View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13222_low_19 (Length: 250)
Name: NF13222_low_19
Description: NF13222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13222_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 6488935 - 6489161
Alignment:
| Q |
17 |
cacgtgccacttttttcgattatttttgtgctggagaagatgctatcaccgctggaaaaagtattgccgggttgaatgaagccggtttacgtggaatgct |
116 |
Q |
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| T |
6488935 |
cacgtgccacttttttcgatcatttttgtgccggagaagatgctatcaccgctggaaaaagtattgccgggttgaatgaagcaggtttacgtggaatgct |
6489034 |
T |
|
| Q |
117 |
ggtttatggcgttgaagatgctcatgataatgctggctgtgatcgcaatctcaaaggttttcttcacaccgttgatgtcagcagatcgcttcctccatct |
216 |
Q |
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| T |
6489035 |
ggtttatggcgttgaagatgctcatgataatgctggctgtgatcgcaatctcaaaggttttcttcacaccgttgatgtcagcagatcgcttcctccatct |
6489134 |
T |
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| Q |
217 |
tcggtaatctcttctttatttcatctc |
243 |
Q |
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||||||||||||||||||||||||||| |
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| T |
6489135 |
tcggtaatctcttctttatttcatctc |
6489161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 38 - 223
Target Start/End: Complemental strand, 6328510 - 6328325
Alignment:
| Q |
38 |
atttttgtgctggagaagatgctatcaccgctggaaaaagtatt-gccgggttgaatgaagccggtttacgtggaatgctggtttatggcgttgaagatg |
136 |
Q |
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| T |
6328510 |
atttttgtgctggagaagatgctattactgctggaaagagtataaggtctgtt-aatgaagctggcttacgtggcatgcttgtttttggtgttgaagatg |
6328412 |
T |
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| Q |
137 |
ctcatgataatgctggctgtgatcgcaatctcaaaggttttcttcacaccgttgatgtcagcagatcgcttcctccatcttcggtaa |
223 |
Q |
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| T |
6328411 |
cacatgagaatgatggttgtgatcgtaatcttaaagggtttcttcatactgttgatgttagcaaatcacttcctccttcttctgtaa |
6328325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 38 - 223
Target Start/End: Complemental strand, 6336068 - 6335883
Alignment:
| Q |
38 |
atttttgtgctggagaagatgctatcaccgctggaaaaagtatt-gccgggttgaatgaagccggtttacgtggaatgctggtttatggcgttgaagatg |
136 |
Q |
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||||||||||||||||||||||||| || |||||||| ||||| | ||| |||||||| || |||||||| ||||| |||| ||| |||||||||| |
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| T |
6336068 |
atttttgtgctggagaagatgctattactgctggaaagagtataaggtctgtt-aatgaagctggcttacgtggcatgcttgtttttggtgttgaagatg |
6335970 |
T |
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| Q |
137 |
ctcatgataatgctggctgtgatcgcaatctcaaaggttttcttcacaccgttgatgtcagcagatcgcttcctccatcttcggtaa |
223 |
Q |
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| T |
6335969 |
cacatgagaatgatggttgtgatcgtaatcttaaagggtttcttcatactgttgatgttagcaaatcacttcctccttcttctgtaa |
6335883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 38 - 223
Target Start/End: Complemental strand, 6351053 - 6350868
Alignment:
| Q |
38 |
atttttgtgctggagaagatgctatcaccgctggaaaaagtatt-gccgggttgaatgaagccggtttacgtggaatgctggtttatggcgttgaagatg |
136 |
Q |
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||||||||||||||||||||||||| || |||||||| ||||| | ||| |||||||| || |||||||| ||||| |||| ||| |||||||||| |
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| T |
6351053 |
atttttgtgctggagaagatgctattactgctggaaagagtataaggtctgtt-aatgaagctggcttacgtggcatgcttgtttttggtgttgaagatg |
6350955 |
T |
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| Q |
137 |
ctcatgataatgctggctgtgatcgcaatctcaaaggttttcttcacaccgttgatgtcagcagatcgcttcctccatcttcggtaa |
223 |
Q |
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| T |
6350954 |
cacatgagaatgatggttgtgatcgtaatcttaaagggtttcttcatactgttgatgttagcaaatcacttcctccttcttctgtaa |
6350868 |
T |
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