View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13224_low_1 (Length: 557)

Name: NF13224_low_1
Description: NF13224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13224_low_1
NF13224_low_1
[»] chr5 (37 HSPs)
chr5 (1-535)||(38433937-38434481)
chr5 (207-537)||(2226386-2226716)
chr5 (177-543)||(12680548-12680914)
chr5 (246-543)||(9161226-9161521)
chr5 (255-543)||(36103162-36103450)
chr5 (176-543)||(32520697-32521059)
chr5 (174-543)||(332761-333122)
chr5 (228-534)||(12165467-12165773)
chr5 (232-538)||(30265326-30265626)
chr5 (177-431)||(36176362-36176616)
chr5 (176-478)||(10174371-10174665)
chr5 (207-538)||(36176623-36176934)
chr5 (368-534)||(35893238-35893405)
chr5 (342-535)||(17084513-17084706)
chr5 (414-543)||(38334674-38334803)
chr5 (228-543)||(23780977-23781263)
chr5 (228-543)||(23867930-23868216)
chr5 (177-364)||(15068825-15069012)
chr5 (209-346)||(42545822-42545959)
chr5 (228-364)||(11917804-11917940)
chr5 (241-364)||(666869-666992)
chr5 (241-364)||(27885684-27885807)
chr5 (233-364)||(38334344-38334475)
chr5 (401-537)||(9988586-9988722)
chr5 (241-364)||(701566-701689)
chr5 (241-364)||(8409335-8409458)
chr5 (241-364)||(30002347-30002470)
chr5 (356-538)||(42544902-42545086)
chr5 (181-345)||(35359464-35359623)
chr5 (176-365)||(35893443-35893626)
chr5 (300-359)||(691167-691226)
chr5 (176-350)||(2423279-2423453)
chr5 (337-395)||(9988538-9988593)
chr5 (177-288)||(9988409-9988520)
chr5 (305-359)||(18432556-18432610)
chr5 (245-359)||(23623469-23623583)
chr5 (331-361)||(27571668-27571698)
[»] chr8 (16 HSPs)
chr8 (207-543)||(30392324-30392659)
chr8 (176-536)||(14549478-14549834)
chr8 (246-543)||(36827334-36827631)
chr8 (253-535)||(33068844-33069121)
chr8 (177-543)||(18169505-18169865)
chr8 (177-543)||(18633071-18633431)
chr8 (276-543)||(10661392-10661658)
chr8 (228-537)||(3682169-3682472)
chr8 (246-402)||(44673109-44673265)
chr8 (223-443)||(6200455-6200675)
chr8 (266-537)||(36909910-36910165)
chr8 (253-350)||(5802505-5802602)
chr8 (253-355)||(3006186-3006283)
chr8 (266-350)||(42496462-42496546)
chr8 (312-355)||(19539686-19539729)
chr8 (331-359)||(1271600-1271628)
[»] chr3 (19 HSPs)
chr3 (246-538)||(6003935-6004227)
chr3 (232-538)||(35531690-35531991)
chr3 (254-543)||(21586402-21586685)
chr3 (346-543)||(50562223-50562420)
chr3 (275-494)||(32880599-32880813)
chr3 (246-399)||(48032683-48032836)
chr3 (335-543)||(33002761-33002969)
chr3 (407-543)||(27641871-27642007)
chr3 (275-543)||(43030671-43030919)
chr3 (233-364)||(10369610-10369741)
chr3 (347-538)||(39098187-39098378)
chr3 (241-364)||(35401771-35401894)
chr3 (177-364)||(51149205-51149392)
chr3 (177-364)||(33361312-33361499)
chr3 (246-364)||(4669199-4669317)
chr3 (275-364)||(34794923-34795012)
chr3 (207-350)||(27641725-27641868)
chr3 (207-355)||(10481078-10481226)
chr3 (310-381)||(55130150-55130221)
[»] chr6 (10 HSPs)
chr6 (177-543)||(35039411-35039777)
chr6 (280-536)||(33550574-33550830)
chr6 (176-543)||(13801454-13801816)
chr6 (203-543)||(25137388-25137727)
chr6 (275-543)||(15859972-15860239)
chr6 (275-478)||(10591147-10591350)
chr6 (228-536)||(10390564-10390858)
chr6 (241-364)||(5866619-5866742)
chr6 (241-364)||(12270905-12271028)
chr6 (246-392)||(10493933-10494079)
[»] chr4 (25 HSPs)
chr4 (176-536)||(48996330-48996690)
chr4 (246-538)||(40899626-40899918)
chr4 (176-543)||(32136936-32137306)
chr4 (177-543)||(30193453-30193819)
chr4 (228-543)||(8176136-8176441)
chr4 (276-543)||(6333560-6333832)
chr4 (275-543)||(40806396-40806656)
chr4 (177-543)||(10218927-10219283)
chr4 (312-543)||(23937130-23937361)
chr4 (278-543)||(52344952-52345216)
chr4 (177-543)||(31301643-31301999)
chr4 (241-380)||(26477730-26477869)
chr4 (324-543)||(43630795-43630996)
chr4 (414-518)||(29639724-29639828)
chr4 (172-364)||(50570490-50570682)
chr4 (176-364)||(29639994-29640182)
chr4 (177-364)||(42558082-42558269)
chr4 (228-365)||(5261379-5261516)
chr4 (246-364)||(36078683-36078801)
chr4 (241-364)||(29643308-29643431)
chr4 (275-422)||(52345216-52345353)
chr4 (176-355)||(1564490-1564669)
chr4 (181-359)||(41325862-41326040)
chr4 (335-364)||(51395253-51395282)
chr4 (247-359)||(48338805-48338917)
[»] scaffold0059 (2 HSPs)
scaffold0059 (177-543)||(69008-69374)
scaffold0059 (177-462)||(77114-77399)
[»] chr2 (17 HSPs)
chr2 (180-544)||(25297732-25298096)
chr2 (241-543)||(44979312-44979614)
chr2 (247-543)||(11376130-11376421)
chr2 (275-543)||(44035553-44035821)
chr2 (177-543)||(19936598-19936959)
chr2 (300-543)||(17916454-17916699)
chr2 (180-472)||(18360115-18360407)
chr2 (223-543)||(34910552-34910873)
chr2 (414-543)||(20420443-20420572)
chr2 (177-364)||(9811739-9811926)
chr2 (176-351)||(16579002-16579177)
chr2 (241-364)||(20420777-20420900)
chr2 (241-364)||(36412898-36413021)
chr2 (275-365)||(42785101-42785191)
chr2 (468-543)||(18357514-18357589)
chr2 (241-355)||(41166625-41166739)
chr2 (175-359)||(44085956-44086139)
[»] scaffold0013 (2 HSPs)
scaffold0013 (177-543)||(106278-106645)
scaffold0013 (337-543)||(128885-129092)
[»] chr1 (21 HSPs)
chr1 (177-543)||(33910249-33910615)
chr1 (246-543)||(39256177-39256474)
chr1 (241-543)||(24910590-24910892)
chr1 (182-543)||(16528970-16529330)
chr1 (174-543)||(51251900-51252259)
chr1 (275-543)||(33474685-33474953)
chr1 (176-543)||(45692040-45692402)
chr1 (275-543)||(32954323-32954586)
chr1 (254-543)||(1160583-1160856)
chr1 (202-538)||(44918790-44919112)
chr1 (243-459)||(11899367-11899584)
chr1 (407-538)||(29389281-29389412)
chr1 (262-417)||(6722380-6722529)
chr1 (275-364)||(8211639-8211728)
chr1 (275-364)||(20494094-20494183)
chr1 (241-364)||(29707683-29707801)
chr1 (275-364)||(5154968-5155057)
chr1 (275-333)||(29390133-29390191)
chr1 (305-359)||(45949097-45949151)
chr1 (241-355)||(17652198-17652312)
chr1 (331-359)||(12974036-12974064)
[»] chr7 (30 HSPs)
chr7 (177-538)||(43429417-43429778)
chr7 (228-543)||(24360819-24361132)
chr7 (176-494)||(42910153-42910466)
chr7 (228-543)||(22366694-22366999)
chr7 (228-534)||(10069816-10070112)
chr7 (178-537)||(32823846-32824195)
chr7 (241-543)||(13852552-13852852)
chr7 (266-533)||(31876208-31876470)
chr7 (177-536)||(36921029-36921385)
chr7 (175-459)||(27054198-27054483)
chr7 (246-450)||(18672762-18672966)
chr7 (228-543)||(47903478-47903778)
chr7 (241-537)||(31982208-31982480)
chr7 (331-537)||(48675362-48675568)
chr7 (246-467)||(5932944-5933159)
chr7 (177-364)||(47070027-47070214)
chr7 (233-364)||(3211735-3211866)
chr7 (177-364)||(10672178-10672365)
chr7 (177-350)||(8768203-8768376)
chr7 (177-345)||(11205915-11206083)
chr7 (176-364)||(12117959-12118147)
chr7 (276-364)||(47204093-47204181)
chr7 (472-543)||(18672962-18673033)
chr7 (453-545)||(36508932-36509024)
chr7 (246-405)||(36509028-36509173)
chr7 (207-359)||(40849325-40849477)
chr7 (228-303)||(1335884-1335959)
chr7 (258-359)||(524383-524484)
chr7 (258-359)||(29628680-29628781)
chr7 (331-359)||(30079179-30079207)
[»] scaffold0029 (2 HSPs)
scaffold0029 (246-543)||(40116-40413)
scaffold0029 (246-514)||(47312-47580)
[»] scaffold0308 (1 HSPs)
scaffold0308 (176-364)||(5389-5577)
[»] scaffold0204 (1 HSPs)
scaffold0204 (247-359)||(26327-26439)


Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 535
Target Start/End: Complemental strand, 38434481 - 38433937
Alignment:
Q  1 cctttcacgttgtttttagcaattgtcgcactttatgtttttctttttgaatttggtagtccatctcccgattttgaagcctctcaattttgtctaaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38434481 cctttcacgttgtttttagcaattgtcgcactttatgtttttctttttgaatttggtagtccatctcccgattttgaagcctctcaattttgtctaaaat 38434382  T
Q  101 ttactttgagatgatatcatttattgacgtgataattaaa-gttatagtcggtgtataatagaacacaacaagttttta-------------ggggtgtt 186  Q
    ||||||||||||||||| |||||||||||||||| ||||  |||||||||||||||||||    |||||||| ||||||             ||||||||    
T  38434381 ttactttgagatgatataatttattgacgtgatatttaactgttatagtcggtgtataat----cacaacaaatttttattggtcaaaattaggggtgtt 38434286  T
Q  187 taaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttggatgacttttg 286  Q
     ||||||||||||| |||||||||||||||||||| ||| ||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  38434285 caaaaccaaatcaactcaacagaaaaatcgtaaaccaaactaatccaaatcgaaaccgcaaaaaatcgcacttggtttagatgaatttggatgacttttg 38434186  T
Q  287 cactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattacttaaacttgta 386  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38434185 cactgaaccgtgaggttcggtttgatttgcggtttgtatctcagcaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattacttaaacttgta 38434086  T
Q  387 ctagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccatctcctttaatt 486  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||    
T  38434085 ctagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgcaccatcacgttcgattctaattctttttcatctcctttaatt 38433986  T
Q  487 catttccaatgatgaatttattttcttttcttcccaataatttgtttca 535  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38433985 catttccaatgatgaatttattttcttttcttcccaataatttgtttca 38433937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 207 - 537
Target Start/End: Original strand, 2226386 - 2226716
Alignment:
Q  207 agaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcgg 306  Q
    ||||||||||||||  ||||||||  ||||||| |||| |||||| |||||||||||  |||||||| |||||||||||||||| ||||||| ||||| |    
T  2226386 agaaaaatcgtaaatcaaattaattcaaatcgaaaccgcaaaaaaccgcacttggttcggatgaattcggatgacttttgcacttaaccgcgcggttcag 2226485  T
Q  307 tttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcct 406  Q
    || | ||||||||||| |||||| ||||||||||||||||||||||||||| |||||||  |||||||||||||| |||| |||||||||||||||||      
T  2226486 ttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgccagaataatgaatattacttaaacatgtattagcccaattacatagctc 2226585  T
Q  407 aagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccatctcctttaattcatttccaatgatgaattta 506  Q
    | |||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||| || |||||||||||  |||||||| |     
T  2226586 atgaataatctcttttgattcgatttttccattgttgcaccatcaggttcgattctaattcctttccatctctttcaattcatttcctgtgatgaatatg 2226685  T
Q  507 ttttcttttcttcccaataatttgtttcatg 537  Q
    ||| |||| ||||||||||||||||||||||    
T  2226686 tttcctttacttcccaataatttgtttcatg 2226716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 177 - 543
Target Start/End: Original strand, 12680548 - 12680914
Alignment:
Q  177 taggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttgg 276  Q
    |||||||||| |||||| || ||| |||| ||||||| || |||  |||  |||| |||  || |||| |||||| ||||||||||| ||||||||| ||    
T  12680548 taggggtgttcaaaaccgaaccaattcaatagaaaaaccgcaaatcaaaccaatccaaactgaaaccgcaaaaaaccgcacttggttcagatgaattcgg 12680647  T
Q  277 atgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattact 376  Q
    |||||||||||| ||||||||| |||| |||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||| |  |||||||||    
T  12680648 atgacttttgcaatgaaccgcgcggtttggtttggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaagaatgatgaatattact 12680747  T
Q  377 taaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccatc 476  Q
    ||||| |||||||||||||||||||| | ||| ||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  12680748 taaacatgtactagcccaattacataacttaaaaataatctcttttgattcgatttttccattgttgcaccatcaggttcgattctaattcctttccatc 12680847  T
Q  477 tcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgcctatg 543  Q
    || || |||||||||| | |||||||||| ||| |||| |||  |||||||||||||||||| ||||    
T  12680848 tctttcaattcatttcaagtgatgaatttgtttcctttacttttcaataatttgtttcatgcttatg 12680914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 246 - 543
Target Start/End: Complemental strand, 9161521 - 9161226
Alignment:
Q  246 aaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaacc 345  Q
    |||||| || ||||||||  ||||||||  ||||||||||||||||||||| | ||||||||| | ||||||||||| |||||| |||||||||||||||    
T  9161521 aaaaaaccgtacttggttcggatgaattcagatgacttttgcactgaaccgtgcggttcggttcggtttgcggtttgaatctcagcaaccgaaccaaacc 9161422  T
Q  346 aaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgta 445  Q
    ||||| ||||||||||||||  |||||||||||||  || ||||||||||  |||||||  |  ||||||||||||| |||||||||||||||||||| |    
T  9161421 aaacccaaccgcaagaataatgaatattacttaaatatgcactagcccaa--acatagctcagaaataatctcttttgattcgatttttccattgttgca 9161324  T
Q  446 ccatcacgttcgattctaattcctttccatctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgcctatg 543  Q
    |||||| |||| ||||||||||||||||||||| || |||||||||||| |||||||||||||| |||| ||||||||||||||||||||||| ||||    
T  9161323 ccatcaagttcaattctaattcctttccatctctttgaattcatttccagtgatgaatttatttcctttacttcccaataatttgtttcatgcttatg 9161226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 255 - 543
Target Start/End: Original strand, 36103162 - 36103450
Alignment:
Q  255 cacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaac 354  Q
    |||||||||  ||||||||  ||||||||||||||||||||||| |||||| |||| ||||  ||||| |||||| ||||||||||||||||||||||||    
T  36103162 cacttggttcggatgaattcagatgacttttgcactgaaccgcgcggttcgttttggtttgtagtttgcatctcagcaaccgaaccaaaccaaaccaaac 36103261  T
Q  355 cgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgt 454  Q
    |||||||||||  |||||||||| ||| ||||||||||||| ||||||||  ||||||||||  |||| |||||||||||||||||||| ||||||| ||    
T  36103262 cgcaagaataatgaatattacttgaacatgtactagcccaactacatagctcaagaataatcgtttttgattcgatttttccattgttgcaccatcaagt 36103361  T
Q  455 tcgattctaattcctttccatctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgcctatg 543  Q
    |||||||||||||||||||||||| || ||||||||| || |||||||||| |||  ||| ||| |||||||||||||| |||| ||||    
T  36103362 tcgattctaattcctttccatctctttcaattcatttacagtgatgaatttgtttcatttactttccaataatttgtttgatgcttatg 36103450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 176 - 543
Target Start/End: Original strand, 32520697 - 32521059
Alignment:
Q  176 ttaggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttg 275  Q
    ||||||||||| |||||| || |||  ||| ||||||| || |||| |||  |||| ||| ||| |||| |||||| |||||||||||  |||||||| |    
T  32520697 ttaggggtgttcaaaaccgaaccaacccaatagaaaaaccgcaaaccaaaccaatccaaaccgaaaccgcaaaaaaccgcacttggttcggatgaattcg 32520796  T
Q  276 gatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattac 375  Q
    ||||||||||||| ||||||||| ||||||||||| |||||| | || |||||| ||||||||||     |||||||||||||||||| |  ||||||||    
T  32520797 gatgacttttgcaatgaaccgcgcggttcggtttggtttgcgatctgcatctcagcaaccgaacc-----aaaccaaaccgcaagaatgatgaatattac 32520891  T
Q  376 ttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccat 475  Q
    |||||  ||||||||||||||||||||   ||||||||||||||||| ||||||||||| |||||||| ||||||| ||||||||||| ||| |||||||    
T  32520892 ttaaagatgtactagcccaattacataatttaagaataatctcttttgattcgattttttcattgttgcaccatcaggttcgattctagttcatttccat 32520991  T
Q  476 ctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgcctatg 543  Q
    ||| || |||||||||| | |||||||||| |||  ||| ||||||||||||||||||||||| ||||    
T  32520992 ctctttcaattcatttcaagtgatgaatttgtttcttttacttcccaataatttgtttcatgcttatg 32521059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 174 - 543
Target Start/End: Original strand, 332761 - 333122
Alignment:
Q  174 ttttaggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatt 273  Q
    ||||| ||||||| |||||| || |||  ||| |||||||||||||||||||| |||  ||| ||| | ||||||||| |||||||||||              
T  332761 ttttaagggtgttcaaaaccgaaccaacccaatagaaaaatcgtaaactaaatcaattcaaaccgaaatcgtaaaaaaccgcacttggttc--------- 332851  T
Q  274 tggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatatt 373  Q
     ||| ||||||||||||||||||||  |||||||||| ||||||||||| |||||| || |||||||||||||||| |||||||||||||||  ||||||    
T  332852 -ggacgacttttgcactgaaccgcgcagttcggtttggtttgcggtttgcatctcagcatccgaaccaaaccaaactaaaccgcaagaataatgaatatt 332950  T
Q  374 acttaaacttgtactagcccaattac--atagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattccttt 471  Q
    |||||||| |||||| ||||||||||  |||||  ||||||||||| |||| |||||||||||||||  ||| ||||||| |||||||||||||||||||    
T  332951 acttaaacatgtactggcccaattacatatagctcaagaataatctattttgattcgatttttccataattgcaccatcaagttcgattctaattccttt 333050  T
Q  472 ccatctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgcctatg 543  Q
    | ||||| || |||||||||||  ||||||||||||||  ||| ||||||||||||||||||||||| ||||    
T  333051 ctatctctttcaattcatttcccgtgatgaatttatttcttttacttcccaataatttgtttcatgcttatg 333122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 228 - 534
Target Start/End: Original strand, 12165467 - 12165773
Alignment:
Q  228 aatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatct 327  Q
    |||| ||| ||| |||| |||||| |||||||||||  |||||||| |||||||||||||||||||||||  ||||||||| | ||||| ||||| ||||    
T  12165467 aatccaaaccgaaaccgcaaaaaaccgcacttggttcggatgaattcggatgacttttgcactgaaccgcatggttcggttcggtttgcagtttgcatct 12165566  T
Q  328 caacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattc 427  Q
    || |||| ||||||||| ||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||  |||||||||||||||  ||||    
T  12165567 cagcaactgaaccaaacgaaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctctttcgattc 12165666  T
Q  428 gatttttccattgttgtaccatcacgttcgattctaattcctttccatctcctttaattcatttccaatgatgaatttattttcttttcttcccaataat 527  Q
    ||| |||||||||||| ||||||| |||| ||| |||||||||| |||||| ||  ||| ||||||| |||||||||| ||| |||| |||  |||||||    
T  12165667 gatctttccattgttgcaccatcaggttcaattttaattccttttcatctctttcgatttatttccagtgatgaatttgtttcctttacttgtcaataat 12165766  T
Q  528 ttgtttc 534  Q
    |||||||    
T  12165767 ttgtttc 12165773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 232 - 538
Target Start/End: Original strand, 30265326 - 30265626
Alignment:
Q  232 taaatcgataccgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaac 331  Q
    |||||||| | |||||||||||||||||| ||  ||||||||  ||||||||||||||| ||||     || ||||| | ||||||||||| |||||| |    
T  30265326 taaatcgaaatcgtaaaaaatcgcacttgattcggatgaattcagatgacttttgcactaaacc-----gtacggttcggtttgcggtttgcatctcagc 30265420  T
Q  332 aaccgaaccaaaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatt 431  Q
    |||||||||||| ||||||||| |||||||||||  |||||||||||| | ||| ||||||||||||||||||  || ||||| | |||| |||||||||    
T  30265421 aaccgaaccaaatcaaaccaaatcgcaagaataatgaatattacttaatcatgtgctagcccaattacatagctcaaaaataa-cgctttcaattcgatt 30265519  T
Q  432 tttccattgttgtaccatcacgttcgattctaattcctttccatctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgt 531  Q
    |||||||||||| ||||||| ||||||||||||||  |||||||||| || |||||||||||| |||||||||| ||| |||| ||||||||||||||||    
T  30265520 tttccattgttgcaccatcaagttcgattctaattattttccatctctttcaattcatttccagtgatgaatttgtttcctttacttcccaataatttgt 30265619  T
Q  532 ttcatgc 538  Q
    |||||||    
T  30265620 ttcatgc 30265626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 177 - 431
Target Start/End: Original strand, 36176362 - 36176616
Alignment:
Q  177 taggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttgg 276  Q
    |||||||||| |||||| || |||  ||| ||||||| |||||||||||  |||| ||||||| |||| ||||||||||||||||||   ||||||| ||    
T  36176362 taggggtgttcaaaaccgaaccaacccaatagaaaaaccgtaaactaaaccaatccaaatcgaaaccgcaaaaaatcgcacttggttcgaatgaattcgg 36176461  T
