View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13222_low_4 (Length: 496)
Name: NF13222_low_4
Description: NF13222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13222_low_4 |
 | |
|
| [»] scaffold0076 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0076 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 23 - 478
Target Start/End: Complemental strand, 47272 - 46823
Alignment:
| Q |
23 |
cacagatatcaatttaagaaggtaaagaggtgtaacttcacatagaaactcattttcaattatcaatttacataacaaaatccatacatacaagactgtg |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47272 |
cacagatatcaatttaagaaggtaaagaggtgtaacttcacatagaaactaatttttaattatcaatttacataacaaaatccatacatacaagactgtg |
47173 |
T |
|
| Q |
123 |
agtaggaatcatttaaattgttccaccggctatatcaagccaatcaaatttaaaataagaac--aagaaaatagaataactattttggtatgaaaatcga |
220 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||| |||||||||||||| | ||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
47172 |
agtaggaatcatttaaattgttcccccggctacatcaagctaatcaaatttaaaacattaacccaagaaaatagaataactattttggtataaaaatcga |
47073 |
T |
|
| Q |
221 |
atcatctattcttaaatattcctgtaaacagaattggagatatcattaagataatacaatcagttgttgcaaggattaatagcaccggcatcgttacgat |
320 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47072 |
atcatctattcttaagtattcttgtaaacagaattggagatatcattaagataatacaatcagttgttgcaaggattaatagcaccggcatcgttacgat |
46973 |
T |
|
| Q |
321 |
tcaaagaaaatccatcagagaggtcaagaaataataggatcgccccaggcatttagcaattaaaaaacacaaattgaaaacaatattcaaatcgtaacaa |
420 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46972 |
tcaaagaaaatccatcagagagggcaacaaataataggatcgccc--------tagcaaataaaaaacacaaattgaaaacaatattcaaatcgtaacaa |
46881 |
T |
|
| Q |
421 |
atttgatcaaacttagggcaagtctatgtggtacatatccaatccacgtgatctttat |
478 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||| |
|
|
| T |
46880 |
atttgatcaaacttagggcaagtttatgtggtacatatccaacctacgtgatctttat |
46823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 26 - 478
Target Start/End: Complemental strand, 11203351 - 11202901
Alignment:
| Q |
26 |
agatatcaatttaagaaggtaaagaggtgtaacttcacatagaaactcattttcaattatcaatttacataacaaaatccatacatacaagactgtgagt |
125 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||| |||||||| ||||| |||||||| |||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
11203351 |
agatatcaatttaagaaggtaaggaggt--aacttcatatagaaaccaatttttaattatcagtttacatagcaaaatccatacatacaaggttgtgagt |
11203254 |
T |
|
| Q |
126 |
aggaatcatttaaattgttccaccggctatatcaagccaatcaaatttaaaataagaacaagaaaatagaataactattttggtatgaaaatcgaatcat |
225 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11203253 |
aggaatcatttaaattgttccaccggctacatcaagccaatcaaatttaaaataagaacaagaaaatagaataactattttggtgtgaaaatcgaatcat |
11203154 |
T |
|
| Q |
226 |
ctattcttaaatattcctgtaaacagaattggagatatcattaagataatacaatcagttgttgcaaggattaatagcaccggcatcgttacgattcaaa |
325 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||| |||| |||||||||||| |
|
|
| T |
11203153 |
ctattcttaaatatccctgtaaacagaattggagatatcattaagataacaacatcagttgttgcaaggactaatagcaccgacatcattacgattcaaa |
11203054 |
T |
|
| Q |
326 |
gaaaatccatcagagaggtcaagaaataataggatcgccccaggcatttagcaattaaaaaacacaaattgaaaacaatattcaaatcgtaacaaatttg |
425 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| | ||| |||||||| |||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
11203053 |
gaaaatccatcagagagggcaagaaataataggatcgccgccggcgtttagcaagtaaaaaacacaaattgaagacaacattcaaatcgtaacaaatttg |
11202954 |
T |
|
| Q |
426 |
atcaaacttagggcaagtctatgtggtacatatccaatccacgtgatctttat |
478 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11202953 |
atcaaacttagggcaagtctatgtggtacatatccaacccacgtgatctttat |
11202901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 23 - 358
Target Start/End: Original strand, 20134318 - 20134653
Alignment:
| Q |
23 |
cacagatatcaatttaagaaggtaaagaggtgtaacttcacatagaaactcattttcaattatcaatttacataacaaaatccatacatacaagactgtg |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20134318 |
