View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13222_low_17 (Length: 254)
Name: NF13222_low_17
Description: NF13222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13222_low_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 40016800 - 40017042
Alignment:
| Q |
1 |
tgcagctcgatgtggcgttactgcattgcgtccaacttttggtactgttggtcgaaccggtataatgagcatatcagaaagcttggtaaaacttaaaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40016800 |
tgcagctcgatgtggcgttactgcattgcgtccaacttttggtactgttggtcgaaccggtataatgagcatatcagaaagcttggtaaaacttaaaatt |
40016899 |
T |
|
| Q |
101 |
accacgttctgccttaggtataatttaaaattgtatgttgaatgttaaactgacatgtaagttgtgtaacctttatactaggataagcttggccctttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40016900 |
accacgttctgccttaggtataatttaaaattgtatgttgaatgttaaactgacatgtaagttgtgtaacctttatactaggataagcttggccctttct |
40016999 |
T |
|
| Q |
201 |
gtagatccgcaattgattgtgctgttgttctggatattattcg |
243 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
40017000 |
gtagatccgcaactgattgtgctgttgttctggatattgttcg |
40017042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University