Q  277 atgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattact 376  Q
    |||||||||||||| ||||||  ||||||| ||| ||||||||||| |||||| ||||||||||||| |||||||||||||||||||||  | |||||||    
T  36176462 atgacttttgcactaaaccgcatggttcgggttggtttgcggtttgcatctcagcaaccgaaccaaatcaaaccaaaccgcaagaataatgactattact 36176561  T
Q  377 taaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatt 431  Q
    ||||| ||||||||||||||||||||||  ||||| |||||||||| ||||||||    
T  36176562 taaacgtgtactagcccaattacatagctcaagaaaaatctcttttgattcgatt 36176616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 176 - 478
Target Start/End: Complemental strand, 10174665 - 10174371
Alignment:
Q  176 ttaggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttg 275  Q
    ||||||||||| |||||| || |||  ||| ||||||| || |||| |||  |||| ||| ||| |||  |||||| |||||||| ||  |||||||| |    
T  10174665 ttaggggtgttcaaaaccgaaccaacccaatagaaaaaccgcaaaccaaaccaatccaaaccgaaaccacaaaaaaccgcacttgattcggatgaattcg 10174566  T
Q  276 gatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattac 375  Q
    ||||||||||||||||||||||| |||| | || ||||||||||||| |||||| |||||||||||||||||||||||||||||    ||  ||||||||    
T  10174565 gatgacttttgcactgaaccgcgcggtttg-ttcgatttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaa----aatgaatattac 10174471  T
Q  376 ttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccat 475  Q
    |||||| ||||||| |||||||||||| |  |||   |||||||||| ||||||||||| |||||||| ||||||| |||||||| |||||| ||| |||    
T  10174470 ttaaacatgtactatcccaattacataactcaag---aatctcttttgattcgattttttcattgttgcaccatcaggttcgattataattcattttcat 10174374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 207 - 538
Target Start/End: Original strand, 36176623 - 36176934
Alignment:
Q  207 agaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcgg 306  Q
    ||||||| || |||| |||  |||| ||| ||| |||| |||||| |||||||||||   ||||||| |||||||||||||||| ||||||  |||||||    
T  36176623 agaaaaaccgcaaaccaaaccaatccaaaccgaaaccgcaaaaaaccgcacttggttcgaatgaattcggatgacttttgcactaaaccgcatggttcgg 36176722  T
Q  307 tttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcct 406  Q
     ||| ||||||||||| |||||| ||||||||||||| |||||||||||||||||||||  | |||||||||||| ||||||||||||||||||||||      
T  36176723 gttggtttgcggtttgcatctcagcaaccgaaccaaatcaaaccaaaccgcaagaataatgactattacttaaacgtgtactagcccaattacatagctc 36176822  T
Q  407 aagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccatctcctttaattcatttccaatgatgaattta 506  Q
    ||||| |||                    || ||||| ||||||| |||| ||||||||||||||||||||| ||  ||||||||||||||||||||||     
T  36176823 aagaaaaat--------------------cactgttgcaccatcaggttcaattctaattcctttccatctctttcgattcatttccaatgatgaatttg 36176902  T
Q  507 ttttcttttcttcccaataatttgtttcatgc 538  Q
    ||| |||| ||| ||||||||| |||||||||    
T  36176903 tttcctttactttccaataattagtttcatgc 36176934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 368 - 534
Target Start/End: Complemental strand, 35893405 - 35893238
Alignment:
Q  368 aatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattc 467  Q
    |||||||||||||| ||||||||||||||||||||||  |||||||||||||||  ||| ||||||| |||||||| ||||||||| |||||||||||||    
T  35893405 aatattacttaaacatgtactagcccaattacatagctcaagaataatctctttcgatttgattttttcattgttgcaccatcacgctcgattctaattc 35893306  T
Q  468 c-tttccatctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttc 534  Q
    | |||||||||  || |||||||||||| |||||||||| ||| |||| |||||||||||||||||||    
T  35893305 cttttccatctttttcaattcatttccagtgatgaatttgtttcctttacttcccaataatttgtttc 35893238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 342 - 535
Target Start/End: Original strand, 17084513 - 17084706
Alignment:
Q  342 aaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgt 441  Q
    |||| |||||||||||||||||||  |||||||||||||||||||||| ||||||||||||  | || |||||||| |||| |||||||||||||||| |    
T  17084513 aaccgaaccaaaccgcaagaataatcaatattacttaaacttgtactaacccaattacataatccaaaaataatctattttgattcgatttttccattat 17084612  T
Q  442 tgtaccatcacgttcgattctaattcctttccatctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttca 535  Q
    || ||||||| |||||| |||| ||  ||| ||||||||| |||  |||| || |||||||||| ||| ||||||| ||||||||||| |||||    
T  17084613 tgcaccatcaagttcgaatctatttgtttttcatctccttcaatcaattttcagtgatgaatttgtttccttttctccccaataatttatttca 17084706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 414 - 543
Target Start/End: Original strand, 38334674 - 38334803
Alignment:
Q  414 atctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccatctcctttaattcatttccaatgatgaatttattttctt 513  Q
    ||||| |||||||||||||| ||||||||| | ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||  ||    
T  38334674 atctcctttaattcgattttcccattgttgcatcatcaggttcgattctaattcctttccatctccttcaattcatttccaatgatgaatttgtttcatt 38334773  T
Q  514 ttcttcccaataatttgtttcatgcctatg 543  Q
    ||||||||||||||||| ||||||| ||||    
T  38334774 ttcttcccaataatttgattcatgcttatg 38334803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 228 - 543
Target Start/End: Complemental strand, 23781263 - 23780977
Alignment:
Q  228 aatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatct 327  Q
    |||| ||| ||| |||| |||||| ||||||||| |  ||||| ||  ||||||||||||||||||| ||| |||||||||       ||||||| ||||    
T  23781263 aatccaaaccgaaaccgcaaaaaaccgcacttggatcggatgatttcagatgacttttgcactgaactgcgcggttcggtt-------cggtttgcatct 23781171  T
Q  328 caacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattc 427  Q
    || |||| ||||||| |||||||||||||||| |||||  ||||||                 ||||||||| ||||  |||||||||||||||| |||     
T  23781170 cagcaactgaaccaagccaaaccaaaccgcaaaaataatgaatatt-----------------cccaattacttagctcaagaataatctcttttgattt 23781088  T
Q  428 gatttttccattgttgtaccatcacgttcgattctaattcctttccatctcctttaattcatttccaatgatgaatttattttcttttcttcccaataat 527  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||| || |||||||||||     ||||||| ||| |||| ||||||||||||    
T  23781087 gatttttccattgttgtaccatcgggttcgattctaattcctttccatctctttcaattcatttcc-----tgaatttgtttcctttacttcccaataat 23780993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 228 - 543
Target Start/End: Complemental strand, 23868216 - 23867930
Alignment:
Q  228 aatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatct 327  Q
    |||| ||| ||| |||| |||||| ||||||||| |  ||||| ||  ||||||||||||||||||| ||| |||||||||       ||||||| ||||    
T  23868216 aatccaaaccgaaaccgcaaaaaaccgcacttggatcggatgatttcagatgacttttgcactgaactgcgcggttcggtt-------cggtttgcatct 23868124  T
Q  328 caacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattc 427  Q
    || |||| ||||||| |||||||||||||||| |||||  ||||||                 ||||||||| ||||  |||||||||||||||| |||     
T  23868123 cagcaactgaaccaagccaaaccaaaccgcaaaaataatgaatatt-----------------cccaattacttagctcaagaataatctcttttgattt 23868041  T
Q  428 gatttttccattgttgtaccatcacgttcgattctaattcctttccatctcctttaattcatttccaatgatgaatttattttcttttcttcccaataat 527  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||| || |||||||||||     ||||||| ||| |||| ||||||||||||    
T  23868040 gatttttccattgttgtaccatcgggttcgattctaattcctttccatctctttcaattcatttcc-----tgaatttgtttcctttacttcccaataat 23867946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 177 - 364
Target Start/End: Complemental strand, 15069012 - 15068825
Alignment:
Q  177 taggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttgg 276  Q
    |||||||||| ||||||||| |||  ||| ||||||| || ||||  ||  || | ||||||| |||| |||||| |||||||||||  ||||| || ||    
T  15069012 taggggtgttcaaaaccaaaccaacccaatagaaaaaccgcaaaccgaaccaacccaaatcgaaaccgcaaaaaaccgcacttggttcggatgagttcgg 15068913  T
Q  277 atgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 364  Q
    |||||||||  ||||||||||| ||||||||| | ||||||||||| |||||||||||| ||||||||||||||||||||||| ||||    
T  15068912 atgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcaacaaccaaaccaaaccaaaccaaaccgcaaaaata 15068825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 209 - 346
Target Start/End: Complemental strand, 42545959 - 42545822
Alignment:
Q  209 aaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtt 308  Q
    ||||| ||||||| |||  |||| ||||||| |||| ||||||| ||||||||||  ||||||||  ||||||||||||||| ||||||| |||||||||    
T  42545959 aaaaaccgtaaaccaaaccaatccaaatcgaaaccgcaaaaaattgcacttggttcggatgaattcagatgacttttgcactaaaccgcgcggttcggtt 42545860  T
Q  309 tgatttgcggtttgtatctcaacaaccgaaccaaacca 346  Q
     | ||||||||||| |||||||||||||||||||||||    
T  42545859 cggtttgcggtttgcatctcaacaaccgaaccaaacca 42545822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 228 - 364
Target Start/End: Complemental strand, 11917940 - 11917804
Alignment:
Q  228 aatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatct 327  Q
    |||| ||| ||| |||| |||||| |||||||||||| ||||| || |||||||||||  ||| ||||||| ||||||||| | ||||||||||| ||||    
T  11917940 aatccaaaccgaaaccgcaaaaaaccgcacttggtttggatgagttcggatgacttttagactaaaccgcgcggttcggttcggtttgcggtttgcatct 11917841  T
Q  328 caacaaccgaaccaaaccaaaccaaaccgcaagaata 364  Q
    || ||||||||||||||||||||||||||||| ||||    
T  11917840 cagcaaccgaaccaaaccaaaccaaaccgcaaaaata 11917804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 241 - 364
Target Start/End: Original strand, 666869 - 666992
Alignment:
Q  241 accgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaacc 340  Q
    |||| |||||| |||||||||||  ||||| || |||||||||||  ||||||||||| ||||||||| | ||||||||||| |||||| ||||||||||    
T  666869 accgcaaaaaaccgcacttggttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaacc 666968  T
Q  341 aaaccaaaccaaaccgcaagaata 364  Q
    ||||||||||||||||||| ||||    
T  666969 aaaccaaaccaaaccgcaaaaata 666992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 241 - 364
Target Start/End: Original strand, 27885684 - 27885807
Alignment:
Q  241 accgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaacc 340  Q
    |||| |||||| |||||||||||  ||||| || |||||||||||  ||||||||||| ||||||||| | ||||||||||| |||||| ||||||||||    
T  27885684 accgcaaaaaaccgcacttggttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaacc 27885783  T
Q  341 aaaccaaaccaaaccgcaagaata 364  Q
    ||||||||||||||||||| ||||    
T  27885784 aaaccaaaccaaaccgcaaaaata 27885807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 233 - 364
Target Start/End: Original strand, 38334344 - 38334475
Alignment:
Q  233 aaatcgataccgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaaca 332  Q
    ||||||| |||| |||||| |||||||||||  ||||| || |||||||||||  ||||||||||| ||||||||| | ||||||||||| |||||| ||    
T  38334344 aaatcgaaaccgcaaaaaaccgcacttggttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagca 38334443  T
Q  333 accgaaccaaaccaaaccaaaccgcaagaata 364  Q
    |||||||||||| |||||||||||||| ||||    
T  38334444 accgaaccaaactaaaccaaaccgcaaaaata 38334475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 401 - 537
Target Start/End: Original strand, 9988586 - 9988722
Alignment:
Q  401 tagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccatctcctttaattcatttccaatgatg 500  Q
    ||||| ||||| |||||||||| |||| |||||| |||| ||| |||||||  ||||||| |||||||||| ||||||||| |||||||||| | |||||    
T  9988586 tagcccaagaacaatctcttttgattcaattttttcattcttgcaccatcagattcgattttaattccttttcatctccttcaattcatttctagtgatg 9988685  T
Q  501 aatttattttcttttcttcccaataatttgtttcatg 537  Q
    ||||| ||| |||||||| | ||||||||||||||||    
T  9988686 aatttgtttccttttctttcaaataatttgtttcatg 9988722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 241 - 364
Target Start/End: Complemental strand, 701689 - 701566
Alignment:
Q  241 accgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaacc 340  Q
    |||| |||||| |||||||||||  ||||| ||||||||||||||  ||| ||||||  ||||||||| | ||||||||||| |||||| ||||||||||    
T  701689 accgcaaaaaaccgcacttggttcggatgagtttggatgacttttagactaaaccgcacggttcggttcggtttgcggtttgcatctcagcaaccgaacc 701590  T
Q  341 aaaccaaaccaaaccgcaagaata 364  Q
    ||||||||||||||||||| ||||    
T  701589 aaaccaaaccaaaccgcaaaaata 701566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 241 - 364
Target Start/End: Complemental strand, 8409458 - 8409335
Alignment:
Q  241 accgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaacc 340  Q
    |||| |||||| |||||||||||  ||||| || |||||||||||  |||||| |||| ||||||||| | ||||||||||| |||||| ||||||||||    
T  8409458 accgcaaaaaaccgcacttggttcggatgagttcggatgacttttagactgaatcgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaacc 8409359  T
Q  341 aaaccaaaccaaaccgcaagaata 364  Q
    ||||||||||||||||||| ||||    
T  8409358 aaaccaaaccaaaccgcaaaaata 8409335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 241 - 364
Target Start/End: Complemental strand, 30002470 - 30002347
Alignment:
Q  241 accgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaacc 340  Q
    |||| |||||| |||||||||||  ||||| || |||||| ||||  ||||||||||| ||||||||| | ||||||||||  |||||| ||||||||||    
T  30002470 accgcaaaaaaccgcacttggttcggatgagttcggatgatttttagactgaaccgcgcggttcggttcggtttgcggtttacatctcagcaaccgaacc 30002371  T
Q  341 aaaccaaaccaaaccgcaagaata 364  Q
    ||||||||||||||||||| ||||    
T  30002370 aaaccaaaccaaaccgcaaaaata 30002347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 356 - 538
Target Start/End: Complemental strand, 42545086 - 42544902
Alignment:
Q  356 gcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgtt 455  Q
    ||||||||||  |||||||||||||  |||| ||||||||| |||||||  |||||||||||  ||| |||| | || | |||||||| ||||| | | |    
T  42545086 gcaagaataatgaatattacttaaatatgtaatagcccaataacatagctcaagaataatctaatttgattcaacttgttcattgttgcaccataaggct 42544987  T
Q  456 cgattctaattcctttccatctccttta--attcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgc 538  Q
     |||| |||||| |||||||||| || |  ||||||||||| |||||||||| ||| |||| |||| ||||||||| ||||||||    
T  42544986 tgattttaattcttttccatctctttcaatattcatttccagtgatgaatttgtttcctttacttctcaataatttatttcatgc 42544902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 181 - 345
Target Start/End: Complemental strand, 35359623 - 35359464
Alignment:
Q  181 ggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttggatga 280  Q
    ||||||||||| | || |||  ||| ||| ||||||||||||||| ||||  ||||||| |||| |||||| ||||||||||   |||||||| ||||||    
T  35359623 ggtgtttaaaatcgaaccaacccaatagataaatcgtaaactaaactaattcaaatcgaaaccgcaaaaaaccgcacttggtgcggatgaattcggatga 35359524  T
Q  281 cttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaacc 345  Q
     |||||||||||||      || ||||| ||||||||||||| ||||||| |||| |||||||||    
T  35359523 tttttgcactgaac-----agtgcggttcgatttgcggtttgcatctcaaaaaccaaaccaaacc 35359464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 176 - 365
Target Start/End: Complemental strand, 35893626 - 35893443
Alignment:
Q  176 ttaggggtgtttaaaaccaaatcaagtcaacagaaaaatc-gtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaattt 274  Q
    ||||||||||||||||||||| |||  ||| | ||||| | |||||  |||  |||  ||||||| |||| |||||| |||||||||||  ||||||||     
T  35893626 ttaggggtgtttaaaaccaaaccaatccaataaaaaaaaccgtaaatcaaaccaattcaaatcgaaaccgcaaaaaaccgcacttggttcggatgaattc 35893527  T
Q  275 ggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 365  Q
    |||||||||||| |||||| |||| ||| ||||| |||||||       |||||||||| | |  ||||||||||||||||||||||||||    
T  35893526 ggatgacttttgtactgaatcgcgcggtccggttcgatttgc-------atctcaacaatcaagtcaaaccaaaccaaaccgcaagaataa 35893443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 300 - 359
Target Start/End: Original strand, 691167 - 691226
Alignment:
Q  300 ggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaa 359  Q
    |||| |||||||||||||||||  || | | |||||||||||||||||||||||||||||    
T  691167 ggtttggtttgatttgcggttttcattttaccaaccgaaccaaaccaaaccaaaccgcaa 691226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 350
Target Start/End: Complemental strand, 2423453 - 2423279
Alignment:
Q  176 ttaggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttg 275  Q
    ||||||||||| |||| | || |||  ||| |||||||| | ||||| ||| || | ||||||| |||  |||||| |||| || |||| |||| ||||     
T  2423453 ttaggggtgttcaaaagcgaaccaatccaatagaaaaattgcaaactgaatcaacccaaatcgaaaccacaaaaaaccgcattttgtttggatgtatttt 2423354  T
Q  276 gatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaacc 350  Q
    ||| |||||| | || |||| |  |||| |||||||||||||||||  || | | ||||||||||||||||||||    
T  2423353 gatcactttttccctcaaccacatggtttggtttgatttgcggttttcattttaccaaccgaaccaaaccaaacc 2423279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 395
Target Start/End: Original strand, 9988538 - 9988593
Alignment:
Q  337 aaccaaaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaa 395  Q
    ||||||||||||||||||||||| ||| |   |||||| ||||||||||||||||||||    
T  9988538 aaccaaaccaaaccaaaccgcaataatca---atattatttaaacttgtactagcccaa 9988593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 288
Target Start/End: Original strand, 9988409 - 9988520
Alignment:
Q  177 taggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttgg 276  Q
    |||| ||||| |||||| || |||  ||| |||||||  |||||| |||  ||| |||| ||| | |||||||||| ||| ||||||  |||||||||||    
T  9988409 taggagtgttcaaaaccgaaccaatccaatagaaaaactgtaaaccaaaccaatttaaaccgaaatcgtaaaaaattgcatttggttcggatgaatttgg 9988508  T
Q  277 atgacttttgca 288  Q
    ||||||||||||    
T  9988509 atgacttttgca 9988520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 305 - 359
Target Start/End: Complemental strand, 18432610 - 18432556
Alignment:
Q  305 ggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaa 359  Q
    |||||| |||||||||| ||| | | ||||||||||||| |||||||||||||||    
T  18432610 ggtttggtttgcggtttttattttatcaaccgaaccaaatcaaaccaaaccgcaa 18432556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 245 - 359
Target Start/End: Complemental strand, 23623583 - 23623469
Alignment:
Q  245 taaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaac 344  Q
    ||||||| |||| || |||| || | ||| |||| ||||||  ||| ||||||  |||| |||||| ||||||||||  || | |  |||||||||||||    
T  23623583 taaaaaaccgcatttagtttggaagtattcggatcacttttttactcaaccgcatggtttggtttggtttgcggttttcatttgacaaaccgaaccaaac 23623484  T
Q  345 caaaccaaaccgcaa 359  Q
    |||||||||||||||    
T  23623483 caaaccaaaccgcaa 23623469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 331 - 361
Target Start/End: Original strand, 27571668 - 27571698
Alignment:
Q  331 caaccgaaccaaaccaaaccaaaccgcaaga 361  Q
    |||||||||||||||||||||||||||||||    
T  27571668 caaccgaaccaaaccaaaccaaaccgcaaga 27571698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 207 - 543
Target Start/End: Complemental strand, 30392659 - 30392324
Alignment:
Q  207 agaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcgg 306  Q
    |||||||||||||| |||| ||||  || |||| ||||||||||| |||||||||||| |||||||| |||||||||||  ||||||||||| |||| ||    
T  30392659 agaaaaatcgtaaattaaactaattcaattcgaaaccgtaaaaaaccgcacttggtttggatgaattcggatgacttttttactgaaccgcgcggtttgg 30392560  T
Q  307 tttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcct 406  Q
    ||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||     
T  30392559 ttcagtttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatagccc 30392460  T
