View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13223_high_1 (Length: 238)
Name: NF13223_high_1
Description: NF13223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13223_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 23134876 - 23134642
Alignment:
| Q |
1 |
cacaagaccacacctgaaccgcacgtgccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagttcaagaaaatgatcccaccttag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23134876 |
cacaagaccacacctgaaccgcacgtgccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagttcaagaaaatgatcccaccttag |
23134777 |
T |
|
| Q |
101 |
tcaataatccaacacctgaacccgaccctaattcaagtttcatgctcgccacccccattccaaatgaccaagaagctaaccaccccacaaaagaccaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23134776 |
tcaataatccaacacctgaacccgaccctaattcaagtttcatgctcgccacccccattccaaatgaccaagaagctaaccaccccacaaaagaccaaat |
23134677 |
T |
|
| Q |
201 |
tggtgaaactagctatcataaggatgatgtccatc |
235 |
Q |
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|||||||||||||||||||||||||||||| |||| |
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| T |
23134676 |
tggtgaaactagctatcataaggatgatgttcatc |
23134642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 20282705 - 20282939
Alignment:
| Q |
1 |
cacaagaccacacctgaaccgcacgtgccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagttcaagaaaatgatcccaccttag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20282705 |
cacaagaccacacctgaaccgcacgtgccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagttcaagaaaatgatcccaccttag |
20282804 |
T |
|
| Q |
101 |
tcaataatccaacacctgaacccgaccctaattcaagtttcatgctcgccacccccattccaaatgaccaagaagctaaccaccccacaaaagaccaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20282805 |
tcaataatccaacacctgaacccgaccctaattcaagtttcatgctcgccacccccattccaaatgaccaagaagctaaccaccccacaaaagaccaaat |
20282904 |
T |
|
| Q |
201 |
tggtgaaactagctatcataaggatgatgtccatc |
235 |
Q |
| |
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|||||||||||||||||||||||||||||| |||| |
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| T |
20282905 |
tggtgaaactagctatcataaggatgatgttcatc |
20282939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 11895004 - 11895238
Alignment:
| Q |
1 |
cacaagaccacacctgaaccgcacgtgccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagttcaagaaaatgatcccaccttag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11895004 |
cacaagaccacacctgaaccgcacgtgccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagttcaagaaaatgatcccaccttag |
11895103 |
T |
|
| Q |
101 |
tcaataatccaacacctgaacccgaccctaattcaagtttcatgctcgccacccccattccaaatgaccaagaagctaaccaccccacaaaagaccaaat |
200 |
Q |
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|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11895104 |
tcaataatccaacacctgaacccgacccgaattcaagtttcatgctcgccacccccattctaaatgaccaagaagctaaccaccccacaaaagaccaaat |
11895203 |
T |
|
| Q |
201 |
tggtgaaactagctatcataaggatgatgtccatc |
235 |
Q |
| |
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|||||||||||||||||||||||||||||| |||| |
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|
| T |
11895204 |
tggtgaaactagctatcataaggatgatgttcatc |
11895238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 119
Target Start/End: Complemental strand, 14655975 - 14655859
Alignment:
| Q |
3 |
caagaccacacctgaaccgcacgtgccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagttcaagaaaatgatcccaccttagtc |
102 |
Q |
| |
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|||| |||| ||||||||||||||||| |||||||| ||||| ||||||| ||||||||||||||| ||||||| |||| |||||| ||||| | || |
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| T |
14655975 |
caaggccactcctgaaccgcacgtgcctaaaacaactcaacaattaccaaataaacaaactaccactaatgaagctcaaaaaaatgttcccattgttatc |
14655876 |
T |
|
| Q |
103 |
aataatccaacacctga |
119 |
Q |
| |
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||||||| ||||||||| |
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| T |
14655875 |
aataatcaaacacctga |
14655859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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