View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13222_low_22 (Length: 246)
Name: NF13222_low_22
Description: NF13222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13222_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 150 - 245
Target Start/End: Original strand, 28801479 - 28801574
Alignment:
| Q |
150 |
agctctgaagatgaagagaagagaagaccatttttgtcaacgctagccagctctttaatgcttcgagaaagtaaaagatttgaggaataaatgaaa |
245 |
Q |
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| T |
28801479 |
agctctgaagatgaagagaagagaagaccatttttgtcaacgctaaccagctctttaatgcttcaagaaagtaaaagatttgaggagtaaatgaaa |
28801574 |
T |
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Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 82 - 151
Target Start/End: Original strand, 28801317 - 28801386
Alignment:
| Q |
82 |
tgaaatgtaatgtctatctgcatctaatatctaaatgtaccacaaggatgcaagaactgaatgcacacag |
151 |
Q |
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| T |
28801317 |
tgaaatgcaatgtctatctgcatctaatatctaaatgtaccacaaggatgcaaaatctgaatgcacacag |
28801386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 28801040 - 28801073
Alignment:
| Q |
21 |
aattgattatgaaaacatgtaaatcaaaacagta |
54 |
Q |
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| T |
28801040 |
aattgattatgaaaacatgtaaagcaaaacagta |
28801073 |
T |
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