View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13222_low_9 (Length: 379)

Name: NF13222_low_9
Description: NF13222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13222_low_9
NF13222_low_9
[»] chr1 (11 HSPs)
chr1 (19-374)||(4872424-4872761)
chr1 (238-294)||(6326689-6326745)
chr1 (238-295)||(14508749-14508806)
chr1 (239-283)||(12535423-12535467)
chr1 (238-294)||(28239162-28239218)
chr1 (239-294)||(12532934-12532989)
chr1 (238-281)||(28231589-28231632)
chr1 (238-283)||(28326411-28326456)
chr1 (142-194)||(677215-677263)
chr1 (239-305)||(12540654-12540720)
chr1 (238-283)||(47569252-47569297)
[»] chr5 (1 HSPs)
chr5 (238-295)||(1717979-1718036)
[»] chr2 (2 HSPs)
chr2 (238-295)||(9066378-9066435)
chr2 (238-279)||(9068561-9068602)
[»] chr3 (1 HSPs)
chr3 (237-289)||(47924856-47924908)


Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 374
Target Start/End: Original strand, 4872424 - 4872761
Alignment:
Q  19 atctagtcggtagcttatgtgagataggtgaaactaaaagagccatccacttgttcagaaagatagagatggatcttaacagccttcacgaatatgttct 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||||||||||||||    
T  4872424 atctagtcggtagcttatgtgagataggtgaaactaaaagagccatccacttg------------------gatcttaacagccttcacgaatatgttct 4872505  T
Q  119 acaggtacataatatgcaggctgtgcaaagatagacttgtacgtacatcaagcctatgatttttattctgaaatgactgctaagaatatcagctttggtt 218  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4872506 acaggtacataatacgcaggctgtgcaaagatagacttgtacgtacatcaagcctatgatttttattctgaaatgactgctaagaatatcagctgtggtt 4872605  T
Q  219 ctactatatatcgtaatctatctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttaggcaatttgggccagagccaccac 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4872606 ctactatatatcgtaatctatctaatctatggctattgcatcctcggtcaatttaaacaagcaatcaccttctttaggcaatttgggccagagccaccac 4872705  T
Q  319 tttacatccttccctgtccaagttttaatgttgcccttgcctctgcctttgctact 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  4872706 tttacatccttccctgtccaagttttaatgttgcccttgcctctgcttttgttact 4872761  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 238 - 294
Target Start/End: Complemental strand, 6326745 - 6326689
Alignment:
Q  238 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttcttta 294  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||    
T  6326745 atctaatctatggctattgcatcctcggtcaatttgaacaagcaattgccttgttta 6326689  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 14508806 - 14508749
Alignment:
Q  238 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttag 295  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||| ||||| |||||    
T  14508806 atctaatctatggttattgcatcgtcggtcaatttaaacaagcaattgccttgtttag 14508749  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 12535467 - 12535423
Alignment:
Q  239 tctaatctatggctattgcatcctcggtcaatttaaacaagcaat 283  Q
    ||||||||||||||||||||||  |||||||||||||||||||||    
T  12535467 tctaatctatggctattgcatcaccggtcaatttaaacaagcaat 12535423  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 238 - 294
Target Start/End: Original strand, 28239162 - 28239218
Alignment:
Q  238 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttcttta 294  Q
    ||||| ||||||| |||||||||||||||||||||||||| ||||| | ||||||||    
T  28239162 atctagtctatggttattgcatcctcggtcaatttaaacaggcaattgacttcttta 28239218  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 294
Target Start/End: Complemental strand, 12532989 - 12532934
Alignment:
Q  239 tctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttcttta 294  Q
    ||||||||||||||||| ||||  ||||||||||||||||||||| ||||| ||||    
T  12532989 tctaatctatggctattacatcaacggtcaatttaaacaagcaattgccttgttta 12532934  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 281
Target Start/End: Original strand, 28231589 - 28231632
Alignment:
Q  238 atctaatctatggctattgcatcctcggtcaatttaaacaagca 281  Q
    ||||||||||||| |||||||||||||||||||||||| |||||    
T  28231589 atctaatctatggttattgcatcctcggtcaatttaaagaagca 28231632  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 283
Target Start/End: Original strand, 28326411 - 28326456
Alignment:
Q  238 atctaatctatggctattgcatcctcggtcaatttaaacaagcaat 283  Q
    ||||||||| ||||||||| ||| ||||||||||||||||||||||    
T  28326411 atctaatctttggctattgtatcatcggtcaatttaaacaagcaat 28326456  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 677215 - 677263
Alignment:
Q  142 tgcaaagatagacttgtacgtacatcaagcctatgatttttattctgaaatga 194  Q
    |||||||||||||||||||    |||||||||||||||| |||||||||||||    
T  677215 tgcaaagatagacttgtac----atcaagcctatgatttatattctgaaatga 677263  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 305
Target Start/End: Original strand, 12540654 - 12540720
Alignment:
Q  239 tctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttaggcaatttggg 305  Q
    |||| |||||||||||||||||   ||||||||||| |||||||| ||||| |||||  ||||||||    
T  12540654 tctagtctatggctattgcatcactggtcaatttaagcaagcaattgccttgtttagagaatttggg 12540720  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 283
Target Start/End: Original strand, 47569252 - 47569297
Alignment:
Q  238 atctaatctatggctattgcatcctcggtcaatttaaacaagcaat 283  Q
    |||||| |||||| ||||||||||| |||||||| |||||||||||    
T  47569252 atctaacctatggttattgcatcctgggtcaattcaaacaagcaat 47569297  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 295
Target Start/End: Original strand, 1717979 - 1718036
Alignment:
Q  238 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttag 295  Q
    ||||||||||||| ||||||||| | |||||||||||||||||||| ||||| |||||    
T  1717979 atctaatctatggttattgcatcgttggtcaatttaaacaagcaattgccttgtttag 1718036  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 295
Target Start/End: Original strand, 9066378 - 9066435
Alignment:
Q  238 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttag 295  Q
    ||||||||||||| ||||| ||| ||||||||||||||| |||||| ||||| |||||    
T  9066378 atctaatctatggttattgtatcgtcggtcaatttaaaccagcaattgccttgtttag 9066435  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 279
Target Start/End: Original strand, 9068561 - 9068602
Alignment:
Q  238 atctaatctatggctattgcatcctcggtcaatttaaacaag 279  Q
    ||||||||||||||||||||||| | ||||||||||||||||    
T  9068561 atctaatctatggctattgcatcgttggtcaatttaaacaag 9068602  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 289
Target Start/End: Complemental strand, 47924908 - 47924856
Alignment:
Q  237 tatctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgcctt 289  Q
    ||||||||| |||||||||||||| ||||| ||||||||||||| || |||||    
T  47924908 tatctaatcaatggctattgcatcatcggtgaatttaaacaagcgattgcctt 47924856  T

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