Q  407 aagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccatctcctttaattcatttccaatgatgaattta 506  Q
    || ||||||||||||| ||||||||||||||||| || || || | ||| |||||||||||||||||||||| ||||||||||||||| ||||||||||     
T  30392459 aacaataatctcttttgattcgatttttccattgctgcactatgaggtttgattctaattcctttccatctcttttaattcatttccagtgatgaatttg 30392360  T
Q  507 ttttcttttcttcccaataatttgtttcatgcctatg 543  Q
    ||| |||||||| ||||||||||||||||||| ||||    
T  30392359 tttccttttctt-ccaataatttgtttcatgcttatg 30392324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 176 - 536
Target Start/End: Complemental strand, 14549834 - 14549478
Alignment:
Q  176 ttaggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttg 275  Q
    |||| ||||||||||||| || |||  ||| |||||||  |||||| |||  |||| ||| ||| |||| ||||||||||||||||||  |||||||| |    
T  14549834 ttagaggtgtttaaaaccgaaccaacccaatagaaaaactgtaaaccaaaccaatccaaaccgaaaccgcaaaaaatcgcacttggttcggatgaattcg 14549735  T
Q  276 gatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattac 375  Q
    ||||||||||||||||||||||| ||||||||| | ||||||||||| |||||| || |||||||||||||||||     | ||||||||  ||||||||    
T  14549734 gatgacttttgcactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcatccgaaccaaaccaaacc-----gtaagaataatgaatattac 14549640  T
Q  376 ttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccat 475  Q
    |||||| ||||||||||||||||||||||  |||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||| |||||||||||    
T  14549639 ttaaacatgtactagcccaattacatagctcaagaataatctcttttgattcgaattttccattgttgtaccatcaggttcgattctatttcctttccat 14549540  T
Q  476 ctcctttaattcatttccaatgatgaatttattttcttttcttccc-aataatttgtttcat 536  Q
    ||| || |||| |||| || |||||||||| ||| |||| |||||| ||||| |||||||||    
T  14549539 ctctttcaattaattttcagtgatgaatttgtttcctttacttcccaaataaattgtttcat 14549478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 246 - 543
Target Start/End: Original strand, 36827334 - 36827631
Alignment:
Q  246 aaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaacc 345  Q
    ||||||||||||||||||  | |||||| | ||||||||||||||||||| |  |||| |||| | ||||||||||| |||||| || ||||||||||||    
T  36827334 aaaaaatcgcacttggttcggctgaattcgaatgacttttgcactgaaccacacggtttggttcggtttgcggtttgcatctcagcagccgaaccaaacc 36827433  T
Q  346 aaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgta 445  Q
    ||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||  |||| ||||||||||  |||| ||||||||||||||| |    
T  36827434 aaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagattaatctctttcgattcaatttttccattgttgca 36827533  T
Q  446 ccatcacgttcgattctaattcctttccatctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgcctatg 543  Q
    |||||| |||||||||||||| ||||||||||| || |||| |||||||  ||||||||| |||  ||| ||||||||||||||||||||||| ||||    
T  36827534 ccatcaggttcgattctaatttctttccatctctttcaatttatttccaccgatgaatttgtttcttttacttcccaataatttgtttcatgcttatg 36827631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 253 - 535
Target Start/End: Complemental strand, 33069121 - 33068844
Alignment:
Q  253 cgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaa 352  Q
    |||||||||||| ||||| || ||||||||||||||||||||| ||     ||||||||||||||||||| |||| | |||||||||||||| |||||||    
T  33069121 cgcacttggtttggatgatttcggatgacttttgcactgaaccacg-----cggtttgatttgcggtttgcatcttagcaaccgaaccaaacgaaaccaa 33069027  T
Q  353 accgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcac 452  Q
    ||| ||| |||||  ||||||||||||| |||||| |||||||||||||| |  |||||||||||||||| ||| |||||||||||||||| |||||||     
T  33069026 accacaaaaataatcaatattacttaaatttgtaccagcccaattacataactcaagaataatctcttttgatttgatttttccattgttgcaccatcaa 33068927  T
Q  453 gttcgattctaattcctttccatctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttca 535  Q
     |||||||||||||||||| ||| ||||| ||||||||| || |||||||||||||| |||||||||||||||||||||||||    
T  33068926 attcgattctaattccttttcatttccttcaattcattttcagtgatgaatttatttccttttcttcccaataatttgtttca 33068844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 177 - 543
Target Start/End: Original strand, 18169505 - 18169865
Alignment:
Q  177 taggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttgg 276  Q
    |||||||||| ||||||||| |||   || | |||||||| |||| |||  |||| ||| ||| | || ||||||||||| ||||||  ||||| || ||    
T  18169505 taggggtgttcaaaaccaaaccaaccaaataaaaaaatcgcaaacaaaaccaatccaaaccgaaaacgcaaaaaatcgcagttggttcggatga-ttcgg 18169603  T
Q  277 atgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattact 376  Q
    || ||||||||||||||||||| ||||||||||| ||||||||||| |||||  || |||||||||| |||||      ||||||||||  |||||||||    
T  18169604 attacttttgcactgaaccgcgtggttcggtttggtttgcggtttgcatctcggcagccgaaccaaatcaaact-----gcaagaataatgaatattact 18169698  T
Q  377 taaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccatc 476  Q
    ||||| |||||||||||||||||||| |  ||||||||||||| |  |||||||||||||||| ||| ||||||| ||| ||||||||||||||||||||    
T  18169699 taaacatgtactagcccaattacatacctcaagaataatctctatcgattcgatttttccattattgcaccatcaggtttgattctaattcctttccatc 18169798  T
Q  477 tcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgcctatg 543  Q
    || || |||||||||||| |||||||||| ||| |||| ||| | ||||||||||||||||| ||||    
T  18169799 tctttcaattcatttccagtgatgaatttgtttcctttacttgcaaataatttgtttcatgcttatg 18169865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 177 - 543
Target Start/End: Original strand, 18633071 - 18633431
Alignment:
Q  177 taggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttgg 276  Q
    |||||||||| ||||||||| |||   || | |||||||| |||| |||  |||| ||| ||| | || ||||||||||| ||||||  ||||| || ||    
T  18633071 taggggtgttcaaaaccaaaccaaccaaataaaaaaatcgcaaacaaaaccaatccaaaccgaaaacgcaaaaaatcgcagttggttcggatga-ttcgg 18633169  T
Q  277 atgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattact 376  Q
    || ||||||||||||||||||| ||||||||||| ||||||||||| |||||  || |||||||||| |||||      ||||||||||  |||||||||    
T  18633170 attacttttgcactgaaccgcgtggttcggtttggtttgcggtttgcatctcggcagccgaaccaaatcaaact-----gcaagaataatgaatattact 18633264  T
Q  377 taaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccatc 476  Q
    ||||| |||||||||||||||||||| |  ||||||||||||| |  |||||||||||||||| ||| ||||||| ||| ||||||||||||||||||||    
T  18633265 taaacatgtactagcccaattacatacctcaagaataatctctatcgattcgatttttccattattgcaccatcaggtttgattctaattcctttccatc 18633364  T
Q  477 tcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgcctatg 543  Q
    || || |||||||||||| |||||||||| ||| |||| ||| | ||||||||||||||||| ||||    
T  18633365 tctttcaattcatttccagtgatgaatttgtttcctttacttgcaaataatttgtttcatgcttatg 18633431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 276 - 543
Target Start/End: Complemental strand, 10661658 - 10661392
Alignment:
Q  276 gatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattac 375  Q
    |||||||||||||||||||| || |||| |||||| |||||| |||| |||||| ||||| ||| |||||||||||||||||||| ||||  |||||  |    
T  10661658 gatgacttttgcactgaaccacgcggtttggtttggtttgcg-tttgcatctcagcaaccaaactaaaccaaaccaaaccgcaaggataatgaatatatc 10661560  T
Q  376 ttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccat 475  Q
    |||||| ||||||||||| ||||||||||  |||||| |||| |||| ||||||||||| |||||||||||||||| ||||||||||||||| ||||||     
T  10661559 ttaaacatgtactagcccgattacatagctcaagaattatcttttttgattcgattttttcattgttgtaccatcatgttcgattctaattcatttccaa 10661460  T
Q  476 ctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgcctatg 543  Q
    ||| || |||||||||||| ||| |||||| ||| |||| ||||||||||||||||||||||| ||||    
T  10661459 ctctttcaattcatttccagtgaagaatttgtttcctttacttcccaataatttgtttcatgcttatg 10661392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 228 - 537
Target Start/End: Complemental strand, 3682472 - 3682169
Alignment:
Q  228 aatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatct 327  Q
    |||| ||||| | |||| |||||| ||||||||||| | ||||| | ||||||||||| |||||||||||| |||| |||||| ||||||||||| ||||    
T  3682472 aatccaaatcaaaaccgcaaaaaaccgcacttggttcaaatgaaatcggatgacttttccactgaaccgcgcggtttggtttggtttgcggtttgcatct 3682373  T
Q  328 caacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattc 427  Q
    || ||||||||||||||||||||     ||||||||||  |||||||| ||||| |||||||||||||||||||| ||||||||||||||||||| ||||    
T  3682372 cagcaaccgaaccaaaccaaacc-----gcaagaataatgaatattacctaaacatgtactagcccaattacataacctaagaataatctcttttgattc 3682278  T
Q  428 gatttttccattgttgtaccatcacgttcgattctaattcctttccatctcctttaattcatttccaatgatgaatttattttcttttcttcccaataat 527  Q
     ||||||||||| ||  ||||||| |||| ||||||||| ||| ||||||  || |||||| ||||| ||| |||||| |||  |||||||||||||||     
T  3682277 aatttttccatttttccaccatcaggttcaattctaatttcttaccatctatttcaattca-ttccactgacgaatttgtttcattttcttcccaataac 3682179  T
Q  528 ttgtttcatg 537  Q
    ||||||||||    
T  3682178 ttgtttcatg 3682169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 246 - 402
Target Start/End: Complemental strand, 44673265 - 44673109
Alignment:
Q  246 aaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaacc 345  Q
    |||||| || ||||||||  |||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| |||||||||||||||    
T  44673265 aaaaaaccgtacttggttcggatgaattcggatgacttttgcactgaaccgcgcggttcggtttggtttgcggtttgcatctcagcaaccgaaccaaacc 44673166  T
Q  346 aaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacata 402  Q
    ||||||||| ||||||||||  |||||||||||||| ||||||||||||||||||||    
T  44673165 aaaccaaactgcaagaataatgaatattacttaaacatgtactagcccaattacata 44673109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 223 - 443
Target Start/End: Original strand, 6200455 - 6200675
Alignment:
Q  223 aaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttg 322  Q
    |||| |||| ||||||| |||| ||||||  ||| ||||||  |||||||| ||||||||||||||||||| || | ||||  ||| | |||  ||||||    
T  6200455 aaatcaatccaaatcgaaaccgcaaaaaactgcatttggttcggatgaattcggatgacttttgcactgaatcgtgcggtttcgttcggtttttggtttg 6200554  T
Q  323 tatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctctttt 422  Q
     |||| | ||||| |||||||||||||||||||||||||||||  ||||||||| |||| |||||||||||||||||||| || ||||||||||||||||    
T  6200555 catcttagcaaccaaaccaaaccaaaccaaaccgcaagaataatgaatattactgaaacatgtactagcccaattacataacccaagaataatctctttt 6200654  T
Q  423 aattcgatttttccattgttg 443  Q
     ||||||||||||||||||||    
T  6200655 gattcgatttttccattgttg 6200675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 266 - 537
Target Start/End: Original strand, 36909910 - 36910165
Alignment:
Q  266 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 365  Q
    ||||||||| || |||||||||| ||||| ||| ||||||||| | ||||||||||| ||||||  |||||||||| ||||||||     ||||||||||    
T  36909910 gatgaatttagacgacttttgcattgaactgcgcggttcggttcggtttgcggtttgcatctcaggaaccgaaccataccaaacc-----gcaagaataa 36910004  T
Q  366 gaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaat 465  Q
      |||||          ||||||||||||||||||| ||  ||||||||||| |||| |||| ||||||||||||||| ||||||| ||| |||||||||    
T  36910005 tgaatata---------tgtactagcccaattacat-gctcaagaataatct-ttttgattccatttttccattgttgcaccatcaggtttgattctaat 36910093  T
Q  466 tcctttccatctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatg 537  Q
    || |||||||||| || ||||||||| |  |||||||||||||| |||| ||||||||||||||||||||||    
T  36910094 tcatttccatctctttcaattcattttcggtgatgaatttatttcctttacttcccaataatttgtttcatg 36910165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 253 - 350
Target Start/End: Original strand, 5802505 - 5802602
Alignment:
Q  253 cgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaacc 350  Q
    |||||||||||  ||||| ||  ||||||||||  ||||||||||| ||||||||| | ||||||||||| |||||| ||||| ||||||||||||||    
T  5802505 cgcacttggttcggatgagttcagatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccaaaccaaaccaaacc 5802602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 253 - 355
Target Start/End: Original strand, 3006186 - 3006283
Alignment:
Q  253 cgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaa 352  Q
    |||||||||||  ||||| || |||| ||||||  ||||||||||| |||||||||||     ||||||| |||||| ||||||||||||||||||||||    
T  3006186 cgcacttggttcggatgagttcggattacttttagactgaaccgcgcggttcggtttg-----cggtttgcatctcagcaaccgaaccaaaccaaaccaa 3006280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 266 - 350
Target Start/End: Original strand, 42496462 - 42496546
Alignment:
Q  266 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaacc 350  Q
    |||||||||| |||| ||||||||||||||||  ||||||||| |||||| | ||| ||||| ||||| ||||||||| ||||||    
T  42496462 gatgaatttgaatgatttttgcactgaaccgcacggttcggttcgatttgtgatttatatcttaacaatcgaaccaaatcaaacc 42496546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 355
Target Start/End: Complemental strand, 19539729 - 19539686
Alignment:
Q  312 tttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaacc 355  Q
    |||||||||| ||||| | |||||||||||||||||||||||||    
T  19539729 tttgcggtttttatcttatcaaccgaaccaaaccaaaccaaacc 19539686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 359
Target Start/End: Complemental strand, 1271628 - 1271600
Alignment:
Q  331 caaccgaaccaaaccaaaccaaaccgcaa 359  Q
    |||||||||||||||||||||||||||||    
T  1271628 caaccgaaccaaaccaaaccaaaccgcaa 1271600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 246 - 538
Target Start/End: Original strand, 6003935 - 6004227
Alignment:
Q  246 aaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaacc 345  Q
    |||||| | |||||||||  |||||||| ||||||||||||||||||||||||||||| |||| | ||||||||||| |||||| | |||||||||||||    
T  6003935 aaaaaaccacacttggttcggatgaattcggatgacttttgcactgaaccgcgaggtttggttcggtttgcggtttgcatctcagctaccgaaccaaacc 6004034  T
Q  346 aaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgta 445  Q
    ||||||||||||||||||||  ||| |||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |    
T  6004035 aaaccaaaccgcaagaataatgaatgttacttaaacatgtactagcccaattacatagcccaagaataatctcttttgattcgatttttccattgttgca 6004134  T
Q  446 ccatcacgttcgattctaattcctttccatctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgc 538  Q
    |||||| |||| ||||||||||||||||||||| ||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||    
T  6004135 ccatcaggttcaattctaattcctttccatctcttttaattcatttccagtgatgaatttgtttccttttcttcccaataatttgtttcatgc 6004227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 232 - 538
Target Start/End: Original strand, 35531690 - 35531991
Alignment:
Q  232 taaatcgataccgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaac 331  Q
    |||| ||| |||| ||||||| ||||||||||  ||||||||  | ||||||||||||||||||||  ||||| ||| ||||||| ||||| |||||| |    
T  35531690 taaaccgaaaccgcaaaaaattgcacttggttcggatgaattcaggtgacttttgcactgaaccgcacggttcagttcgatttgcagtttgcatctcagc 35531789  T
Q  332 aaccgaaccaaaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatt 431  Q
    |||||||||     ||||||||||||||||||||  |||||||||||||| ||||||||||||||| ||||||  ||||||||||  |||| ||||||||    
T  35531790 aaccgaacc-----aaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattgcatagctcaagaataatcgttttttattcgatt 35531884  T
Q  432 tttccattgttgtaccatcacgttcgattctaattcctttccatctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgt 531  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||| || |||||||||||  | |||||| | ||| |||| ||||||||||||||||    
T  35531885 tttccattgttgcaccatcatgttcgattctaattcctttccatctctttcaattcatttccgtttatgaatgtgtttcctttacttcccaataatttgt 35531984  T
Q  532 ttcatgc 538  Q
    |||||||    
T  35531985 ttcatgc 35531991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 254 - 543
Target Start/End: Original strand, 21586402 - 21586685
Alignment:
Q  254 gcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaa 353  Q
    ||||||||||  ||||||||||||||||||||||||| ||||||| |||||||||||     | ||||| |||||| ||||||||||||||||| |||||    
T  21586402 gcacttggttcggatgaatttggatgacttttgcactaaaccgcgcggttcggtttg-----cagtttgcatctcagcaaccgaaccaaaccaa-ccaaa 21586495  T
Q  354 ccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacg 453  Q
     |||||||||||  |||||||||||||| |||||||||| ||||||||||   ||||||||| |||||  |||||||||||||||||||| ||||| | |    
T  21586496 tcgcaagaataatgaatattacttaaacatgtactagccaaattacatagttcaagaataatatctttcgattcgatttttccattgttgcaccatgagg 21586595  T
Q  454 ttcgattctaattcctttccatctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgcctatg 543  Q
    ||||||||||||||||||||||||| || |||||||||||  |||||||||| ||| ||||  ||| || ||||||||||||||| ||||    
T  21586596 ttcgattctaattcctttccatctctttcaattcatttccggtgatgaatttgtttcctttatttctcagtaatttgtttcatgcttatg 21586685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 346 - 543
Target Start/End: Original strand, 50562223 - 50562420
Alignment:
Q  346 aaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgta 445  Q
    |||||||||| |||||||||  |||||||||||||| ||||||||||||||||||||||  |||||||||||||||  |||||||||||||||||||| |    
T  50562223 aaaccaaaccccaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctctttcgattcgatttttccattgttgca 50562322  T
Q  446 ccatcacgttcgattctaattcctttccatctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgcctatg 543  Q
    |||||| |||||||||||||||||||||||||| || |||| |||| || |||||||||| |||  ||| ||||| ||||||||||||||||| ||||    
T  50562323 ccatcaggttcgattctaattcctttccatctctttcaatttattttcagtgatgaatttgtttcatttacttccaaataatttgtttcatgcttatg 50562420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 275 - 494
Target Start/End: Complemental strand, 32880813 - 32880599
Alignment:
Q  275 ggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatatta 374  Q
    ||||||||||||||||||||||||  |||||||||| ||| ||||||| |||||| ||||||||||||||||||||     ||||||| ||  |||||||    
T  32880813 ggatgacttttgcactgaaccgcgcagttcggtttggtttacggtttgcatctcagcaaccgaaccaaaccaaacc-----gcaagaaaaatgaatatta 32880719  T
Q  375 cttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttcca 474  Q
    ||||||| |||||||| |||||||||||||  |||  ||||||||||  ||| |||||||||||||||| ||||||| ||| ||||||||||||||||||    
T  32880718 cttaaacatgtactagtccaattacatagctcaagtttaatctctttcgatttgatttttccattgttgcaccatcaggtttgattctaattcctttcca 32880619  T
Q  475 tctcctttaattcatttcca 494  Q
    |||| || ||||||||||||    
T  32880618 tctctttcaattcatttcca 32880599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 246 - 399
Target Start/End: Original strand, 48032683 - 48032836
Alignment:
Q  246 aaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaacc 345  Q
    |||||| ||||||||||| ||||||||| |||||||||||||| ||||||||| ||||||||||| ||||||||||| |||||| || ||||||||||||    
T  48032683 aaaaaaccgcacttggttcagatgaattcggatgacttttgcaatgaaccgcgcggttcggtttggtttgcggtttgcatctcagcagccgaaccaaacc 48032782  T
Q  346 aaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattac 399  Q
    |||||||||||||||||| |  |||||||||||||| |||||||||||||||||    
T  48032783 aaaccaaaccgcaagaatcatgaatattacttaaacatgtactagcccaattac 48032836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 335 - 543
Target Start/End: Complemental strand, 33002969 - 33002761
Alignment:
Q  335 cgaaccaaaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgattttt 434  Q
    |||||||||| ||||||||||||||||||||  |||||| ||||||  ||||| || |||||||||||||  || ||||||||||||| |||||||||||    
