View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13222_low_5 (Length: 479)
Name: NF13222_low_5
Description: NF13222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13222_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 4872752 - 4872958
Alignment:
| Q |
1 |
ttttgttactgatggagagattaaagatgctaaaactgtagttgctgtgatggtaaaacctaacgttgctagttatcattcaatcattgatgaactatac |
100 |
Q |
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| T |
4872752 |
ttttgttactgatggagaggttaaagatgctaaaactgtagttgctgtgatggtaaaacctaacgttgctaggtatcattcaatcattgatgaactatac |
4872851 |
T |
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| Q |
101 |
aaaggtcaaagagttagtaagattgcaaaaatcatggaaactttgctacttaacaaactttccattggacaaccctattacatttactcttgaactattt |
200 |
Q |
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| T |
4872852 |
aaaggtcaaagagttagtaagattgcaaaaatcatggaaactttgctatttaacaaactttccattggacaaccatattacatttactcttgaactattt |
4872951 |
T |
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| Q |
201 |
aaagttg |
207 |
Q |
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||||||| |
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| T |
4872952 |
aaagttg |
4872958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 201 - 369
Target Start/End: Original strand, 4877533 - 4877702
Alignment:
| Q |
201 |
aaagttggcttgtttggtgaagcatcgaagttaccaaaagacagcggtggctctcataccataacttgctgagcaactttgcacgctctctccataagct |
300 |
Q |
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| T |
4877533 |
aaagttggcttgtttggtgaagcatcgaagttaccaaaagacagcggtggctctcataccataacttgctgagcaactttgcacgctctctccataagct |
4877632 |
T |
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| Q |
301 |
atggaaataaggatcggaacttgtttgttcgcgga-ttgattgctagaggtctattagattacatgcttt |
369 |
Q |
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| T |
4877633 |
atggaaataaggatcggaacttgtttgttcgcggatttgattgctagaggtctattagattacatgcttt |
4877702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 406 - 469
Target Start/End: Original strand, 4877690 - 4877753
Alignment:
| Q |
406 |
gattacatgctttctagtttgttaaataaggcaaatatgtccttcaaattaacagatacctatg |
469 |
Q |
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| T |
4877690 |
gattacatgctttctagtttgttaaataaggcaaatatgtccttcaaattaacagatacctatg |
4877753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 670484 - 670434
Alignment:
| Q |
343 |
ctagaggtctattagattacatgctttttggtttgctaattaaagaactat |
393 |
Q |
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| T |
670484 |
ctagaggtctattagattacatgctttccagttttctaattaaagaactat |
670434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 399
Target Start/End: Original strand, 28326870 - 28326916
Alignment:
| Q |
354 |
ttagattacatgctttttg-gtttgctaattaaagaactatgctttt |
399 |
Q |
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| T |
28326870 |
ttagattacatgcttttttagtttgctaattaaaggactatgctttt |
28326916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 47569542 - 47569592
Alignment:
| Q |
193 |
aactatttaaagttggcttgtttggtgaagcatcgaagttaccaaaagaca |
243 |
Q |
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| T |
47569542 |
aactatttaaagtgggcttgtttggtgaagcattgacgttatccaaagaca |
47569592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 47924791 - 47924738
Alignment:
| Q |
5 |
gttactgatggagagattaaagatgctaaaactgtagttgctgtgatggtaaaa |
58 |
Q |
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| T |
47924791 |
gttactgaaggagaggttaaagatgctaaaactgtagtggctgtgatggtaaaa |
47924738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 321 - 399
Target Start/End: Complemental strand, 47923090 - 47923009
Alignment:
| Q |
321 |
ttgtttgttcgcggattgattgctagaggtctatta---gattacatgctttttggtttgctaattaaagaactatgctttt |
399 |
Q |
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| T |
47923090 |
ttgttcgttcgtgggttgattgctagaggtctattatcagattatatgcttattggtttgctaatcaaagaactatgatttt |
47923009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 9066862 - 9066898
Alignment:
| Q |
363 |
atgctttttggtttgctaattaaagaactatgctttt |
399 |
Q |
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| T |
9066862 |
atgctttttggtttgctaattgaaggactatgctttt |
9066898 |
T |
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