View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13223_low_1 (Length: 309)
Name: NF13223_low_1
Description: NF13223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13223_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 95 - 214
Target Start/End: Original strand, 1977562 - 1977681
Alignment:
| Q |
95 |
ccaatttctctgattctaggcctgcatattatcacacctgttgtttcagttagatatcaacacaggaaaaacaaaactcatctgcaagaggttgtctgtg |
194 |
Q |
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|||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||| |
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| T |
1977562 |
ccaatttctctgattctaggccggcatattatcacgcctgctgtttcagttagatatctacacaggaaaaacaaaactcatctgcaagagactatctgtg |
1977661 |
T |
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| Q |
195 |
agactagatttgcacaaaac |
214 |
Q |
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||| ||||||||||||||| |
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| T |
1977662 |
agatcagatttgcacaaaac |
1977681 |
T |
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