T  33002969 cgaaccaaactaaaccaaaccgcaagaataatgaatatttcttaaatatgtaccagtccaattacatagctcaataataatctcttttgattcgattttt 33002870  T
Q  435 ccattgttgtaccatcacgttcgattctaattcctttccatctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttc 534  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||| || |||| ||||||  ||| | |||| ||| |||| ||  |||||||||||||||    
T  33002869 ccattgttgcaccatcaggttcgattctaactcctttccatctctttcaatttatttcctgtgaagtatttgtttcctttactctccaataatttgtttc 33002770  T
Q  535 atgcctatg 543  Q
    |||| ||||    
T  33002769 atgcttatg 33002761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 407 - 543
Target Start/End: Original strand, 27641871 - 27642007
Alignment:
Q  407 aagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccatctcctttaattcatttccaatgatgaattta 506  Q
    |||||||||||||||| |||||||||||||||||| | ||||||| |||||| |||||||||| |||||||| || ||||||||| || |||||||||||    
T  27641871 aagaataatctcttttgattcgatttttccattgtagcaccatcaggttcgaatctaattcctctccatctctttcaattcattttcagtgatgaattta 27641970  T
Q  507 ttttcttttcttcccaataatttgtttcatgcctatg 543  Q
    ||| |||||||||||||||||||||||||||| ||||    
T  27641971 tttccttttcttcccaataatttgtttcatgcttatg 27642007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 275 - 543
Target Start/End: Complemental strand, 43030919 - 43030671
Alignment:
Q  275 ggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaa-ccgcaagaataagaaatatt 373  Q
    |||||||||||||||| |||  || |||||||||||     ||||||| |||||| ||||||||||||||||||||||| ||||||||||||  ||||      
T  43030919 ggatgacttttgcacttaactacgcggttcggtttg-----cggtttgcatctcagcaaccgaaccaaaccaaaccaaaaccgcaagaataatgaata-- 43030827  T
Q  374 acttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttcc 473  Q
                 |||||| |||||||||||  ||||||||||| |||  |||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  43030826 -------------ctagccaaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaagttcgattctaattcctttcc 43030740  T
Q  474 atctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgcctatg 543  Q
    ||||| || ||||||| |||| |||||||||| ||| ||||  |||||||||||||||||||||| ||||    
T  43030739 atctctttcaattcatctccagtgatgaattt-tttcctttatttcccaataatttgtttcatgcttatg 43030671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 233 - 364
Target Start/End: Complemental strand, 10369741 - 10369610
Alignment:
Q  233 aaatcgataccgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaaca 332  Q
    ||||||| |||| |||||| |||||||||||  |||||||| |||||||||||  ||||||||||| ||||||||| | ||||||||||| |||||| ||    
T  10369741 aaatcgaaaccgcaaaaaaccgcacttggttcggatgaattcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagca 10369642  T
Q  333 accgaaccaaaccaaaccaaaccgcaagaata 364  Q
    ||||||||||||||||||||||||||| ||||    
T  10369641 accgaaccaaaccaaaccaaaccgcaaaaata 10369610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 347 - 538
Target Start/End: Complemental strand, 39098378 - 39098187
Alignment:
Q  347 aaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtac 446  Q
    |||| ||||||||||||||  |||||||||||||| ||||||| | |||||| |||||  ||||||||||| |||| | ||||||||| |||||||| ||    
T  39098378 aaccgaaccgcaagaataatgaatattacttaaacatgtactaacacaattaaatagctcaagaataatcttttttgaatcgattttttcattgttgcac 39098279  T
Q  447 catcacgttcgattctaattcctttccatctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgc 538  Q
    ||||| | | |||||||||| ||||||||||| || |||||||||| | |||  || || ||| |||| |||||||||||||||||| ||||    
T  39098278 catcaggattgattctaatttctttccatctctttcaattcatttcgagtgacaaacttgtttcctttacttcccaataatttgtttgatgc 39098187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 241 - 364
Target Start/End: Original strand, 35401771 - 35401894
Alignment:
Q  241 accgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaacc 340  Q
    |||| |||||| |||||||||||  ||||| || |||||||||||  ||||||||||| ||||||||| | ||||||||||| |||||| ||| ||||||    
T  35401771 accgcaaaaaaccgcacttggttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaacc 35401870  T
Q  341 aaaccaaaccaaaccgcaagaata 364  Q
    ||||||||||||||||||| ||||    
T  35401871 aaaccaaaccaaaccgcaaaaata 35401894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 177 - 364
Target Start/End: Original strand, 51149205 - 51149392
Alignment:
Q  177 taggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttgg 276  Q
    |||||||||| |||||| || |||  ||| ||||||| || ||||  ||  |||| ||| ||| |||| |||||| |||||||||||  ||||| || ||    
T  51149205 taggggtgttcaaaaccgaaccaacccaatagaaaaaccgcaaaccgaaccaatccaaaccgaaaccgcaaaaaaccgcacttggttcggatgagttcgg 51149304  T
Q  277 atgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 364  Q
    |||||||||  ||||||||||| ||||||||| | ||| ||||||| |||||| ||||| ||||||||||||||||||||||| ||||    
T  51149305 atgacttttagactgaaccgcgcggttcggttcggtttacggtttgcatctcagcaacctaaccaaaccaaaccaaaccgcaaaaata 51149392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 177 - 364
Target Start/End: Complemental strand, 33361499 - 33361312
Alignment:
Q  177 taggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttgg 276  Q
    |||||||||| |||||| || |||  ||| ||||||| || ||||  ||  |||| ||| ||| |||| |||||| |||||||||||  ||||| || ||    
T  33361499 taggggtgttcaaaaccgaaccaacccaatagaaaaaccgcaaaccgaaccaatccaaaccgaaaccgcaaaaaaccgcacttggttcggatgagttcgg 33361400  T
Q  277 atgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 364  Q
    |||||||||  ||||||||||| ||||  |||   ||||||||||| |||||| |||||||||| |||||||||||||||||| ||||    
T  33361399 atgacttttagactgaaccgcgcggtttagttcagtttgcggtttgcatctcagcaaccgaaccgaaccaaaccaaaccgcaaaaata 33361312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 246 - 364
Target Start/End: Original strand, 4669199 - 4669317
Alignment:
Q  246 aaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaacc 345  Q
    |||||| |||||||||||  ||||| || |||||||||||  ||||||||||| ||||||||| | |||||| |||| |||||| ||||| |||||||||    
T  4669199 aaaaaaccgcacttggttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcgatttgcatctcagcaaccaaaccaaacc 4669298  T
Q  346 aaaccaaaccgcaagaata 364  Q
    |||| ||||||||| ||||    
T  4669299 aaactaaaccgcaaaaata 4669317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 275 - 364
Target Start/End: Complemental strand, 34795012 - 34794923
Alignment:
Q  275 ggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 364  Q
    |||||||||||  ||||||||| | ||||||||| | ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  34795012 ggatgacttttagactgaaccgtgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 34794923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 207 - 350
Target Start/End: Original strand, 27641725 - 27641868
Alignment:
Q  207 agaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcgg 306  Q
    ||||||| || |||| |||  |||| |||| || || |||||||| |||||||||||  ||||||||  ||||||||||||||||||||||| |||| |     
T  27641725 agaaaaaccgcaaaccaaaccaatccaaattgaaactgtaaaaaaccgcacttggttcggatgaattcagatgacttttgcactgaaccgcgtggtttga 27641824  T
Q  307 tttgatttgcggtttgtatctcaacaaccgaaccaaaccaaacc 350  Q
    |||| ||||||||||| |||||| | ||  ||||||||||||||    
T  27641825 tttggtttgcggtttgcatctcagccactaaaccaaaccaaacc 27641868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 207 - 355
Target Start/End: Original strand, 10481078 - 10481226
Alignment:
Q  207 agaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcgg 306  Q
    |||||||||| ||||| || ||||| ||||||| || | ||||||||  | ||||||| |||| |||||||| |||||   ||| |||||   |||| |     
T  10481078 agaaaaatcgcaaactgaactaatcaaaatcgaaactgcaaaaaatcatatttggtttggatgtatttggatcactttattactcaaccgtatggtttga 10481177  T
Q  307 tttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaacc 355  Q
    ||||||||||||||| ||| | | |||||||||||||||||||||||||    
T  10481178 tttgatttgcggtttttattttatcaaccgaaccaaaccaaaccaaacc 10481226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 381
Target Start/End: Complemental strand, 55130221 - 55130150
Alignment:
Q  310 gatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattacttaaac 381  Q
    |||||||||||| ||||| ||||||||||||||  ||||| ||||||||| |  || |||||||| ||||||    
T  55130221 gatttgcggtttttatcttaacaaccgaaccaattcaaactaaaccgcaacataaaaaaatattaattaaac 55130150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 177 - 543
Target Start/End: Original strand, 35039411 - 35039777
Alignment:
Q  177 taggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttgg 276  Q
    |||||||||| |||||| || |||  ||| ||||||| || |||| |||  |||| ||| | | || | |||||| |||||||||||  |||||||| ||    
T  35039411 taggggtgttcaaaaccgaaccaacccaatagaaaaaccgcaaaccaaaccaatccaaaccaaaactgcaaaaaaccgcacttggttcggatgaattcgg 35039510  T
Q  277 atgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattact 376  Q
    ||||||||||| |||||||||| |||| |||| | ||||||||||| |||||||||||| |||||||||||||||||||||||||||||  ||| |||||    
T  35039511 atgacttttgcgctgaaccgcgcggtttggttcggtttgcggtttgcatctcaacaaccaaaccaaaccaaaccaaaccgcaagaataatgaatgttact 35039610  T
Q  377 taaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccatc 476  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||  ||| |||||||||||||||||||    
T  35039611 taaacatgtactagcccaattacatagcccaagaataatctcttttgattcgatttttccattgttgcaccatcaaattcaattctaattcctttccatc 35039710  T
Q  477 tcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgcctatg 543  Q
    || ||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||| ||||    
T  35039711 tcttttaattcatttccagtgatgaatttgtttccttttcttcccaataatttgtttcatgcttatg 35039777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 280 - 536
Target Start/End: Complemental strand, 33550830 - 33550574
Alignment:
Q  280 acttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattacttaa 379  Q
    ||||||||||||||||||| |||| |||| | ||||||||||| |||||| |||||||||| ||||||||||||||||||||||||  ||||||||||||    
T  33550830 acttttgcactgaaccgcgcggtttggttcggtttgcggtttgcatctcagcaaccgaaccgaaccaaaccaaaccgcaagaataatgaatattacttaa 33550731  T
Q  380 acttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccatctcc 479  Q
    || ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||| |||||     
T  33550730 acatgtactagcccaattacatagcccaagaataatctcttttgattcgatttttccattgttgcaccatcaggttcgattctaattcctttcgatctct 33550631  T
Q  480 tttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcat 536  Q
    ||||||||||||| | |||||||||| ||| ||||||||||||||||||||||||||    
T  33550630 tttaattcatttctagtgatgaatttgtttccttttcttcccaataatttgtttcat 33550574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 176 - 543
Target Start/End: Original strand, 13801454 - 13801816
Alignment:
Q  176 ttaggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttg 275  Q
    ||||||||||| |||||| || | |  ||| ||||||| || |||| |||  |||| ||||||| ||| ||||||| |||||||||||  |||||||| |    
T  13801454 ttaggggtgttcaaaaccgaacccacccaatagaaaaaccgcaaaccaaaccaatccaaatcgaaaccataaaaaaccgcacttggttcggatgaattcg 13801553  T
Q  276 gatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattac 375  Q
    ||||||||||| | ||||||||  |||||||||||     ||||||| |||||| |||| ||||||||||||||||||||||||||||||  ||||||||    
T  13801554 gatgacttttgtattgaaccgcatggttcggtttg-----cggtttgcatctcatcaactgaaccaaaccaaaccaaaccgcaagaataatgaatattac 13801648  T
Q  376 ttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccat 475  Q
    |||||  ||||||||||||||||||||||  |||||||||||||||| |||| ||||||||||||||| ||||||| ||||||||||||||||||| |||    
T  13801649 ttaaatatgtactagcccaattacatagctcaagaataatctcttttgattcaatttttccattgttgcaccatcaggttcgattctaattccttttcat 13801748  T
Q  476 ctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgcctatg 543  Q
    ||| || |||||||||||| |||||||||| ||| |||| |||||||||||||| |||||||| ||||    
T  13801749 ctctttcaattcatttccactgatgaatttgtttcctttacttcccaataatttatttcatgcttatg 13801816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 203 - 543
Target Start/End: Complemental strand, 25137727 - 25137388
Alignment:
Q  203 caacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggt 302  Q
    ||||||||||| || |||| |||  |||| ||| ||| |||| |||||| | |||||||||  |||||||| |||||||||||||||||||||||| |||    
T  25137727 caacagaaaaaccgcaaaccaaaccaatccaaaccgaaaccgcaaaaaaccccacttggttcggatgaattcggatgacttttgcactgaaccgcgcggt 25137628  T
Q  303 tcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacata 402  Q
    | |||||| || ||||| || |||||| ||||||||||||||  ||||||||| ||| |||||  |||||||||||||| ||||||| ||||||||||||    
T  25137627 ttggtttggtt-gcggtatgcatctcatcaaccgaaccaaactgaaccaaaccacaataataatgaatattacttaaacatgtactatcccaattacata 25137529  T
Q  403 gcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccatctcctttaattcatttccaatgatgaa 502  Q
    ||| |||||||||||||||| ||||||||||| || | ||| ||||||| |||| |||||||||| ||||| |||| || |||||||||||| |||||||    
T  25137528 gcccaagaataatctcttttgattcgattttttcaatattgcaccatcaggttcaattctaattcatttccttctctttcaattcatttccagtgatgaa 25137429  T
Q  503 tttattttcttttcttcccaataatttgtttcatgcctatg 543  Q
    ||| ||| |||||||| ||||||||||||||||||| ||||    
T  25137428 tttgtttccttttctttccaataatttgtttcatgcttatg 25137388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 275 - 543
Target Start/End: Complemental strand, 15860239 - 15859972
Alignment:
Q  275 ggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatatta 374  Q
    ||||||||||| |||||||||| | |||||| |||| ||||| ||||| | |||| |||||||||||||||||||||||| ||||||||||  |||||||    
T  15860239 ggatgacttttacactgaaccgtgcggttcgatttggtttgcagtttgcacctcaccaaccgaaccaaaccaaaccaaactgcaagaataatgaatatta 15860140  T
Q  375 cttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttcca 474  Q
     |||||| ||||||||||||||||||||||  |||||||||||||||| ||| || ||||||||||||| |||||||  | |||||||||||| |||| |    
T  15860139 attaaacatgtactagcccaattacatagctcaagaataatctcttttgattaga-ttttccattgttgcaccatcagttccgattctaattcttttcta 15860041  T
Q  475 tctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgcctatg 543  Q
    |||| || |||||||||  | |||||||||| ||| |||| |||| |||||||||||||||||| ||||    
T  15860040 tctctttcaattcatttttagtgatgaatttgtttcctttacttctcaataatttgtttcatgcttatg 15859972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 275 - 478
Target Start/End: Complemental strand, 10591350 - 10591147
Alignment:
Q  275 ggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatatta 374  Q
    |||||||||||||||||||||||| |||||| || | |||||||||||  |||||||||| ||||||||||||||  ||||||||||||||  |||||||    
T  10591350 ggatgacttttgcactgaaccgcgcggttcgattcggtttgcggtttgcgtctcaacaacagaaccaaaccaaactgaaccgcaagaataatgaatatta 10591251  T
Q  375 cttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttcca 474  Q
    ||||||| |||| |||||||||||||||||  ||||||||| |||||  ||||||||||| |||||||||||||||| ||||||||||||||| ||||||    
T  10591250 cttaaacatgtaatagcccaattacatagctcaagaataatgtctttcgattcgattttttcattgttgtaccatcaggttcgattctaattcatttcca 10591151  T
Q  475 tctc 478  Q
    ||||    
T  10591150 tctc 10591147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 228 - 536
Target Start/End: Original strand, 10390564 - 10390858
Alignment:
Q  228 aatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatct 327  Q
    |||| ||| ||| |||| |||||| |||||||||||  ||||||||   |||||||||||||||||||||| ||||||||| ||||||||||||| ||||    
T  10390564 aatccaaaccgaaaccgcaaaaaaccgcacttggttcggatgaattcaaatgacttttgcactgaaccgcgcggttcggttcgatttgcggtttgcatct 10390663  T
Q  328 caacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagc-ctaagaataatctcttttaatt 426  Q
    || |||||||||||||||||||||||||||||||||||  ||               || ||||| |||||| |||| | ||||||||||| |||  |||    
T  10390664 cagcaaccgaaccaaaccaaaccaaaccgcaagaataatgaa---------------tagtagccaaattacgtagctcaaagaataatctttttcgatt 10390748  T
Q  427 cgatttttccattgttgtaccatcacgttcgattctaattcctttccatctcctttaattcatttccaatgatgaatttattttcttttcttcccaataa 526  Q
    | ||||||||||||||| |||||||  ||||||| ||||||||||||||||| || |||||||||||| |||||||||| ||| ||||  ||| ||||||    
T  10390749 caatttttccattgttgcaccatcagattcgattttaattcctttccatctctttcaattcatttccagtgatgaatttgtttcctttatttctcaataa 10390848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 241 - 364
Target Start/End: Original strand, 5866619 - 5866742
Alignment:
Q  241 accgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaacc 340  Q
    |||| ||||||||||||||||||  ||||| || ||||| |||||  ||||||||||| ||||||||| | ||||||||||| |||||| ||||||||||    
T  5866619 accgcaaaaaatcgcacttggttcggatgagttcggatgtcttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaacc 5866718  T
Q  341 aaaccaaaccaaaccgcaagaata 364  Q
    ||||||||||||||||||| ||||    
T  5866719 aaaccaaaccaaaccgcaaaaata 5866742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 241 - 364
Target Start/End: Complemental strand, 12271028 - 12270905
Alignment:
Q  241 accgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaacc 340  Q
    |||| |||||| |||||||||||  ||||| || |||||||||||  ||||||||||| ||||||||| | ||||||||||| |||||| ||||||||||    
T  12271028 accgcaaaaaaccgcacttggttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaacc 12270929  T
Q  341 aaaccaaaccaaaccgcaagaata 364  Q
    ||||||||||||||||||| ||||    
T  12270928 aaaccaaaccaaaccgcaaaaata 12270905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 246 - 392
Target Start/End: Original strand, 10493933 - 10494079
Alignment:
Q  246 aaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaacc 345  Q
    ||||| ||||||||||||  ||| |||||| |||||||||||||||||||| |  ||||| || | ||||| ||||| |||||| ||||  |||||||||    
T  10493933 aaaaactcgcacttggttcggataaatttgaatgacttttgcactgaaccgtgtagttcgattcggtttgcagtttgcatctcagcaactaaaccaaacc 10494032  T
Q  346 aaaccaaaccgcaagaataagaaatattacttaaacttgtactagcc 392  Q
    ||||||||| ||||||||||    | |||||||||||||||||||||    
T  10494033 aaaccaaactgcaagaataatcgttgttacttaaacttgtactagcc 10494079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 193; Significance: 1e-104; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 176 - 536
Target Start/End: Complemental strand, 48996690 - 48996330
Alignment:
Q  176 ttaggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttg 275  Q
    ||||||||||| ||||||||| |||  ||| |||||||  | |||| |||  |||| ||||||| |||| ||||||||||||||||||  ||| |||| |    
T  48996690 ttaggggtgttcaaaaccaaaccaacccaatagaaaaactgcaaaccaaaccaatccaaatcgaaaccgcaaaaaatcgcacttggttcggatcaattcg 48996591  T
Q  276 gatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattac 375  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||    
T  48996590 gatgacttttgcaatgaaccgcgcggttcggtttgatttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaagaataatgaatattac 48996491  T
Q  376 ttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccat 475  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||  |||||||||||||||||||||     
T  48996490 ttaaacatgtactagcctaattacatagcctaagaataatctcttttgattcgattttttcattgttgcaccatcaaattcgattctaattcctttccac 48996391  T
Q  476 ctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcat 536  Q
    ||| || |||| |||| || |||| ||||| |||  |||||||| ||||||||||||||||    
T  48996390 ctctttcaatttattttcagtgataaatttgtttcattttcttctcaataatttgtttcat 48996330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 246 - 538