cacagatatcaatttaagaaggtaaagaggtgtaacttcacatagaaactaatttttaatcatcaatttacataacaaaatccatacatacaagactgtg |
20134417 |
T |
|
| Q |
123 |
agtaggaatcatttaaattgttccaccggctatatcaagccaatcaaatttaaaataagaacaagaaaatagaataactattttggtatgaaaatcgaat |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
20134418 |
agtaggaatcatttaaattgttccaccggctgtgtcaagccaatcaaatttaaaataagaacaagaaaatagaataactactttggtatgaagatcgaat |
20134517 |
T |
|
| Q |
223 |
catctattcttaaatattcctgtaaacagaattggagatatcattaagataatacaatcagttgttgcaaggattaatagcaccggcatcgttacgattc |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20134518 |
catctattcttaaatattcctgtaaacagaattggagatatcattaagataatacaatcagttgttgcaaggattaatagcaccggcatcgttacgattc |
20134617 |
T |
|
| Q |
323 |
aaagaaaatccatcagagaggtcaagaaataatagg |
358 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |
|
|
| T |
20134618 |
aaagaaaatccatcagagagggcaagaaataatagg |
20134653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 434 - 478
Target Start/End: Original strand, 20134650 - 20134694
Alignment:
| Q |
434 |
tagggcaagtctatgtggtacatatccaatccacgtgatctttat |
478 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
20134650 |
tagggcaagtctatgtggtacatatccaacccacgtgatctttat |
20134694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 23 - 358
Target Start/End: Complemental strand, 44357753 - 44357418
Alignment:
| Q |
23 |
cacagatatcaatttaagaaggtaaagaggtgtaacttcacatagaaactcattttcaattatcaatttacataacaaaatccatacatacaagactgtg |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44357753 |
cacagatatcaatttaagaaggtaaagaggtgtaacttcacatagaaactaatttttaatcatcaatttacataacaaaatccatacatacaagactgtg |
44357654 |
T |
|
| Q |
123 |
agtaggaatcatttaaattgttccaccggctatatcaagccaatcaaatttaaaataagaacaagaaaatagaataactattttggtatgaaaatcgaat |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
44357653 |
agtaggaatcatttaaattgttccaccggctgtgtcaagccaatcaaatttaaaataagaacaagaaaatagaataactactttggtatgaagatcgaat |
44357554 |
T |
|
| Q |
223 |
catctattcttaaatattcctgtaaacagaattggagatatcattaagataatacaatcagttgttgcaaggattaatagcaccggcatcgttacgattc |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44357553 |
catctattcttaaatattcctgtaaacagaattggagatatcattaagataatacaatcagttgttgcaaggattaatagcaccggcatcgttacgattc |
44357454 |
T |
|
| Q |
323 |
aaagaaaatccatcagagaggtcaagaaataatagg |
358 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |
|
|
| T |
44357453 |
aaagaaaatccatcagagagggcaagaaataatagg |
44357418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 434 - 478
Target Start/End: Complemental strand, 44357421 - 44357377
Alignment:
| Q |
434 |
tagggcaagtctatgtggtacatatccaatccacgtgatctttat |
478 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
44357421 |
tagggcaagtctatgtggtacatatccaacccacgtgatctttat |
44357377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 384 - 478
Target Start/End: Complemental strand, 12325336 - 12325242
Alignment:
| Q |
384 |
aaaacacaaattgaaaacaatattcaaatcgtaacaaatttgatcaaacttagggcaagtctatgtggtacatatccaatccacgtgatctttat |
478 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12325336 |
aaaacacaaattgaaaacaatatttaaatcgtaacaaatttgatccaacttagggcaagtctatgtggtacatatccaacccacgtgatctttat |
12325242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 172 - 305
Target Start/End: Original strand, 4431557 - 4431696
Alignment:
| Q |
172 |
ttaaaataagaacaagaaaatagaataactattttggtat------gaaaatcgaatcatctattcttaaatattcctgtaaacagaattggagatatca |
265 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||| ||||||||||| |||| |||| |
|
|
| T |
4431557 |
ttaaaataagaactagaaaatagaataactattttggtatataaatgaaaatagaatcatcttatcttaaatattcccataaacagaatttgagacatca |
4431656 |
T |
|
| Q |
266 |
ttaagataatacaatcagttgttgcaaggattaatagcac |
305 |
Q |
| |
|
|||| || | | ||||||||| |||||| | ||||||||| |
|
|
| T |
4431657 |
ttaaaattacataatcagttgctgcaagaactaatagcac |
4431696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University