactaagcgcttaattaaactgaatttcttgttcaaccaaggtcaccatcagcagtgatatacaagagccatgaagaaaaagtgctagc |
28521221 |
T |
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| Q |
119 |
tccatttactgctacattctcatctagaggaccaaatccaggatccaaacatcttctcaaggtattactattgatggtatttttccataaagaatgtatt |
218 |
Q |
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| T |
28521222 |
tccatttactgctacattctcatctagaggaccaaatccaggatccaaacatcttctcaaggtattactattgatggtatttttccataaagaatgtatt |
28521321 |
T |
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| Q |
219 |
taatgaactgaaggtgttttaaaatgtatatgatgcagcctgacattgcagctccaggcattgacatcttggcatct |
295 |
Q |
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| T |
28521322 |
taatgaactgaaggtgttttataatgtatatgatgcagcctgacattgcagctccaggcattgacatcttggcatct |
28521398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 182
Target Start/End: Original strand, 34293326 - 34293457
Alignment:
| Q |
52 |
aatttcttg-ttcaaccaaggtcaccatcagcagtgatatacaagagccatgaagaaaaagtgctagctccatttactgctacattctcatctagaggac |
150 |
Q |
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| T |
34293326 |
aatttcttggttcaacaaagatcaccatcagcagtgatacataagagccatgaagtgaaaataccagctccatttgttgcttctttttcatctaggggtc |
34293425 |
T |
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| Q |
151 |
caaatccaggatccaaacatcttctcaaggta |
182 |
Q |
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| T |
34293426 |
caaattcaggatctcaacatgttctcaaggta |
34293457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 185
Target Start/End: Complemental strand, 12726896 - 12726763
Alignment:
| Q |
52 |
aatttcttgttcaaccaaggtcaccatcagcagtgatatacaagagccatgaagaaaaagtgctagctccatttactgctacattctcatctagaggacc |
151 |
Q |
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| T |
12726896 |
aatttcttgttcaacatagatcaccctcagcagtgatacataagagccaggaagtgaaaataccagctccatttgttgcttctttttcatctaggggtcc |
12726797 |
T |
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| Q |
152 |
aaatccaggatccaaacatcttctcaaggtatta |
185 |
Q |
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| T |
12726796 |
aaatccaggatctcagcgtattctcaaggtatta |
12726763 |
T |
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