Target Start/End: Original strand, 40899626 - 40899918
Alignment:
Q  246 aaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaacc 345  Q
    ||||||||||||||||||  |||||||| ||||||||||||| |||||||||| |||| |||| | ||||||||||| |||||| |||||||||||||||    
T  40899626 aaaaaatcgcacttggttcggatgaattcggatgacttttgcgctgaaccgcgcggtttggttcggtttgcggtttgcatctcagcaaccgaaccaaacc 40899725  T
Q  346 aaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgta 445  Q
    ||||||||||||||||||||  ||| |||||||||| |||| |||||||||||||||||| ||| |||||||||||| |||||||||||||||||||| |    
T  40899726 aaaccaaaccgcaagaataatgaatgttacttaaacatgtaatagcccaattacatagcccaaggataatctcttttgattcgatttttccattgttgca 40899825  T
Q  446 ccatcacgttcgattctaattcctttccatctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgc 538  Q
    ||||||  ||| ||||||||||||||||||||| || |||||||||||| |||||||||||||| |||| ||| ||||||||||| |||||||    
T  40899826 ccatcaaattcaattctaattcctttccatctctttaaattcatttccagtgatgaatttatttcctttacttaccaataatttgattcatgc 40899918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 176 - 543
Target Start/End: Complemental strand, 32137306 - 32136936
Alignment:
Q  176 ttaggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttg 275  Q
    ||||| ||||| |||||| || |||  ||| ||||||| || |||| |||  |||| ||| ||| |||| ||||||||||||||| ||  |||||||||     
T  32137306 ttaggagtgttcaaaaccgaaccaacccaatagaaaaaccgcaaaccaaaccaatccaaaccgaaaccgcaaaaaatcgcacttgattcggatgaatttt 32137207  T
Q  276 ---gatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatat 372  Q
       ||||||||||||| ||||||| | ||||||||||| ||||||||||| |||||| ||||||||||||| ||||||||||| ||||||| |  |||||    
T  32137206 tcagatgacttttgcaatgaaccgtgcggttcggtttggtttgcggtttgcatctcagcaaccgaaccaaatcaaaccaaaccacaagaatgatgaatat 32137107  T
Q  373 tacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttc 472  Q
    ||||||||| |||||||||||||||||||||| |||||||||| |||||| ||||||||||| |||||||| ||||||| |||||||| |||||||||||    
T  32137106 tacttaaacatgtactagcccaattacatagcttaagaataatttctttttattcgattttttcattgttgcaccatcaggttcgattttaattcctttc 32137007  T
Q  473 catctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgcctatg 543  Q
    |||||| || |||||||||| | |||||||||| ||| |||| ||||||||| ||||||||||||| ||||    
T  32137006 catctctttcaattcatttcaagtgatgaatttgtttcctttacttcccaatcatttgtttcatgcttatg 32136936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 177 - 543
Target Start/End: Original strand, 30193453 - 30193819
Alignment:
Q  177 taggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttgg 276  Q
    |||||||||| |||||| || ||| |||| |||||||  | |||| |||  |||| ||| ||| ||||||||||| ||||| || ||  |||||||| |     
T  30193453 taggggtgttcaaaaccgaaccaactcaatagaaaaactgcaaaccaaaccaatccaaaccgaaaccgtaaaaaaccgcacatgattcggatgaattcgt 30193552  T
Q  277 atgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattact 376  Q
    |||||||||||| ||||||| | |||||||||   ||||| ||||| |||||| ||||||||||||||||||||| |||||||||||||  |||||||||    
T  30193553 atgacttttgcaatgaaccgtgcggttcggttcagtttgcagtttgcatctcagcaaccgaaccaaaccaaaccataccgcaagaataatgaatattact 30193652  T
Q  377 taaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccatc 476  Q
    ||||  |||| || ||||||||||||||  ||||||||| |||||| |||||||||||||||||||| ||||||| |||||||| |||||||||||||||    
T  30193653 taaatatgtattatcccaattacatagctcaagaataatttcttttgattcgatttttccattgttgcaccatcaggttcgattttaattcctttccatc 30193752  T
Q  477 tcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgcctatg 543  Q
    || || ||||||||| || |||||||||| ||| |||| ||||||||||||||||||||||| ||||    
T  30193753 tctttcaattcatttacagtgatgaatttgtttcctttacttcccaataatttgtttcatgcttatg 30193819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 228 - 543
Target Start/End: Original strand, 8176136 - 8176441
Alignment:
Q  228 aatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatct 327  Q
    |||| ||||||| |||| |||||| |||||||||||  |||||| | | ||||||||||||||||||||||  |||||||| ||||||||||||| ||||    
T  8176136 aatccaaatcgaaaccgcaaaaaaccgcacttggttcggatgaactcgaatgacttttgcactgaaccgcgtcgttcggttcgatttgcggtttgcatct 8176235  T
Q  328 caacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattc 427  Q
    || |||||          ||||||||||||||||||||  || ||||||||||| ||||||||||||||||||||||| || ||||||||||||| ||||    
T  8176236 cagcaacc----------aaaccaaaccgcaagaataatgaagattacttaaacatgtactagcccaattacatagcccaaaaataatctcttttgattc 8176325  T
Q  428 gatttttccattgttgtaccatcacgttcgattctaattcctttccatctcctttaattcatttccaatgatgaatttattttcttttcttcccaataat 527  Q
    |||||||||||||||| ||||||| ||||||| |||||||||||||||||| |||||||||||| || | |||||||| |||  ||||||||||||||||    
T  8176326 gatttttccattgttgcaccatcaggttcgatcctaattcctttccatctcttttaattcattttcagttatgaatttttttctttttcttcccaataat 8176425  T
Q  528 ttgtttcatgcctatg 543  Q
    ||||||||||| ||||    
T  8176426 ttgtttcatgcttatg 8176441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 276 - 543
Target Start/End: Complemental strand, 6333832 - 6333560
Alignment:
Q  276 gatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaac-----cgcaagaataagaaat 370  Q
    |||||||||| |||||||||||| | ||||||| ||||||||| ||| |||| | ||||||||||||||||||||||||     |||||||||||  |||    
T  6333832 gatgacttttacactgaaccgcgcgattcggttcgatttgcggcttgcatcttagcaaccgaaccaaaccaaaccaaactaaaccgcaagaataatgaat 6333733  T
Q  371 attacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctt 470  Q
    ||||||||||  ||||||||||||||||||||||  |||||||||||||||| |||| |||||||||| |||| ||||||| ||||||||||||||| ||    
T  6333732 attacttaaatatgtactagcccaattacatagctcaagaataatctcttttgattcaatttttccatcgttgcaccatcaggttcgattctaattcatt 6333633  T
Q  471 tccatctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgcctatg 543  Q
    |||||||| || |||||||||||| |||||||||| ||| |||| ||||||||||||||||||||||| ||||    
T  6333632 tccatctctttcaattcatttccagtgatgaatttgtttcctttacttcccaataatttgtttcatgcttatg 6333560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 275 - 543
Target Start/End: Original strand, 40806396 - 40806656
Alignment:
Q  275 ggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatatta 374  Q
    ||||||||||| |||||||||||      ||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||  |||||||    
T  40806396 ggatgacttttacactgaaccgca-----cggtttgatttgcggtttgcatctcagcaactgaaccaaaccaaaccaaaccgcaagaataatgaatatta 40806490  T
Q  375 cttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttcca 474  Q
    ||||||  ||||||||| ||||||||||||  |||||||||||||||| ||||||||||| ||||||||   || || ||||||||||||||||||||||    
T  40806491 cttaaatatgtactagctcaattacatagctcaagaataatctcttttgattcgattttttcattgttg---caacaggttcgattctaattcctttcca 40806587  T
Q  475 tctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgcctatg 543  Q
    |||| || ||||||||||||||||| ||||| ||| |||| ||| ||||||||||||||||||| ||||    
T  40806588 tctctttcaattcatttccaatgataaatttgtttcctttactttccaataatttgtttcatgcttatg 40806656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 177 - 543
Target Start/End: Complemental strand, 10219283 - 10218927
Alignment:
Q  177 taggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttgg 276  Q
    |||||||||| |||||| ||  ||  ||| ||||||| || |||| |||  |||| ||| ||| |||| ||||||  ||||||||||   ||||| | ||    
T  10219283 taggggtgttcaaaaccgaacgaacccaatagaaaaaccgcaaaccaaaccaatccaaaccgaaaccgcaaaaaactgcacttggttcgaatgaactcgg 10219184  T
Q  277 atgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattact 376  Q
    ||||||||| |||||||||||| ||||||||||| ||||||||||| |||||||  |||          ||||||||||||||||||||  |||||||||    
T  10219183 atgacttttacactgaaccgcgcggttcggtttggtttgcggtttgcatctcaagtacc----------aaaccaaaccgcaagaataatgaatattact 10219094  T
Q  377 taaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccatc 476  Q
    ||||| ||||||||||||||||||||||  |||||||||||| ||| ||| |||||||||||||||| ||||||  ||||||||||||||||||||||||    
T  10219093 taaacatgtactagcccaattacatagctcaagaataatctcatttgattagatttttccattgttgcaccatctggttcgattctaattcctttccatc 10218994  T
Q  477 tcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgcctatg 543  Q
    || || ||||||||| || |||||||||| |||  ||| |||| |||||||||||||||||| ||||    
T  10218993 tctttcaattcattttcagtgatgaatttgtttcttttacttctcaataatttgtttcatgcttatg 10218927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 312 - 543
Target Start/End: Original strand, 23937130 - 23937361
Alignment:
Q  312 tttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaa 411  Q
    |||| |||||| ||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||| | |||||| ||||||||||| |  |||||    
T  23937130 tttgtggtttgcatctcaacaactgaaccaaaccaaactaaaccgcaagaataataaatattacttaaacatatactagtccaattacataactcaagaa 23937229  T
Q  412 taatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccatctcctttaattcatttccaatgatgaatttattttc 511  Q
    ||||||||||  ||| |||||||||||||||| ||||||| |||| ||||||||||||||||||||| || |||||||||| | |||||||||| |||      
T  23937230 taatctctttagatttgatttttccattgttgcaccatcatgttctattctaattcctttccatctctttcaattcatttctagtgatgaatttgtttca 23937329  T
Q  512 ttttcttcccaataatttgtttcatgcctatg 543  Q
    |||  |||||||||||||||||||||| ||||    
T  23937330 tttatttcccaataatttgtttcatgcttatg 23937361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 278 - 543
Target Start/End: Complemental strand, 52345216 - 52344952
Alignment:
Q  278 tgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattactt 377  Q
    ||||||||||||||||||||  ||||||||| | ||||||||||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||||    
T  52345216 tgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaagaataatgaatattactt 52345117  T
Q  378 aaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccatct 477  Q
    |||| |||||||| || ||| ||||||  ||||||| || ||||| ||| |||||||||||| ||| | ||||| |||||||||||| |  |||||| ||    
T  52345116 aaacatgtactagtccgattgcatagctcaagaatagtcgcttttgatttgatttttccattattgca-catcaggttcgattctaacttatttccaact 52345018  T
Q  478 cctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgcctatg 543  Q
    | || ||||||| | || |||||||||| ||| |||| ||| ||||||||||||||||||| ||||    
T  52345017 ctttcaattcatattcactgatgaatttgtttcctttactttccaataatttgtttcatgcttatg 52344952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 177 - 543
Target Start/End: Complemental strand, 31301999 - 31301643
Alignment:
Q  177 taggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttgg 276  Q
    |||||||||| |||||| || |||  ||| ||||||| || |||| |||  |||| | | ||| || | |||||| |||||||||||  ||||||||  |    
T  31301999 taggggtgttcaaaaccgaaccaacccaatagaaaaaccgcaaaccaaaccaatccagaccgaaactgcaaaaaaccgcacttggttcggatgaattcag 31301900  T
Q  277 atgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattact 376  Q
    ||||||||| ||||||||| |  ||||| ||| | ||||||||||| |||||| |||||||||||||||          ||||||||||  |||||||||    
T  31301899 atgactttt-cactgaaccacatggttcagttcggtttgcggtttgcatctcagcaaccgaaccaaacc----------gcaagaataatcaatattact 31301811  T
Q  377 taaacttgtactagcccaattacatagcctaagaataatctctttta-attcgatttttccattgttgtaccatcacgttcgattctaattcctttccat 475  Q
    |||||||||| ||||||||||||||| |  ||||||||| | ||||  |||||| |||| |||||||| |||||||  |||||||||||||| |||||||    
T  31301810 taaacttgtattagcccaattacataactcaagaataattttttttttattcgactttttcattgttgcaccatcagtttcgattctaattcatttccat 31301711  T
Q  476 ctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgcctatg 543  Q
    |||||| |||||||||||| |||||||||| ||| |||||||| ||||||||||||||||||| ||||    
T  31301710 ctccttcaattcatttccagtgatgaatttgtttccttttctttccaataatttgtttcatgcttatg 31301643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 241 - 380
Target Start/End: Original strand, 26477730 - 26477869
Alignment:
Q  241 accgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaacc 340  Q
    ||||||||||| |||||||||||  |||||||| |||||||||||| ||| ||||| | ||||||||||| ||||||||||| |||||| ||||||||||    
T  26477730 accgtaaaaaaccgcacttggttcggatgaattcggatgacttttgtactaaaccgtgcggttcggtttggtttgcggtttgcatctcagcaaccgaacc 26477829  T
Q  341 aaaccaaaccaaaccgcaagaataagaaatattacttaaa 380  Q
    |||||||||||| || |||||||||  |||||||||||||    
T  26477830 aaaccaaaccaatccacaagaataatgaatattacttaaa 26477869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 324 - 543
Target Start/End: Complemental strand, 43630996 - 43630795
Alignment:
Q  324 atctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctctttta 423  Q
    |||||| |||||||||||||||||||||||||||||||||||  |||||||||||||  |||| |||||||| ||||||||  ||||||               
T  43630996 atctcagcaaccgaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaaaatgtaatagcccaactacatagctcaagaat----------- 43630908  T
Q  424 attcgatttttccattgttgtaccatcacgttcgattctaattcctttccatctcctttaattcatttccaatgatgaatttattttcttttcttcccaa 523  Q
           |||| |||||||| ||||| | |||||||||||||||||||||||||| || ||||||||| || |||||||||| ||| |||| ||||||||    
T  43630907 -------tttttcattgttgcaccattaagttcgattctaattcctttccatctctttcaattcatttgcagtgatgaatttgtttcctttacttcccaa 43630815  T
Q  524 taatttgtttcatgcctatg 543  Q
    ||||||||||||||| ||||    
T  43630814 taatttgtttcatgcttatg 43630795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 414 - 518
Target Start/End: Complemental strand, 29639828 - 29639724
Alignment:
Q  414 atctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccatctcctttaattcatttccaatgatgaatttattttctt 513  Q
    ||||| |||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||  ||    
T  29639828 atctcctttaattcgatttttccattgttgcatcatcaggttcgattctaattcctttccatctccttcaattcatttccaatgatgaatttgtttcatt 29639729  T
Q  514 ttctt 518  Q
    |||||    
T  29639728 ttctt 29639724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 172 - 364
Target Start/End: Original strand, 50570490 - 50570682
Alignment:
Q  172 gtttttaggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaa 271  Q
    |||| |||||||||| |||||| || |||  ||| ||||||| || ||||  ||  |||| ||| ||| |||| |||||| |||||||||||  |||||     
T  50570490 gtttctaggggtgttcaaaaccgaaccaacccaatagaaaaaccgcaaaccgaaccaatccaaaccgaaaccgcaaaaaaccgcacttggttcggatgag 50570589  T
Q  272 tttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 364  Q
    || |||||||||||  ||||||||||| ||||||||| | ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  50570590 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 50570682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 176 - 364
Target Start/End: Complemental strand, 29640182 - 29639994
Alignment:
Q  176 ttaggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttg 275  Q
    ||||||||||| |||||| || |||  ||| ||||||| || ||||  ||  || | ||| ||| |||| |||||| |||||||||||  ||||| || |    
T  29640182 ttaggggtgttcaaaaccgaaccaacccaatagaaaaaccgcaaaccgaaccaacccaaaccgaaaccgcaaaaaaccgcacttggttcggatgagttcg 29640083  T
Q  276 gatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 364  Q
    ||||||||||  ||||||||||| ||||||||| | ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  29640082 gatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 29639994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 177 - 364
Target Start/End: Complemental strand, 42558269 - 42558082
Alignment:
Q  177 taggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttgg 276  Q
    |||||||||| |||||| || |||  ||| ||||||| || ||||  ||  |||| ||| ||| |||| |||||| |||||||||||  ||||| || ||    
T  42558269 taggggtgttcaaaaccgaaccaacccaatagaaaaaccgcaaaccgaaccaatccaaaccgaaaccgcaaaaaaccgcacttggttcggatgagttcgg 42558170  T
Q  277 atgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 364  Q
    |||||||||  ||||||||| | ||||||||| | ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  42558169 atgacttttagactgaaccgtgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 42558082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 228 - 365
Target Start/End: Original strand, 5261379 - 5261516
Alignment:
Q  228 aatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatct 327  Q
    |||| ||| ||| |||| ||||||||||||||| ||  ||||||||  ||||||||||||||||||||||| ||||||||| | ||||||||||| ||||    
T  5261379 aatccaaaccgaaaccgcaaaaaatcgcacttgattcggatgaattcagatgacttttgcactgaaccgcgcggttcggttcggtttgcggtttgcatct 5261478  T
Q  328 caacaaccgaaccaaaccaaaccaaaccgcaagaataa 365  Q
    ||  || ||||||||| |||||||||| ||||||||||    
T  5261479 cagaaatcgaaccaaatcaaaccaaactgcaagaataa 5261516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 246 - 364
Target Start/End: Complemental strand, 36078801 - 36078683
Alignment:
Q  246 aaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaacc 345  Q
    |||||| |||||||||||  ||||| || |||||||||||  ||||||||||| |||||||||   ||||| ||||| |||||| |||||||||||||||    
T  36078801 aaaaaaccgcacttggttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcagtttgcagtttgcatctcagcaaccgaaccaaacc 36078702  T
Q  346 aaaccaaaccgcaagaata 364  Q
    |||||||||||||| ||||    
T  36078701 aaaccaaaccgcaaaaata 36078683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 241 - 364
Target Start/End: Original strand, 29643308 - 29643431
Alignment:
Q  241 accgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaacc 340  Q
    |||| |||||| |||| ||||||  ||||| || |||||||||||  ||||||||||| ||||||||| | |||| || ||| |||||| ||||||||||    
T  29643308 accgcaaaaaaccgcatttggttcggatgagttcggatgacttttaaactgaaccgcgcggttcggttcggtttgtggcttgcatctcagcaaccgaacc 29643407  T
Q  341 aaaccaaaccaaaccgcaagaata 364  Q
    ||||||||||||||||||| ||||    
T  29643408 aaaccaaaccaaaccgcaaaaata 29643431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 275 - 422
Target Start/End: Complemental strand, 52345353 - 52345216
Alignment:
Q  275 ggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatatta 374  Q
    |||||||||||| |||||| |||  ||||||||| | |||| |||||| |||||| |||||||||||          ||||||||||||||  |||||||    
T  52345353 ggatgacttttgtactgaatcgcatggttcggttcggtttgtggtttgcatctcagcaaccgaacca----------aaccgcaagaataatgaatatta 52345264  T
Q  375 cttaaacttgtactagcccaattacatagcctaagaataatctctttt 422  Q
    ||||||| ||||||||||||||| ||||||  ||||||| || |||||    
T  52345263 cttaaacatgtactagcccaattgcatagctcaagaatagtcgctttt 52345216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 355
Target Start/End: Original strand, 1564490 - 1564669
Alignment:
Q  176 ttaggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttg 275  Q
    ||||||||||||||||||||| |||  ||| |||||||||||||||| ||| |||  ||||||| || | |||||| |||| ||||||  |||| ||| |    
T  1564490 ttaggggtgtttaaaaccaaaccaatccaaaagaaaaatcgtaaactgaatcaattcaaatcgaaactgcaaaaaaccgcatttggttcggatgtattgg 1564589  T
Q  276 gatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaacc 355  Q
    ||| | | ||  | | ||||||  |||| |||| | ||||||||||  || | | |||| ||||||||||||||||||||    
T  1564590 gataattcttttagttaaccgcatggtttggttcggtttgcggttttgattttaccaactgaaccaaaccaaaccaaacc 1564669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 181 - 359
Target Start/End: Complemental strand, 41326040 - 41325862
Alignment:
Q  181 ggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttggatga 280  Q
    |||||| |||| |||| |||  ||| ||||||| || |||| ||||||||||||||||| |  | ||||||| ||| ||| ||  |||| |||||||| |    
