View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13222_low_2 (Length: 570)
Name: NF13222_low_2
Description: NF13222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13222_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 20 - 561
Target Start/End: Original strand, 40015941 - 40016482
Alignment:
| Q |
20 |
tctatctaggttgttattctttcctagagtgtaaagttatgaacatttatgcctcctgtacaagatgaactagaaattattaggtctgtctatctatctg |
119 |
Q |
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| T |
40015941 |
tctatctaggttgttattctttcctagagtgtaaagttatgaacttttatgcctcctgtacaagatgaactagaaattattaggtctgtctatctatctg |
40016040 |
T |
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| Q |
120 |
atatcttatgactgatatcagtcttttaaacagtacttttgcggaataatatgtttctaagattagaaagctgccgcaactttctgcgtccttttgggat |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
40016041 |
atatcttatgactgatatcagtcttttaaacagtacttttgcggaataatatgtttctaagattagaaagctgccgcaactttctgcatccttttgggat |
40016140 |
T |
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| Q |
220 |
gtactgtatatgctatgaagtattgaaaagttttgttttaaaataaatcttggttttcattgaagggcctcttcatgggattccttatggattgaaggac |
319 |
Q |
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| T |
40016141 |
gtactgtatatgctatgaagtattgaaaagttttgttttaaaataaatcttggttttcattgaagggcctcttcatgggattccttatggattgaaggac |
40016240 |
T |
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| Q |
320 |
ataatatcagtgccagaatacaaaacaacatggggatcaaagtcatttaaaaatcaagttattgacatggaagcttggatctataaaaggcgagatccat |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40016241 |
ataatatcagtgccagaatacaaaacaacatggggatcaaagtcatttaaaaatcaagttattgacatggaagcttggatctataaaaggcgagatccat |
40016340 |
T |
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| Q |
420 |
gac-nnnnnnntctacaatcagaaattatgtttttgaccaattctttttatatatatttgatatgttgttcaacaggttgaaatctgcaggggctgttct |
518 |
Q |
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||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40016341 |
gacaaaaaaaatctacaatcagaaattatgtttttgaccaattc-ttttatatatatttgatatgttgttcaacaggttgaaatctgcaggggctgttct |
40016439 |
T |
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| Q |
519 |
tgttgcaaagcttgtttctggatcattggcttatgatgatgtc |
561 |
Q |
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| T |
40016440 |
tgttgcaaagcttgtttctggatcattggcgtatgatgatgtc |
40016482 |
T |
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