View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13223_low_3 (Length: 227)
Name: NF13223_low_3
Description: NF13223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13223_low_3 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 4953527 - 4953753
Alignment:
| Q |
1 |
tcatcatatcagttgggcttgtatacctaacaaaatgaagtaaaaaagaacaattagccaacacataatgatagatagatattcattcactaacccaact |
100 |
Q |
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| T |
4953527 |
tcatcatatcagttgggcttgtatacctaacaaaatgaagtaaaaaaaaacaattagccaacacataatgatagatagatattcattcactaacccaact |
4953626 |
T |
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| Q |
101 |
atggacacaaaaattgattttgaatgtataaattctttaaaattggtttcaacataaaagtgatttacttttgataaattaaaaaataattgcagaaaca |
200 |
Q |
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| T |
4953627 |
aaggacacaaaaattgattttgaatgtataaattctttaaaattggtttcaacataaaagtgatttacttttgataaattaaaaaataattgcagaaaca |
4953726 |
T |
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| Q |
201 |
aaaattacaaattctagttttaaatta |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
4953727 |
aaaattacaaattctagttttaaatta |
4953753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 4937818 - 4938044
Alignment:
| Q |
1 |
tcatcatatcagttgggcttgtatacctaacaaaatgaagtaaaaaagaacaattagccaacacataatgatagatagatattcattcactaacccaact |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4937818 |
tcatcatatcagttgggcttgtatacctaacaaaatgaagtaaaaaataacaattagccaacacataatgatagatagatattcattcactaacccaact |
4937917 |
T |
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| Q |
101 |
atggacacaaaaattgattttgaatgtataaattctttaaaattggtttcaacataaaagtgatttacttttgataaattaaaaaataattgcagaaaca |
200 |
Q |
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| T |
4937918 |
aaggacacaaaaattgattttgaatgtataaattctttaaaattggtttcaacataaaagtgatttacttttgataaatttaaaaataattgcagaaaca |
4938017 |
T |
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| Q |
201 |
aaaattacaaattctagttttaaatta |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
4938018 |
aaaattacaaattctagttttaaatta |
4938044 |
T |
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