T  41326040 ggtgttcaaaatcaaaccaatccaatagaaaaaccgcaaaccaaattaatctaaatcgaaaatgcaaaaaattgcatttgattcggatgtatttggatca 41325941  T
Q  281 cttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaa 359  Q
     || |  ||| ||| ||  |||| |||| | ||||| ||||  || | | |||||||||||||||||||||||||||||    
T  41325940 attatttactcaactgcatggtttggttcggtttgcagttttgattttaccaaccgaaccaaaccaaaccaaaccgcaa 41325862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 364
Target Start/End: Complemental strand, 51395282 - 51395253
Alignment:
Q  335 cgaaccaaaccaaaccaaaccgcaagaata 364  Q
    ||||||||||||||||||||||||||||||    
T  51395282 cgaaccaaaccaaaccaaaccgcaagaata 51395253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 247 - 359
Target Start/End: Complemental strand, 48338917 - 48338805
Alignment:
Q  247 aaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaacca 346  Q
    ||||| |||| || |||| |||| ||| |||| ||||||   || ||||||  |||| |||||| ||||||||||  || | | ||||||||||||||||    
T  48338917 aaaaaccgcatttagtttggatgtattcggatcacttttttgctcaaccgcatggtttggtttggtttgcggttttcattttaccaaccgaaccaaacca 48338818  T
Q  347 aaccaaaccgcaa 359  Q
    ||| |||||||||    
T  48338817 aacaaaaccgcaa 48338805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 177 - 543
Target Start/End: Original strand, 69008 - 69374
Alignment:
Q  177 taggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttgg 276  Q
    ||||||||||||||||| || |||  ||| ||||||| |  |||| |||| |||| ||| | | |||| ||||||  ||| ||||||| |||||||| ||    
T  69008 taggggtgtttaaaaccgaaccaacccaatagaaaaaccaaaaaccaaatcaatccaaacctaaaccgcaaaaaacagcatttggtttggatgaattcgg 69107  T
Q  277 atgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattact 376  Q
    |||||||||||| ||||||||| ||||||||||| ||||||||||| |||||| |||||||||||||||||| ||| ||||||||||||  |||||||||    
T  69108 atgacttttgcaatgaaccgcgcggttcggtttggtttgcggtttgcatctcagcaaccgaaccaaaccaaaacaacccgcaagaataatgaatattact 69207  T
Q  377 taaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccatc 476  Q
    ||||| |||||||||| |||||||||||| || ||||||||||||| |||||||||||||||||||| |||||||  |||||||||||||||||||||||    
T  69208 taaacatgtactagcctaattacatagcccaataataatctcttttgattcgatttttccattgttgcaccatcaaattcgattctaattcctttccatc 69307  T
Q  477 tcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgcctatg 543  Q
    || || |||||||||||| |||| ||||| |||  ||||||||||||||||||||||||||| ||||    
T  69308 tctttcaattcatttccagtgataaatttgtttcattttcttcccaataatttgtttcatgcttatg 69374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 177 - 462
Target Start/End: Original strand, 77114 - 77399
Alignment:
Q  177 taggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttgg 276  Q
    ||||||||||||||||| || |||  ||| ||||||| |  |||| |||| |||| ||| | | |||| ||||||  ||| ||||||| |||||||| ||    
T  77114 taggggtgtttaaaaccgaaccaacccaatagaaaaaccaaaaaccaaatcaatccaaacctaaaccgcaaaaaacagcatttggtttggatgaattcgg 77213  T
Q  277 atgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattact 376  Q
    |||||||||||| ||||||||| ||||||||||| ||||||||||| |||||| |||||||||||||||||| ||| ||||||||||||  |||||||||    
T  77214 atgacttttgcaatgaaccgcgcggttcggtttggtttgcggtttgcatctcagcaaccgaaccaaaccaaaacaacccgcaagaataatgaatattact 77313  T
Q  377 taaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattct 462  Q
    ||||| |||||||||| |||||||||||| || ||||||| ||||| |||||||||||||||||||| |||||||  |||||||||    
T  77314 taaacatgtactagcctaattacatagcccaataataatcacttttgattcgatttttccattgttgcaccatcaaattcgattct 77399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 180 - 544
Target Start/End: Original strand, 25297732 - 25298096
Alignment:
Q  180 gggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttggatg 279  Q
    ||||||| |||||| || |||  ||| |||||||||| ||||||||  |||| |||  || ||||||||||| |||||||| ||  |||||||| |||||    
T  25297732 gggtgttcaaaaccgaaccaacccaatagaaaaatcgcaaactaaaccaatccaaactgaaaccgtaaaaaaccgcacttgattcggatgaattcggatg 25297831  T
Q  280 acttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattacttaa 379  Q
    ||||||||  ||||||||  ||||||||||| |||| |||||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||    
T  25297832 acttttgctttgaaccgcacggttcggtttggtttgtggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaagaataatgaatattacttaa 25297931  T
Q  380 acttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccatctcc 479  Q
    || ||||||||||||||||||||||  |||||||||| ||||| |||||||||||||||||||| ||||||| |||||||||||||| |||||||||||     
T  25297932 acatgtactagcccaattacatagctcaagaataatcgcttttgattcgatttttccattgttgcaccatcaggttcgattctaatttctttccatctct 25298031  T
Q  480 tttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgcctatgc 544  Q
    || |||| ||||||| |||||||||| |||  ||| ||||||||||||||||||||||| |||||    
T  25298032 ttcaatttatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcttatgc 25298096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 241 - 543
Target Start/End: Original strand, 44979312 - 44979614
Alignment:
Q  241 accgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaacc 340  Q
    |||| |||||| |||||||||||  |||||||| |||||| ||||||||||||||||| |||| | |||| ||||||||||| |||||| | ||||||||    
T  44979312 accgcaaaaaaccgcacttggttcggatgaattcggatgaattttgcactgaaccgcgcggtttgatttggtttgcggtttgcatctcagctaccgaacc 44979411  T
Q  341 aaaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattg 440  Q
    |||||||||||||||||||||||||  ||| |||||||||| ||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||    
T  44979412 aaaccaaaccaaaccgcaagaataatgaatgttacttaaacatgtactagcccaattacatagcccaggaataatctcttttgattcgatttttccattg 44979511  T
Q  441 ttgtaccatcacgttcgattctaattcctttccatctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgcct 540  Q
    ||| ||||| | |||| ||||||||||||||||||||| ||||||||||||||| |||||||||| ||| |||||||| ||||||||||| ||||||| |    
T  44979512 ttgcaccatgaggttcaattctaattcctttccatctcttttaattcatttccagtgatgaatttgtttccttttctttccaataatttgcttcatgctt 44979611  T
Q  541 atg 543  Q
    |||    
T  44979612 atg 44979614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 247 - 543
Target Start/End: Complemental strand, 11376421 - 11376130
Alignment:
Q  247 aaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaacca 346  Q
    ||||| |||||||||||  ||||||||  ||||||||||||||||||||||| ||||||||| | ||||| ||||| |||||| |||| |||||||||||    
T  11376421 aaaaaccgcacttggttcggatgaattcagatgacttttgcactgaaccgcgcggttcggttcggtttgcagtttgcatctcagcaactgaaccaaacca 11376322  T
Q  347 aaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtac 446  Q
         |||||||||||||   |||||||||||||| ||||||||| ||||| ||||||| |||||||||| ||||| |||||||||||||||||||| ||    
T  11376321 -----aaccgcaagaatactgaatattacttaaacatgtactagctcaattgcatagcccaagaataatcgcttttgattcgatttttccattgttgcac 11376227  T
Q  447 catcacgttcgattctaattcctttccatctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgcctatg 543  Q
    ||||| |||||||||||||||||||||||||| || |||||||||||| |||||||||| ||| |||| ||||||||||||||||||||||| ||||    
T  11376226 catcaggttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcctttacttcccaataatttgtttcatgcttatg 11376130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 275 - 543
Target Start/End: Complemental strand, 44035821 - 44035553
Alignment:
Q  275 ggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatatta 374  Q
    |||||||||||||||||||||||| ||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||||||||| |||||  |||||||    
T  44035821 ggatgacttttgcactgaaccgcgcggttcggtttggtttacggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaataatgaatatta 44035722  T
Q  375 cttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttcca 474  Q
    ||||||| ||||||||| || ||||||| |  |||||||||||||||| ||||||||||| |||||||| || |||| ||||||||||||||||||||||    
T  44035721 cttaaacatgtactagctcagttacataactcaagaataatctcttttgattcgattttttcattgttgcacgatcaagttcgattctaattcctttcca 44035622  T
Q  475 tctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgcctatg 543  Q
    |||| || |||||||||||| |||||||||| ||| |||| ||||| |||| |||||||| ||| ||||    
T  44035621 tctctttcaattcatttccagtgatgaatttgtttcctttacttccaaatattttgtttcttgcttatg 44035553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 177 - 543
Target Start/End: Original strand, 19936598 - 19936959
Alignment:
Q  177 taggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttgg 276  Q
    |||||||||| |||||| || |||  ||| ||||||| ||| ||| |||  |||| ||| ||| |||| |||||| |||||||||||  ||||||||  |    
T  19936598 taggggtgttcaaaaccgaaccaacccaatagaaaaaccgtgaaccaaaccaatccaaaccgaaaccgcaaaaaaccgcacttggttcggatgaattcag 19936697  T
Q  277 atgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattact 376  Q
    ||| ||||| |||||||| ||| ||||||||| | ||||| |||||||||||| |     |||||||||||||||||||||||||||||  |||||||||    
T  19936698 atgtctttttcactgaactgcgcggttcggttcggtttgcagtttgtatctcagc-----aaccaaaccaaaccaaaccgcaagaataatgaatattact 19936792  T
Q  377 taaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccatc 476  Q
    || || ||||||||| ||| ||||||||  ||||||||| | |||| ||||||||||| |||||||| ||||||| |||||||||||||| |||||||||    
T  19936793 tatacatgtactagctcaaatacatagctcaagaataatatattttgattcgattttttcattgttgcaccatcatgttcgattctaatttctttccatc 19936892  T
Q  477 tcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgcctatg 543  Q
    || || |||||||||||| || ||||||| ||| |||| ||||||||||||||||||||||| ||||    
T  19936893 tcattcaattcatttccagtgctgaatttgtttcctttacttcccaataatttgtttcatgcttatg 19936959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 300 - 543
Target Start/End: Original strand, 17916454 - 17916699
Alignment:
Q  300 ggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattac 399  Q
    ||||||||||| |||| |||||| |||||| ||||||| |||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||    
T  17916454 ggttcggtttggtttgtggtttgcatctcagcaaccgagccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattac 17916553  T
Q  400 atagcctaagaataatctcttttaattcgatttttccattgttgtaccatc--acgttcgattctaattcctttccatctcctttaattcatttccaatg 497  Q
    |||||  |||||||||||||||| ||||  |||||||||| ||| ||||||  | |||||||| ||||||||||||||||| || |||||||||||| ||    
T  17916554 atagctcaagaataatctcttttgattcattttttccattattgcaccatcagaggttcgattataattcctttccatctctttcaattcatttccagtg 17916653  T
Q  498 atgaatttattttcttttcttcccaataatttgtttcatgcctatg 543  Q
    |||||||| |||||||| ||||| ||||||||||||||||| ||||    
T  17916654 atgaatttgttttctttacttccaaataatttgtttcatgcttatg 17916699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 180 - 472
Target Start/End: Complemental strand, 18360407 - 18360115
Alignment:
Q  180 gggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttggatg 279  Q
    |||||||||||||| || |||  ||| ||||||| || ||||||||  |||| ||| ||| |    |||||| |||||||||||  ||| |||| | |||    
T  18360407 gggtgtttaaaaccgaaccaacccaatagaaaaaccgcaaactaaaccaatccaaaccgaaattccaaaaaaccgcacttggttcggataaattcgaatg 18360308  T
Q  280 acttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattacttaa 379  Q
    ||||||||| |||||| || ||||||||||| ||| | ||||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||    
T  18360307 acttttgcattgaaccacgcggttcggtttggtttacagtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaagaataatcaatattacttaa 18360208  T
Q  380 acttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttc 472  Q
    ||||||||||||||||||||||||||  | ||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||| |||||    
T  18360207 acttgtactagcccaattacatagcccgaaaataatctcttttgattcgatttttccattgttgcaccatcatgttcgattctaatttctttc 18360115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 223 - 543
Target Start/End: Complemental strand, 34910873 - 34910552
Alignment:
Q  223 aaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgag-----gttcggtttgatttgcg 317  Q
    |||||||| |||| | | || |||||||||| |||||||||  ||||||||  ||||||||||||| | ||||||| |     |||||||||| ||| ||    
T  34910873 aaattaatgtaaaccaaaactgtaaaaaatcacacttggttcggatgaattcagatgacttttgcaataaaccgcgcgtttcggttcggtttggtttacg 34910774  T
Q  318 gtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatct 417  Q
    ||||| |||| | |||||||| |||||||     ||||||||||||||  |||||||||||||| ||||||| ||||||||||||||| ||||||||| |    
T  34910773 gtttgaatctgagcaaccgaaacaaacca-----aaccgcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatat 34910679  T
Q  418 cttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccatctcctttaattcatttccaatgatgaatttattttcttttc- 516  Q
    ||||| |||||||||||||||||||| ||||||| ||||||||||||||| ||| ||| ||  | ||||||||| |  |||||||||| ||| ||||||     
T  34910678 cttttgattcgatttttccattgttgcaccatcaagttcgattctaattcgttttcatttctctcaattcattttctgtgatgaatttgtttccttttct 34910579  T
Q  517 ttcccaataatttgtttcatgcctatg 543  Q
    |||||||||||||||||||||| ||||    
T  34910578 ttcccaataatttgtttcatgcttatg 34910552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 414 - 543
Target Start/End: Complemental strand, 20420572 - 20420443
Alignment:
Q  414 atctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccatctcctttaattcatttccaatgatgaatttattttctt 513  Q
    ||||| |||||||||||||||||||||||| | ||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||  ||    
T  20420572 atctcctttaattcgatttttccattgttgcatcatcaggtttgattctaattcctttccatctccttcaattcatttccaatgatgaatttgtttcatt 20420473  T
Q  514 ttcttcccaataatttgtttcatgcctatg 543  Q
    ||||||||||||||||| ||||||| ||||    
T  20420472 ttcttcccaataatttgattcatgcttatg 20420443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 177 - 364
Target Start/End: Complemental strand, 9811926 - 9811739
Alignment:
Q  177 taggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttgg 276  Q
    |||||||||| |||||| || |||  ||| ||||||| || ||||  ||  |||| ||| ||| |||| |||||| |||||||||||  ||||| || ||    
T  9811926 taggggtgttcaaaaccgaaccaacccaatagaaaaaccgcaaaccgaaccaatccaaaccgaaaccgcaaaaaaccgcacttggttcggatgagttcgg 9811827  T
Q  277 atgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 364  Q
    |||||||||  ||||||||||| ||||||||| | ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  9811826 atgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 9811739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 176 - 351
Target Start/End: Complemental strand, 16579177 - 16579002
Alignment:
Q  176 ttaggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttg 275  Q
    ||||||||||| |||||| || |||  ||| ||||||| || ||||  ||  |||| ||| ||| |||| ||||||||||||||||||  ||||| || |    
T  16579177 ttaggggtgttcaaaaccgaaccaacccaatagaaaaaccgcaaaccgaaccaatccaaaccgaaaccgcaaaaaatcgcacttggttcggatgagttcg 16579078  T
Q  276 gatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaacca 351  Q
    ||||||||||  ||||||||||| ||||||||| | ||||||||||| |||||| |||| ||||||||||||||||    
T  16579077 gatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaactgaaccaaaccaaacca 16579002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 241 - 364
Target Start/End: Complemental strand, 20420900 - 20420777
Alignment:
Q  241 accgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaacc 340  Q
    |||| |||||| |||||||||||  ||||| || |||||||||||  ||||||||||| ||||||||| | ||||||||||| |||||| ||| ||||||    
T  20420900 accgcaaaaaaccgcacttggttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaacc 20420801  T
Q  341 aaaccaaaccaaaccgcaagaata 364  Q
    ||||||||||||||||||| ||||    
T  20420800 aaaccaaaccaaaccgcaaaaata 20420777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 241 - 364
Target Start/End: Original strand, 36412898 - 36413021
Alignment:
Q  241 accgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaacc 340  Q
    |||| |||||| |||||||||||  ||||| || |||||||||||  ||||||||| | ||||||||| | ||||||||||| |||||| ||| ||||||    
T  36412898 accgcaaaaaaccgcacttggttcggatgagttcggatgacttttagactgaaccgtgcggttcggttcggtttgcggtttgcatctcagcaatcgaacc 36412997  T
Q  341 aaaccaaaccaaaccgcaagaata 364  Q
    ||||||||||||||||||| ||||    
T  36412998 aaaccaaaccaaaccgcaaaaata 36413021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 275 - 365
Target Start/End: Original strand, 42785101 - 42785191
Alignment:
Q  275 ggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 365  Q
    |||||||||||||| |||||| || ||||||||||| ||||||||||| ||||||  ||||||||||||||||||||||||| ||||||||    
T  42785101 ggatgacttttgcattgaaccacgcggttcggtttggtttgcggtttgcatctcagaaaccgaaccaaaccaaaccaaaccgtaagaataa 42785191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 468 - 543
Target Start/End: Complemental strand, 18357589 - 18357514
Alignment:
Q  468 ctttccatctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgcctatg 543  Q
    |||||||||| ||| |||||||||||| |||||||||| |||  ||||||||||||||||||||||||||| ||||    
T  18357589 ctttccatcttcttcaattcatttccagtgatgaatttgtttcattttcttcccaataatttgtttcatgcttatg 18357514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 241 - 355
Target Start/End: Complemental strand, 41166739 - 41166625
Alignment:
Q  241 accgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaacc 340  Q
    ||||||||||| |||| ||||||| |||| |||  ||| |||||| |||| ||||||  |||| | |||| ||||||||||  || | | ||||||||||    
T  41166739 accgtaaaaaaccgcatttggtttggatgcattcagatcactttttcactcaaccgcatggtttgatttggtttgcggttttcattttaccaaccgaacc 41166640  T
Q  341 aaaccaaaccaaacc 355  Q
    |||||||||||||||    
T  41166639 aaaccaaaccaaacc 41166625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 175 - 359
Target Start/End: Complemental strand, 44086139 - 44085956
Alignment:
Q  175 tttaggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaattt 274  Q
    |||||| |||||||||| | ||||||  ||| ||||||| ||||||   |||||| | |||  || || | ||||||||||| ||||||| |||| | |     
T  44086139 tttaggtgtgtttaaaatcgaatcaacccaatagaaaaaccgtaaatcgaattaacccaaactgaaactgcaaaaaatcgcatttggttttgatgtaatc 44086040  T
Q  275 ggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaa 359  Q
     ||| | |||| | |||||||||  |||| |||||| |||| |||||  || ||| |||||||||||||||||||||||||||||    
T  44086039 agatta-ttttcctctgaaccgcatggtttggtttggtttgtggttttcatttcaccaaccgaaccaaaccaaaccaaaccgcaa 44085956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 177 - 543
Target Start/End: Complemental strand, 106645 - 106278
Alignment:
Q  177 taggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttgg 276  Q
    ||||||||||||||||| || |||  ||| |||||||| | |||| |||| |||| ||| | | |||| |||||| |||| ||||||  |||||||| ||    
T  106645 taggggtgtttaaaaccgaaccaacccaatagaaaaatagcaaaccaaatcaatccaaacctaaaccgcaaaaaaccgcatttggttcggatgaattcgg 106546  T
Q  277 atgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattact 376  Q
    |||||||||||| ||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||| |||||| ||||||||||||  |||||||||    
T  106545 atgacttttgcaatgaaccgcgcggttcggtttggtttgcggtttgcatctcaacaaccgaaccaaacccaaccaacccgcaagaataatgaatattact 106446  T
Q  377 taaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccatc 476  Q
    ||||| |||||||||| ||||||||||||||| |||||| |||||| |||||||||||||||||||| |||||||  |||||||||||||||||||||||    
T  106445 taaacatgtactagcctaattacatagcctaataataatttctttttattcgatttttccattgttgcaccatcaaattcgattctaattcctttccatc 106346  T
Q  477 tcctttaattcatttccaatgatgaatttattt-tcttttcttcccaataatttgtttcatgcctatg 543  Q
