View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13222_low_15 (Length: 280)
Name: NF13222_low_15
Description: NF13222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13222_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 89; Significance: 6e-43; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 135 - 259
Target Start/End: Original strand, 54746460 - 54746584
Alignment:
| Q |
135 |
ataagtttggttacagaatatggactatgacaagcactgcatggctacaattctggaacaatcatcatattcagatcgaaatggattgtatgcaggttgt |
234 |
Q |
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| T |
54746460 |
ataagtttggttacggaatacggactatggcaagcactgcgttgctacaattgttgaacaatcatcatattcagatcaaaatggattgtatacaggttgt |
54746559 |
T |
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| Q |
235 |
ggaagctgtctacaataacaatcat |
259 |
Q |
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| T |
54746560 |
ggaagctgtctacaataacaatcat |
54746584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 135 - 259
Target Start/End: Original strand, 54763187 - 54763311
Alignment:
| Q |
135 |
ataagtttggttacagaatatggactatgacaagcactgcatggctacaattctggaacaatcatcatattcagatcgaaatggattgtatgcaggttgt |
234 |
Q |
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| T |
54763187 |
ataagtttggttacggaatacggactatggcaagcactgcgttgctacaattgttgaacaatcatcatattcagatcaaaatggattgtatacaggttgt |
54763286 |
T |
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| Q |
235 |
ggaagctgtctacaataacaatcat |
259 |
Q |
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| T |
54763287 |
ggaagctgtctacaataacaatcat |
54763311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 135 - 259
Target Start/End: Original strand, 54770641 - 54770765
Alignment:
| Q |
135 |
ataagtttggttacagaatatggactatgacaagcactgcatggctacaattctggaacaatcatcatattcagatcgaaatggattgtatgcaggttgt |
234 |
Q |
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|||||||||||||| ||||| |||||||| |||||||||| | ||||||||| | |||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
54770641 |
ataagtttggttacggaatacggactatggcaagcactgcgttgctacaattgttgaacaatcatcatattcagatcaaaatggattgtatacaggttgt |
54770740 |
T |
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| Q |
235 |
ggaagctgtctacaataacaatcat |
259 |
Q |
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| T |
54770741 |
ggaagctgtctacaataacaatcat |
54770765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 153 - 239
Target Start/End: Original strand, 52096428 - 52096515
Alignment:
| Q |
153 |
tatggactatgacaagcactgca-tggctacaattctggaacaatcatcatattcagatcgaaatggattgtatgcaggttgtggaag |
239 |
Q |
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||||||||||| || |||||||| |||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52096428 |
tatggactatggcatgcactgcagtggctataattattgaacaatcatcatattcagatcgaaatggattgtatgcaggttgtggaag |
52096515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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