View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13222_low_14 (Length: 291)
Name: NF13222_low_14
Description: NF13222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13222_low_14 |
 | |
|
| [»] chr5 (7 HSPs) |
| |
|
| [»] chr7 (2 HSPs) |
| |
|
| [»] chr6 (4 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 42192032 - 42192321
Alignment:
| Q |
1 |
ctaaaatattgttaaagtcatataaatataagctttcctcttnnnnnnntgcatcaattttgttatgtttaactattgtatcacttgtaaaaaacacaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
42192032 |
ctaaaatattgttaaagtcatataaatataagctttcctcttaaaaaaatgcatcaattttgttatgtttaaccattgtatcactcgtaaaaaacacaca |
42192131 |
T |
|
| Q |
101 |
aatcaaatactaataacataaagcagcaagaaattcaacnnnnnnnngaaactcatttgcatattgccttccaaattgacacctattcaacaccattgac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42192132 |
aatcaaatactaataacataaagcagcaagaaattcaacaaaaaaa-gaaactcatttgcatattgccttccaaattgacacctattcaacaccattgac |
42192230 |
T |
|
| Q |
201 |
actcttgccaacatgtccaatacaaagtcttagaaaattgctaattgaaataataaaattttgagacaatgacataattcaatgcaatcac |
291 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
42192231 |
actcttgccaacatatccaatacaaagtcttactaaattgctaattgaaataataaaattttgagacaatgacataattcaatgtaatcac |
42192321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 148 - 245
Target Start/End: Original strand, 5571238 - 5571335
Alignment:
| Q |
148 |
gaaactcatttgcatattgccttccaaattgacacctattcaacaccattgacactcttgccaacatgtccaatacaaagtcttagaaaattgctaat |
245 |
Q |
| |
|
|||||||| ||||||||||||| ||| |||||||||||||||||||||||| | |||||||||||| | ||||||||||||||| ||||||||||| |
|
|
| T |
5571238 |
gaaactcaattgcatattgcctcacaacttgacacctattcaacaccattgagattcttgccaacatcttcaatacaaagtcttactaaattgctaat |
5571335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 148 - 245
Target Start/End: Complemental strand, 4652172 - 4652075
Alignment:
| Q |
148 |
gaaactcatttgcatattgccttccaaattgacacctattcaacaccattgacactcttgccaacatgtccaatacaaagtcttagaaaattgctaat |
245 |
Q |
| |
|
|||| ||| ||||||||| ||| ||| |||||||||||||||||||||||| | |||||||||||| | ||||| |||||||| ||||||||||| |
|
|
| T |
4652172 |
gaaattcaattgcatattacctcacaacttgacacctattcaacaccattgagattcttgccaacatattcaataaaaagtcttgctaaattgctaat |
4652075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 139
Target Start/End: Complemental strand, 4652261 - 4652219
Alignment:
| Q |
97 |
cacaaatcaaatactaataacataaagcagcaagaaattcaac |
139 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4652261 |
cacaaatcaattactaataacataaagcagcaagaaattcaac |
4652219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 139
Target Start/End: Complemental strand, 4652389 - 4652347
Alignment:
| Q |
97 |
cacaaatcaaatactaataacataaagcagcaagaaattcaac |
139 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4652389 |
cacaaatcaattactaataacataaagcagcaagaaattcaac |
4652347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 139
Target Start/End: Original strand, 5571104 - 5571193
Alignment:
| Q |
50 |
tgcatcaattttgttatgtttaactattgtatcacttgtaaaaaacacacaaatcaaatactaataacataaagcagcaagaaattcaac |
139 |
Q |
| |
|
|||||||||||| ||||||||||||||| | || |||||| ||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
5571104 |
tgcatcaattttcttatgtttaactattccgttgctcttaaaaagtgcacaaatcagttactaataacataaagcagcgagaaattcaac |
5571193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 291
Target Start/End: Complemental strand, 30080553 - 30080515
Alignment:
| Q |
253 |
ataaaattttgagacaatgacataattcaatgcaatcac |
291 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
30080553 |
ataaaattttgagaaaatgacataattcaatgtaatcac |
30080515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 125
Target Start/End: Original strand, 17139184 - 17139252
Alignment:
| Q |
57 |
attttgttatgtttaactattgtatcacttgtaaaaaacacacaaatcaaatactaataacataaagca |
125 |
Q |
| |
|
||||| ||||||||||| ||| || |||| ||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
17139184 |
attttcttatgtttaaccattataccactcctaaaaaatgcacaaatcaaatactaataacattaagca |
17139252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 291
Target Start/End: Complemental strand, 2144591 - 2144553
Alignment:
| Q |
253 |
ataaaattttgagacaatgacataattcaatgcaatcac |
291 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
2144591 |
ataaaattttgagaaaatgacataattcaatgtaatcac |
2144553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 291
Target Start/End: Complemental strand, 5937473 - 5937435
Alignment:
| Q |
253 |
ataaaattttgagacaatgacataattcaatgcaatcac |
291 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
5937473 |
ataaaattttgagaaaatgacataattcaatgtaatcac |
5937435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 291
Target Start/End: Complemental strand, 3449927 - 3449889
Alignment:
| Q |
253 |
ataaaattttgagacaatgacataattcaatgcaatcac |
291 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
3449927 |
ataaaattttaagccaatgacataattcaatgcaatcac |
3449889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 291
Target Start/End: Complemental strand, 6751934 - 6751896
Alignment:
| Q |
253 |
ataaaattttgagacaatgacataattcaatgcaatcac |
291 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
6751934 |
ataaaattttgagaaaatgacataattcaatgtaatcac |
6751896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 291
Target Start/End: Original strand, 10031577 - 10031615
Alignment:
| Q |
253 |
ataaaattttgagacaatgacataattcaatgcaatcac |
291 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
10031577 |
ataaaattttgagaaaatgacataattcaatgtaatcac |
10031615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 291
Target Start/End: Original strand, 19369824 - 19369862
Alignment:
| Q |
253 |
ataaaattttgagacaatgacataattcaatgcaatcac |
291 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
19369824 |
ataaaattttgagaaaatgacataattcaatgtaatcac |
19369862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 291
Target Start/End: Original strand, 13307884 - 13307922
Alignment:
| Q |
253 |
ataaaattttgagacaatgacataattcaatgcaatcac |
291 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
13307884 |
ataaaattttgagaaaatgacataattcaatgtaatcac |
13307922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 291
Target Start/End: Complemental strand, 43586057 - 43586019
Alignment:
| Q |
253 |
ataaaattttgagacaatgacataattcaatgcaatcac |
291 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
43586057 |
ataaaattttgagaaaatgacataattcaatgtaatcac |
43586019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University