    || || |||||||||||| |||| ||||| |||   ||||||||| ||||||||||||||||| ||||    
T  106345 tctttcaattcatttccagtgataaatttgtttcatttttcttccgaataatttgtttcatgcttatg 106278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 337 - 543
Target Start/End: Complemental strand, 129092 - 128885
Alignment:
Q  337 aaccaaaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttcc 436  Q
    |||||||||||||||| ||||||||||||  |||||||||||||| |||||||||| |||||||||||| || ||||||||||||  |||||||||||||    
T  129092 aaccaaaccaaaccaacccgcaagaataatgaatattacttaaacatgtactagcctaattacatagcccaataataatctctttatattcgatttttcc 128993  T
Q  437 attgttgtaccatcacgttcgattctaattcctttccatctcctttaattcatttccaatgatgaatttattt-tcttttcttcccaataatttgtttca 535  Q
    ||||||| |||||||  ||||||||||||||||||||||||| || ||||||||| || |||| ||||| |||   ||||||||||||||||||||||||    
T  128992 attgttgcaccatcaaattcgattctaattcctttccatctctttcaattcattttcagtgataaatttgtttcatttttcttcccaataatttgtttca 128893  T
Q  536 tgcctatg 543  Q
    ||| ||||    
T  128892 tgcttatg 128885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 183; Significance: 1e-98; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 177 - 543
Target Start/End: Original strand, 33910249 - 33910615
Alignment:
Q  177 taggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttgg 276  Q
    |||||||||| |||||| || |||  ||| ||||||| || |||  |||  |||| ||| ||| | || |||||| |||||||||||  |||||||||||    
T  33910249 taggggtgttcaaaaccgaaccaacccaatagaaaaaccgcaaatcaaaccaatccaaaccgaaatcgcaaaaaaccgcacttggttcggatgaatttgg 33910348  T
Q  277 atgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattact 376  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||| ||||||  || | |||||||||||||||||||||||||||||  |||||||||    
T  33910349 atgacttttgcactgaaccgcgcggttcggtttggtttgcggtttgcatctcagtaatcaaaccaaaccaaaccaaaccgcaagaataatgaatattact 33910448  T
Q  377 taaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccatc 476  Q
    ||||  |||||||||||||||||||| | ||||||||||||||||| |||||||||||||| ||||| ||||||| ||||||||||||||| ||||||||    
T  33910449 taaatatgtactagcccaattacataacttaagaataatctcttttgattcgatttttccaatgttgcaccatcaggttcgattctaattcttttccatc 33910548  T
Q  477 tcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgcctatg 543  Q
    || || |||||||||| | |||||||||| ||| |||| ||||||||||||||||||||||| ||||    
T  33910549 tctttcaattcatttcaagtgatgaatttgtttcctttacttcccaataatttgtttcatgcttatg 33910615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 246 - 543
Target Start/End: Original strand, 39256177 - 39256474
Alignment:
Q  246 aaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaacc 345  Q
    |||||| || ||||||||  ||||||||||||||||||||||||||||| ||| |||| |||| | ||||||||||| |||||| |||||||||||||||    
T  39256177 aaaaaaccgtacttggttcggatgaatttggatgacttttgcactgaactgcgcggtttggttcggtttgcggtttgcatctcagcaaccgaaccaaacc 39256276  T
Q  346 aaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgta 445  Q
    ||||||||||||||||||||  |||||||||||||| |||||||||| |||||||||||  | ||||||||| |||  |||||||||||||||||||| |    
T  39256277 aaaccaaaccgcaagaataatgaatattacttaaacatgtactagccaaattacatagctcacgaataatctttttcgattcgatttttccattgttgca 39256376  T
Q  446 ccatcacgttcgattctaattcctttccatctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgcctatg 543  Q
    |||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||| ||| ||||  |||||||||||||||||||||| ||||    
T  39256377 ccatcaggttcgattctaattcctttccatctctttcaattcatttccaatgatgaatttgtttcctttatttcccaataatttgtttcatgcttatg 39256474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 241 - 543
Target Start/End: Original strand, 24910590 - 24910892
Alignment:
Q  241 accgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaacc 340  Q
    |||| |||||| |||||||||||  |||||||| |||||||||||||| ||||||| |  ||||||||   |||| |||||| |||||| ||||||||||    
T  24910590 accgcaaaaaaccgcacttggttcggatgaattcggatgacttttgcattgaaccgtgcagttcggttcagtttgtggtttgcatctcagcaaccgaacc 24910689  T
Q  341 aaaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattg 440  Q
    |||||||||||||||| ||||||||  |||||||||||||| ||||||||||||||||||||||  |||||||||||||||  |||||||||||| ||||    
T  24910690 aaaccaaaccaaaccggaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctctttcgattcgatttttcaattg 24910789  T
Q  441 ttgtaccatcacgttcgattctaattcctttccatctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgcct 540  Q
    ||| ||||||| |||||||||||||| |||||||||||  | |||||||||| | |||||||||| ||| |||| ||||||||||||||||||||||| |    
T  24910790 ttgcaccatcaggttcgattctaatttctttccatctctctcaattcatttcgagtgatgaatttgtttcctttacttcccaataatttgtttcatgctt 24910889  T
Q  541 atg 543  Q
    |||    
T  24910890 atg 24910892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 182 - 543
Target Start/End: Original strand, 16528970 - 16529330
Alignment:
Q  182 gtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttggatgac 281  Q
    ||||| |||||||||  || |||| |||||||  | ||||||||  |||| ||||||| || | ||||||  ||||||||||   ||||||| ||||| |    
T  16528970 gtgttcaaaaccaaactaactcaatagaaaaactgcaaactaaac-aatccaaatcgaaactgcaaaaaactgcacttggttcgtatgaattcggatggc 16529068  T
Q  282 ttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattacttaaac 381  Q
    ||||||||||||| |||  |||||||||  | ||||||||| |||||| ||||| ||||||||||||||||||||||||||||   ||||||||||||||    
T  16529069 ttttgcactgaacagcgcagttcggtttagtatgcggtttgcatctcagcaaccaaaccaaaccaaaccaaaccgcaagaatagtgaatattacttaaac 16529168  T
Q  382 ttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccatctcctt 481  Q
     |||| |||||||||||||||||| |||||||||||||||| |||||| |||| |||||||| ||||||| |||||||||||||||||||||||||| ||    
T  16529169 atgtaatagcccaattacatagcccaagaataatctcttttgattcgaatttttcattgttgcaccatcaggttcgattctaattcctttccatctcttt 16529268  T
Q  482 taattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgcctatg 543  Q
     ||||||||||||  ||| ||||| ||| |||||||||| ||||||||||||||||| ||||    
T  16529269 caattcatttccagggatcaatttgtttccttttcttccaaataatttgtttcatgcttatg 16529330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 174 - 543
Target Start/End: Original strand, 51251900 - 51252259
Alignment:
Q  174 ttttaggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatt 273  Q
    |||||||||||||||||||| || |||  ||| ||||||| || |||| | || |||| ||||| | |||| |||||| |||| ||||||  ||||||||    
T  51251900 ttttaggggtgtttaaaaccgaaccaatccaatagaaaaaccgcaaaccatatcaatccaaatctaaaccgcaaaaaaccgcatttggttcggatgaatt 51251999  T
Q  274 tggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatatt 373  Q
     |||||||||||||| |||||||||  |||||||||| ||||||||||| |||||| |||||          ||||||| ||||||||||||  ||||||    
T  51252000 cggatgacttttgcaatgaaccgcgcagttcggtttggtttgcggtttgcatctcagcaacc----------aaaccaacccgcaagaataatgaatatt 51252089  T
Q  374 acttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttcc 473  Q
    |||||||| |||||||||| |||||||||||| || ||||||||||||| |||||||||||||||||||| |||||||  ||||||||||||||||||||    
T  51252090 acttaaacatgtactagcctaattacatagccaaataataatctcttttgattcgatttttccattgttgcaccatcaaattcgattctaattcctttcc 51252189  T
Q  474 atctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgcctatg 543  Q
    ||||| || |||||||||||| | || ||||| |||  ||||||||||||||||||||||||||| ||||    
T  51252190 atctctttcaattcatttccagttataaatttgtttcattttcttcccaataatttgtttcatgcttatg 51252259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 275 - 543
Target Start/End: Complemental strand, 33474953 - 33474685
Alignment:
Q  275 ggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatatta 374  Q
    |||||||||||||||||||||||| ||||||||| | |||| | |||| |||||| |||||||||||||||||||||||| ||||||||||  |||||||    
T  33474953 ggatgacttttgcactgaaccgcgcggttcggttcggtttgtgatttgcatctcatcaaccgaaccaaaccaaaccaaactgcaagaataacgaatatta 33474854  T
Q  375 cttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttcca 474  Q
    ||||||  ||||||||||||||||||||||  |||||||||||||||| ||| ||||||| ||||||||   ||||| ||||||||||||||||||||||    
T  33474853 cttaaatatgtactagcccaattacatagctcaagaataatctcttttgatttgattttttcattgttgcgtcatcaggttcgattctaattcctttcca 33474754  T
Q  475 tctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgcctatg 543  Q
    |||| || |||||||||||| |||||||||| ||| |||| | ||||||||||||||||||||| ||||    
T  33474753 tctctttcaattcatttccagtgatgaatttgtttcctttacatcccaataatttgtttcatgcttatg 33474685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 176 - 543
Target Start/End: Complemental strand, 45692402 - 45692040
Alignment:
Q  176 ttaggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttg 275  Q
    |||||||||||||||| |||| |||   || |||||||||  |||  |||  |||| ||||||| || | ||||||  ||||||||||  ||||||||||    
T  45692402 ttaggggtgtttaaaatcaaaccaaccaaatagaaaaatcacaaatcaaaccaatccaaatcgaaacggcaaaaaactgcacttggttcggatgaatttg 45692303  T
Q  276 gatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattac 375  Q
    ||||||||||||||||||||||  ||||||||| | ||||||||||| |||||| ||||||||||||| ||||||     |||||||||| |||||||||    
T  45692302 gatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaacaaacc-----gcaagaataataaatattac 45692208  T
Q  376 ttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccat 475  Q
    |||||  |||||||| ||||||||||| |  |||||||||||||||| |||| |||||| |||||||| ||||| | |||||||||||||||||||||||    
T  45692207 ttaaatatgtactagtccaattacataactcaagaataatctcttttgattcaattttttcattgttgcaccattaggttcgattctaattcctttccat 45692108  T
Q  476 ctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgcctatg 543  Q
    ||| || ||||||||| ||  ||||||||||| | |||| ||||| ||||||||| ||||||| ||||    
T  45692107 ctctttcaattcatttacagagatgaatttatatcctttacttcctaataatttgcttcatgcttatg 45692040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 275 - 543
Target Start/End: Complemental strand, 32954586 - 32954323
Alignment:
Q  275 ggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatatta 374  Q
    |||||||||||||||| ||||||  ||||| ||| | || |||||||| |||||| ||||||||||||||||||||| |     |||||||  |||||||    
T  32954586 ggatgacttttgcactaaaccgcacggttccgttcggttcgcggtttgcatctcagcaaccgaaccaaaccaaaccata-----agaataatgaatatta 32954492  T
Q  375 cttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttcca 474  Q
    ||||||| ||||| ||||||||||||||||  ||||||||| |||||  |||||||||||||||||||| ||||||| |||| ||||||||| |||||||    
T  32954491 cttaaacatgtacaagcccaattacatagctcaagaataatttctttcgattcgatttttccattgttgcaccatcaggttcaattctaattactttcca 32954392  T
Q  475 tctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgcctatg 543  Q
     ||| || ||||||||| || |||||||||| ||| |||| ||||  ||||||||||||||||| ||||    
T  32954391 actctttcaattcattttcagtgatgaatttgtttcctttacttcataataatttgtttcatgcttatg 32954323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 254 - 543
Target Start/End: Original strand, 1160583 - 1160856
Alignment:
Q  254 gcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaa 353  Q
    |||||||||| |||||||||  ||||||||||||||||||||||  | ||||||| ||||||||||| | |||||| |||||||||||||||||||||||    
T  1160583 gcacttggttcagatgaattcagatgacttttgcactgaaccgcacgattcggttcgatttgcggtt-gcatctcagcaaccgaaccaaaccaaaccaaa 1160681  T
Q  354 ccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacg 453  Q
    ||||||||||||  ||||               |||||| |||||||||||  ||||||||||| |||  |||| ||||||||||||||| | ||||| |    
T  1160682 ccgcaagaataatgaata---------------ctagccaaattacatagctcaagaataatctttttcgattcaatttttccattgttgcaacatcagg 1160766  T
Q  454 ttcgattctaattcctttccatctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgcctatg 543  Q
    | ||||||||||||||||||||||| || |||||||||||| |||||| ||| ||| ||||  |||||||||||||||||||||| ||||    
T  1160767 tacgattctaattcctttccatctctttcaattcatttccagtgatgattttgtttcctttatttcccaataatttgtttcatgcttatg 1160856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 202 - 538
Target Start/End: Complemental strand, 44919112 - 44918790
Alignment:
Q  202 tcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatc-gcacttggtttagatgaatttggatgacttttgcactgaaccgcgag 300  Q
    |||| |||||||||| |||  |||| || | |||| || ||||||||||| | ||||||| ||| |||||||| |||| ||||||||||||||| ||| |    
T  44919112 tcaatagaaaaatcgcaaatcaaatcaacccaaattgaaaccgtaaaaaaaccgcacttgatttggatgaattcggataacttttgcactgaactgcgcg 44919013  T
Q  301 gttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattaca 400  Q
    ||| |||||| ||||||||||| |||||  |||||               | |||||||||||||  |||||||||||||| |||||||| |||||||||    
T  44919012 gtttggtttggtttgcggtttgcatctctgcaacc---------------agaccgcaagaataatgaatattacttaaacatgtactagtccaattaca 44918928  T
Q  401 tagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccatctcctttaattcatttccaatgatg 500  Q
    ||||  ||||||||||| |||| ||| ||||||||||||||||  |||||| ||||||||||||||| |||||||||| ||  ||||||||||| ||||     
T  44918927 tagctcaagaataatcttttttgatttgatttttccattgttgctccatcaagttcgattctaattcttttccatctctttcgattcatttccagtgatt 44918828  T
Q  501 aatttattttcttttcttcccaataatttgtttcatgc 538  Q
    ||||| ||| |||| |||||||||||||||||||||||    
T  44918827 aatttgtttcctttacttcccaataatttgtttcatgc 44918790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 243 - 459
Target Start/End: Complemental strand, 11899584 - 11899367
Alignment:
Q  243 cgtaaaaaatcgcacttggtttag-atgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaacca 341  Q
    |||||||||||| ||||| ||| | |||||||  ||||||||||||||| || |     ||| |||||||||||||||||| |||||| |||||||| ||    
T  11899584 cgtaaaaaatcgtacttgatttcggatgaattcagatgacttttgcactaaaacatacagtttggtttgatttgcggtttgcatctcagcaaccgaatca 11899485  T
Q  342 aaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgt 441  Q
    ||||||||||||||||||||||||  |||||||||||||  ||||||||| ||||||||||||  ||||||||||| |||| ||| ||||||||||||||    
T  11899484 aaccaaaccaaaccgcaagaataatgaatattacttaaatatgtactagctcaattacatagctcaagaataatcttttttgatttgatttttccattgt 11899385  T
Q  442 tgtaccatcacgttcgat 459  Q
    || ||||||| |||||||    
T  11899384 tgcaccatcatgttcgat 11899367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 407 - 538
Target Start/End: Complemental strand, 29389412 - 29389281
Alignment:
Q  407 aagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccatctcctttaattcatttccaatgatgaattta 506  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||| || || |||||||||  |||||| ||     
T  29389412 aagaataatctcttttaattcgatttttccattgttgcaccatcaggttcgattctaattcctctccatctctttcaactcatttccagggatgaacttg 29389313  T
Q  507 ttttcttttcttcccaataatttgtttcatgc 538  Q
    |||  ||| |||||||||||||||||||||||    
T  29389312 tttcttttacttcccaataatttgtttcatgc 29389281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 262 - 417
Target Start/End: Original strand, 6722380 - 6722529
Alignment:
Q  262 tttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaaga 361  Q
    ||||||||||||||||||||||||||| |||||   | |||||| || ||||||||||||| |||||| ||||||||||||||||||||     ||||||    
T  6722380 tttagatgaatttggatgacttttgcattgaactttgcggttcgattcgatttgcggtttgcatctcagcaaccgaaccaaaccaaacc-----gcaaga 6722474  T
Q  362 ataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatct 417  Q
     |||  |||||||||||||| ||||||  ||||||||||||||  |||||||||||    
T  6722475 -taatgaatattacttaaacatgtactgacccaattacatagctcaagaataatct 6722529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 275 - 364
Target Start/End: Complemental strand, 8211728 - 8211639
Alignment:
Q  275 ggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 364  Q
    |||||||||||  ||||||||||| ||||||||| | ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  8211728 ggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 8211639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 275 - 364
Target Start/End: Complemental strand, 20494183 - 20494094
Alignment:
Q  275 ggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 364  Q
    |||||||||||  ||||||||||| ||||||||| ||||||| ||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  20494183 ggatgacttttagactgaaccgcgcggttcggttcgatttgctgtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 20494094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 241 - 364
Target Start/End: Original strand, 29707683 - 29707801
Alignment:
Q  241 accgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaacc 340  Q
    |||| ||||||||||||||||||  ||||| || |||||||||||  ||||||||||  |||||||||||     ||||||| |||||| ||||||||||    
T  29707683 accgcaaaaaatcgcacttggttcggatgagttcggatgacttttagactgaaccgcacggttcggtttg-----cggtttgcatctcagcaaccgaacc 29707777  T
Q  341 aaaccaaaccaaaccgcaagaata 364  Q
    ||||||||||||||||||| ||||    
T  29707778 aaaccaaaccaaaccgcaaaaata 29707801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 275 - 364
Target Start/End: Original strand, 5154968 - 5155057
Alignment:
Q  275 ggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 364  Q
    |||||||||||  ||||||||||  ||||||||| | ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  5154968 ggatgacttttagactgaaccgcacggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 5155057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 275 - 333
Target Start/End: Complemental strand, 29390191 - 29390133
Alignment:
Q  275 ggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaa 333  Q
    |||||||||||||||||||||||| ||||||||| | ||||||||||| ||||||||||    
T  29390191 ggatgacttttgcactgaaccgcgcggttcggttcggtttgcggtttgcatctcaacaa 29390133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 359
Target Start/End: Original strand, 45949097 - 45949151
Alignment:
Q  305 ggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaa 359  Q
    ||||||||||||||||| ||| | | ||||||||||||||||||| |||||||||    
T  45949097 ggtttgatttgcggtttttattttaccaaccgaaccaaaccaaacaaaaccgcaa 45949151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 241 - 355
Target Start/End: Complemental strand, 17652312 - 17652198
Alignment:
Q  241 accgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaacc 340  Q
    |||| ||||||||||| ||| ||| |||| ||| |||| ||||||   || ||||||  ||||  |||||||||| |||||  || | | ||||||||||    
T  17652312 accgcaaaaaatcgcatttgatttggatgtattcggatcacttttttcctcaaccgcatggttttgtttgatttggggttttcattttaccaaccgaacc 17652213  T
Q  341 aaaccaaaccaaacc 355  Q
    |||||||||||||||    
T  17652212 aaaccaaaccaaacc 17652198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 359
Target Start/End: Complemental strand, 12974064 - 12974036
Alignment:
Q  331 caaccgaaccaaaccaaaccaaaccgcaa 359  Q
    |||||||||||||||||||||||||||||    
T  12974064 caaccgaaccaaaccaaaccaaaccgcaa 12974036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 174; Significance: 2e-93; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 177 - 538
Target Start/End: Complemental strand, 43429778 - 43429417
Alignment:
Q  177 taggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttgg 276  Q
    |||||||||| |||||| || |||  ||| ||||||| || |||| |||  |||| ||| ||| |||| |||||| |||||||||||  |||||||| ||    
T  43429778 taggggtgttcaaaaccgaaccaacccaatagaaaaaccgcaaaccaaaccaatccaaaccgaaaccgcaaaaaaccgcacttggttcggatgaattcgg 43429679  T
Q  277 atgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattact 376  Q
    |||||||||||||| ||||||  ||||||||| | ||||||||||| |||||| |||||||||||||||||||||||||||||||||||  | |||||||    
T  43429678 atgacttttgcactaaaccgcatggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaagaataatgactattact 43429579  T
Q  377 taaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccatc 476  Q
    ||||| |||||| | |||||||||||||  ||||| |||||||||| |||||||||||||||||||| ||||||| |||| |||||||||||||||||||    
T  43429578 taaacgtgtactcgtccaattacatagctcaagaaaaatctcttttgattcgatttttccattgttgcaccatcaggttcaattctaattcctttccatc 43429479  T
Q  477 tcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgc 538  Q
    || ||  |||||||||||||||||||||| ||| |||| ||| ||||||||| |||||||||    
T  43429478 tctttcgattcatttccaatgatgaatttgtttcctttactttccaataattagtttcatgc 43429417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 228 - 543
Target Start/End: Original strand, 24360819 - 24361132
Alignment:
Q  228 aatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatct 327  Q
    |||| ||| ||| |||| |||||| |||||||||||| |||||||| ||||||||||||||| ||||| |   |||||||| | ||  |||||||  |||    
T  24360819 aatccaaaccgaaaccgcaaaaaaccgcacttggtttggatgaattcggatgacttttgcacagaaccacacagttcggttcggtt--cggtttgcgtct 24360916  T
Q  328 caacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattc 427  Q
    || |||||||||||||||||||||||||||||||||||  | |||||||||||  ||||||||||||||||||||||  |||||||||| ||||| ||||    
T  24360917 cagcaaccgaaccaaaccaaaccaaaccgcaagaataatgactattacttaaatatgtactagcccaattacatagctcaagaataatcccttttgattc 24361016  T
Q  428 gatttttccattgttgtaccatcacgttcgattctaattcctttccatctcctttaattcatttccaatgatgaatttattttcttttcttcccaataat 527  Q
    ||||||| |||||||| ||||||| |||| |||||||||||||||||| || || |||||||||||| |||||||||| ||| |||| ||||||||||||    
T  24361017 gattttttcattgttgcaccatcaagttcaattctaattcctttccatttctttcaattcatttccagtgatgaatttgtttcctttacttcccaataat 24361116  T
Q  528 ttgtttcatgcctatg 543  Q
    ||||||||||| ||||    
T  24361117 ttgtttcatgcttatg 24361132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 176 - 494
Target Start/End: Original strand, 42910153 - 42910466
Alignment:
Q  176 ttaggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttg 275  Q
    ||||||||||| |||||| || |||  ||| ||||||| || |||| |||  |||| ||||||| || | |||||| |||||||||||  |||||||| |    
T  42910153 ttaggggtgttcaaaaccgaaccaacccaatagaaaaaccgcaaaccaaaccaatccaaatcgaaactgcaaaaaaccgcacttggttcggatgaattcg 42910252  T
Q  276 gatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattac 375  Q
    ||||||||||||||||||||| | ||||||||| | ||||||||||| |||||| ||||||||||     ||||||||||||||||||||  ||||||||    
T  42910253 gatgacttttgcactgaaccgtgcggttcggttcggtttgcggtttgcatctcagcaaccgaacc-----aaaccaaaccgcaagaataatgaatattac 42910347  T
Q  376 ttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccat 475  Q
    |||||| ||||||||||||||||||||||  |||||||||||||||| ||| |||||||||||||||| ||||||| || ||||||||||||||||||||    
T  42910348 ttaaacatgtactagcccaattacatagctcaagaataatctcttttgatttgatttttccattgttgcaccatcaggtccgattctaattcctttccat 42910447  T
Q  476 ctcctttaattcatttcca 494  Q
    ||| || ||||||||||||    
T  42910448 ctctttcaattcatttcca 42910466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 228 - 543
Target Start/End: Complemental strand, 22366999 - 22366694
Alignment:
Q  228 aatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatct 327  Q
    |||| ||||||| |||| |||||| ||||||||||| ||||||||| |||||||||||||||| ||||| | | || |||| | ||||||||||| ||||    
T  22366999 aatccaaatcgaaaccgcaaaaaaccgcacttggttcagatgaattcggatgacttttgcactaaaccgtgcgatttggttcggtttgcggtttgcatct 22366900  T
Q  328 caacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattc 427  Q
     | |||||          ||||||||||||||||||||  ||||||||| |||| ||||||||||||||||||||||  ||||||||||||||| |||||    
T  22366899 tagcaacc----------aaaccaaaccgcaagaataatgaatattactcaaacatgtactagcccaattacatagctcaagaataatctctttcaattc 22366810  T
Q  428 gatttttccattgttgtaccatcacgttcgattctaattcctttccatctcctttaattcatttccaatgatgaatttattttcttttcttcccaataat 527  Q
    | |||||||||||||| ||||||| |||||||||||||||||||||||||| || |||||||||||| |||||||||| ||| |||| ||||||||||||    
T  22366809 ggtttttccattgttgcaccatcaggttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcctttacttcccaataat 22366710  T
Q  528 ttgtttcatgcctatg 543  Q
    ||||||||||| ||||    
T  22366709 ttgtttcatgcttatg 22366694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 228 - 534
Target Start/End: Complemental strand, 10070112 - 10069816
Alignment:
Q  228 aatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatct 327  Q
    |||| ||| ||| |||| |||||| |||||||||||  |||||||| |||||||||||||||||||||||   |||| ||| | |||||| |||| ||||    
T  10070112 aatccaaaccgaaaccgcaaaaaaccgcacttggttcggatgaattcggatgacttttgcactgaaccgcacagttcagttcggtttgcgatttgcatct 10070013  T
Q  328 caacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattc 427  Q
    || |||||          ||||||||||||||||||||  ||||||||||||||||||||  |||||||||||||||| ||||||||||| |||| |||     
T  10070012 cagcaacc----------aaaccaaaccgcaagaataatcaatattacttaaacttgtaccggcccaattacatagcccaagaataatcttttttgattt 10069923  T
Q  428 gatttttccattgttgtaccatcacgttcgattctaattcctttccatctcctttaattcatttccaatgatgaatttattttcttttcttcccaataat 527  Q
    |||||||||||||||| ||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||    
T  10069922 gatttttccattgttgcaccatcaggtttgattctaattcctttccatctccttcaattcatttccaatgatgaatttgtttccttttcttcccaataat 10069823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 178 - 537
Target Start/End: Complemental strand, 32824195 - 32823846
Alignment:
Q  178 aggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttgga 277  Q
    |||||||||||||||| || |||  ||| ||||||| |  |||  |||| |||| ||||||| ||||||||||| |||||||||||| |||||||| |||    
T  32824195 aggggtgtttaaaaccgaaccaacccaatagaaaaaccacaaatcaaatcaatccaaatcgaaaccgtaaaaaaccgcacttggtttggatgaattcgga 32824096  T
Q  278 tgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattactt 377  Q
    || |||||||||||||||||  ||||||||| | ||||||||||| |||||| |||||          ||||||||||||| ||||||  ||||||||||    
T  32824095 tggcttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcaacc----------aaaccaaaccgcatgaataatgaatattactt 32824006  T
Q  378 aaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccatct 477  Q
    |||| ||||||||||||||||||||||  |||||||||||| ||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  32824005 aaacatgtactagcccaattacatagctcaagaataatctcctttgattcgatttttccattgttgcaccatcaggttcgattctaattcctttccatct 32823906  T
Q  478 cctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatg 537  Q
      || ||||||||  || |||||||||| |||  ||| ||| ||||||||||| ||||||    
T  32823905 atttcaattcattctcactgatgaatttgtttcatttactttccaataatttgcttcatg 32823846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 241 - 543
Target Start/End: Complemental strand, 13852852 - 13852552
Alignment:
Q  241 accgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaacc 340  Q
    |||| ||||||  ||||||||||  |||||||| |||||||||||||||||||||| | |||||||||   ||||||||||| |||||| |||| |||||    
T  13852852 accgcaaaaaacagcacttggttcggatgaattcggatgacttttgcactgaaccgagtggttcggttctgtttgcggtttgcatctcagcaactgaacc 13852753  T
Q  341 aaaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattg 440  Q
    |||||||||||||| ||||||||||  ||||||| |||||  ||||||| | ||||||||||||  |||||||||||||||| ||||||||||| |||||    
T  13852752 aaaccaaaccaaactgcaagaataatgaatattatttaaatatgtactaactcaattacatagctcaagaataatctcttttgattcgattttttcattg 13852653  T
Q  441 ttgtaccatcacgttcgattctaattcctttccatctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgcct 540  Q
    |  |||||||| |||||||| ||||||||||||||||| || ||||||||| || |||||||||| ||| |||| ||| ||||||||||||||||||| |    
T  13852652 t--taccatcaggttcgattataattcctttccatctctttcaattcatttacagtgatgaatttgtttcctttactttccaataatttgtttcatgctt 13852555  T
Q  541 atg 543  Q
    |||    
T  13852554 atg 13852552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 266 - 533
Target Start/End: Original strand, 31876208 - 31876470
Alignment:
Q  266 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 365  Q
    |||||||| |||||||||||||| ||||||| | |||||| |||| ||||||||||| |||||| |     ||||||||||||||||||||||| |||||    
T  31876208 gatgaattcggatgacttttgcaatgaaccgtgcggttcgatttggtttgcggtttgcatctcagc-----aaccaaaccaaaccaaaccgcaaaaataa 31876302  T
Q  366 gaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaat 465  Q
      |||||||||||||| |||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||    
T  31876303 tgaatattacttaaacatgtactagcccagttacatagctcaagaataatctcttttaattcgatttttccattgttgcaccatcagattcgattctaat 31876402  T
Q  466 tcctttccatctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgttt 533  Q
    || |||||||||| ||||||||||||||| |||||| ||| ||| |||| ||||| ||||||||||||    
T  31876403 tcttttccatctcttttaattcatttccagtgatgactttgtttcctttacttccaaataatttgttt 31876470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 177 - 536
Target Start/End: Original strand, 36921029 - 36921385
Alignment:
Q  177 taggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttgg 276  Q
    |||||||||| |||||| || |||  ||| ||||||| || |||| |||  |||| ||| ||| ||   |||||| |||||||||||  |||||||| ||    
T  36921029 taggggtgttcaaaaccgaaccaacccaatagaaaaaccgcaaaccaaaccaatccaaaccgaaactacaaaaaaccgcacttggttcggatgaattcgg 36921128  T
Q  277 atgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattact 376  Q
    || ||||||||| |||||| || ||||||||||| ||||| ||||| |||||| ||||||||||||||||||||     ||||||||||  |||||||||    
T  36921129 attacttttgcattgaaccacgcggttcggtttggtttgcagtttgcatctcagcaaccgaaccaaaccaaacc-----gcaagaataatgaatattact 36921223  T
Q  377 taaacttgtactagccc--aattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttcca 474  Q
    ||||| ||||||| |||  |||||||||||  |||||||||| ||||| ||||||||||| |||||||| ||||||| ||||||||||||||| ||||||    
T  36921224 taaacatgtactaacccccaattacatagctcaagaataatcgcttttgattcgattttttcattgttgcaccatcaggttcgattctaattcttttcca 36921323  T
Q  475 tctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcat 536  Q
    |||| || ||||||||| ||||||| ||||| |||  ||| |||||||||||||||||||||    
T  36921324 tctctttcaattcattttcaatgataaatttgtttcttttacttcccaataatttgtttcat 36921385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 175 - 459
Target Start/End: Original strand, 27054198 - 27054483
Alignment:
Q  175 tttaggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttag-atgaatt 273  Q
    |||||||||||| |||||| |||  |  ||| ||||||| || |||| |||  |||| ||| ||| ||||||||||| |||||||||||| | |||||||    
T  27054198 tttaggggtgttcaaaaccgaatgtacccaatagaaaaaccgcaaaccaaaccaatccaaaccgaaaccgtaaaaaaccgcacttggtttcggatgaatt 27054297  T
Q  274 tggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatatt 373  Q
      ||||||||||||||| ||||| | | || |||||| ||||||||||| || ||| ||| ||||||||||||||||||||| |||||||||  ||||||    
T  27054298 cagatgacttttgcactaaaccgtgcgatttggtttggtttgcggtttgcatatcagcaatcgaaccaaaccaaaccaaaccacaagaataatgaatatt 27054397  T
Q  374 acttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgat 459  Q
    |||||||  |||||||||||||||||||| |  |||||||||||||||| ||||||||||| |||||||| ||||||| |||||||    
T  27054398 acttaaatatgtactagcccaattacataactcaagaataatctcttttgattcgattttttcattgttgcaccatcatgttcgat 27054483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 246 - 450
Target Start/End: Original strand, 18672762 - 18672966
Alignment:
Q  246 aaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaacc 345  Q
    |||||| |||| || ||| ||||||||| |||||| ||||||| || ||||||  |||||||| | |||| |||||| |||||| |||||||||||||||    
T  18672762 aaaaaaccgcatttagttcagatgaattcggatgatttttgcattggaccgcgcagttcggttcggtttgtggtttgcatctcagcaaccgaaccaaacc 18672861  T
Q  346 aaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgta 445  Q
    |||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||  | |||||||||||||| ||| |||||||| ||||||| |    
T  18672862 aaaccaaaccgcaataataatcaatattacttaaacttgtactagcccaattacatagcacaggaataatctcttttgattagatttttctattgttgca 18672961  T
Q  446 ccatc 450  Q
    |||||    
T  18672962 ccatc 18672966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 228 - 543
Target Start/End: Complemental strand, 47903778 - 47903478
Alignment:
Q  228 aatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatct 327  Q
    |||||||| ||| |||| |||||| |||||||||||  |||||||| ||||||||||||||||||||||||  ||||| || | ||||||||||| ||||    
T  47903778 aatctaaaccgaaaccgcaaaaaaccgcacttggttcggatgaattcggatgacttttgcactgaaccgcgcagttcgtttcggtttgcggtttgcatct 47903679  T
Q  328 caacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattc 427  Q
    || ||||||||||||| ||| ||||||| |||||||||  ||||               |||||| |||||||||||  ||||||| | | |||  ||||    
T  47903678 cagcaaccgaaccaaaacaacccaaaccacaagaataatgaata---------------ctagccaaattacatagctcaagaatactatttttcgattc 47903594  T
Q  428 gatttttccattgttgtaccatcacgttcgattctaattcctttccatctcctttaattcatttccaatgatgaatttattttcttttcttcccaataat 527  Q
    ||||||| |||||||| ||||||| |||||||| |||||| ||||||| || || |||||||||||| |||||||||| ||| ||||  |||||||||||    
T  47903593 gattttttcattgttgcaccatcaggttcgattataattcatttccatatctttcaattcatttccagtgatgaatttgtttcctttatttcccaataat 47903494  T
Q  528 ttgtttcatgcctatg 543  Q
    ||||||||||| ||||    
T  47903493 ttgtttcatgcttatg 47903478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 241 - 537
Target Start/End: Original strand, 31982208 - 31982480
Alignment:
Q  241 accgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaacc 340  Q
    |||| ||||||  ||||||| ||  ||||||||  ||||||||||||||||||| ||| |||| |||||||||||||||||| |||| | |||||         
T  31982208 accgcaaaaaactgcacttgattcggatgaattcagatgacttttgcactgaactgcgcggtttggtttgatttgcggtttgcatcttagcaacc----- 31982302  T
Q  341 aaaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattg 440  Q
         |||||||||||||| |||||  ||||||||||||| |||||| ||||||||||||||||| |||||||||||||||| ||| |||||||||||||    
T  31982303 -----aaaccaaaccgcaaaaataatcaatattacttaaatttgtaccagcccaattacatagcccaagaataatctcttttgatttgatttttccattg 31982397  T
Q  441 ttgtaccatcacgttcgattctaattcctttccatctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatg 537  Q
    ||| |||||||  |||||||||||||||||              ||||||| || |||||||||| ||| |||||||||||||||||||||||||||    
T  31982398 ttgcaccatcaaattcgattctaattcctt--------------ttcattttcagtgatgaatttgtttccttttcttcccaataatttgtttcatg 31982480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 331 - 537
Target Start/End: Complemental strand, 48675568 - 48675362
Alignment:
Q  331 caaccgaaccaaaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgat 430  Q
    |||| ||||||||| ||| ||||||| |||||||| ||||||||||||||| |||| ||||| |||||||||||  || ||||| |||||||  || |||    
T  48675568 caactgaaccaaacaaaatcaaaccgtaagaataataaatattacttaaacatgtattagcctaattacatagctaaaaaataacctcttttggtttgat 48675469  T
Q  431 ttttccattgttgtaccatcacgttcgattctaattcctttccatctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttg 530  Q
    | ||||||||||| ||||||| ||| ||||||||||| |||||||||| || ||||||||| || |||||||||| ||| |||| ||||| |||||||||    
T  48675468 tattccattgttgcaccatcaggtttgattctaattcatttccatctctttgaattcattttcagtgatgaatttgtttcctttacttcctaataatttg 48675369  T
Q  531 tttcatg 537  Q
    |||||||    
T  48675368 tttcatg 48675362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 246 - 467
Target Start/End: Complemental strand, 5933159 - 5932944
Alignment:
Q  246 aaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatt-----tgcggtttgtatctcaacaaccgaacc 340  Q
    |||||| |||||||||||  ||| ||||  ||||||||||||||||||||||| ||||||||| | ||     |||||||||||||||| ||||||||||    
T  5933159 aaaaaaccgcacttggttcggataaattcagatgacttttgcactgaaccgcgcggttcggttcggttcggtttgcggtttgtatctcagcaaccgaacc 5933060  T
Q  341 aaaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattg 440  Q
    ||||||||||||| || ||||||||      | |||||||| ||||||||||||||||||||||  |||||||||||||     ||||||||||||||||    
T  5933059 aaaccaaaccaaatcgtaagaataa------tgacttaaacatgtactagcccaattacatagctcaagaataatctct-----ttcgatttttccattg 5932971  T
Q  441 ttgtaccatcacgttcgattctaattc 467  Q
    ||| |||||||  || |||||||||||    
T  5932970 ttgcaccatcagatttgattctaattc 5932944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 177 - 364
Target Start/End: Complemental strand, 47070214 - 47070027
Alignment:
Q  177 taggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttgg 276  Q
    |||||||||| ||||||||| |||  ||| ||||||| || ||||  ||  |||| ||| ||| |||| |||||| |||||||||||  ||||| || ||    
T  47070214 taggggtgttcaaaaccaaaccaacccaatagaaaaaccgcaaaccgaaccaatccaaaccgaaaccgcaaaaaaccgcacttggttcggatgagttcgg 47070115  T
Q  277 atgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 364  Q
    |||||||||  ||||||||||| ||||||||| | ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  47070114 atgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 47070027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 233 - 364
Target Start/End: Original strand, 3211735 - 3211866
Alignment:
Q  233 aaatcgataccgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaaca 332  Q
    ||||||| |||| |||||| |||||||||||  ||||| || |||||||||||  ||||||||||| ||||||||| | ||||||||||| |||||| ||    
T  3211735 aaatcgaaaccgcaaaaaaccgcacttggttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagca 3211834  T
Q  333 accgaaccaaaccaaaccaaaccgcaagaata 364  Q
    ||||||||||||||||||||||||||| ||||    
T  3211835 accgaaccaaaccaaaccaaaccgcaaaaata 3211866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 177 - 364
Target Start/End: Complemental strand, 10672365 - 10672178
Alignment:
Q  177 taggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttgg 276  Q
    |||||||||| ||||||||| |||  ||| ||||||| || ||||  ||  |||| ||| ||| |||| |||||| |||||||||||  ||||| || ||    
T  10672365 taggggtgttcaaaaccaaaccaacccaatagaaaaaccgcaaaccgaaccaatccaaaccgaaaccgcaaaaaaccgcacttggttcggatgagttcgg 10672266  T
Q  277 atgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 364  Q
    |||||||||  ||||||||| | ||||||||| | ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  10672265 atgacttttagactgaaccgtgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 10672178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 177 - 350
Target Start/End: Original strand, 8768203 - 8768376
Alignment:
Q  177 taggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttgg 276  Q
    |||||||||| |||||| || |||  ||| ||||||| || ||||  ||  |||| ||| ||| |||| |||||| |||||||||||  ||||| || ||    
T  8768203 taggggtgttcaaaaccgaaccaacccaatagaaaaaccgcaaaccgaaccaatccaaaccgaaaccgcaaaaaaccgcacttggttcggatgagttcgg 8768302  T
Q  277 atgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaacc 350  Q
    |||||||||  ||||||||||| ||||||||| | |||| |||||| |||||| ||||||||||||||||||||    
T  8768303 atgacttttagactgaaccgcgcggttcggttcggtttgtggtttgcatctcagcaaccgaaccaaaccaaacc 8768376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 177 - 345
Target Start/End: Original strand, 11205915 - 11206083
Alignment:
Q  177 taggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttgg 276  Q
    |||||||||| |||||| || |||  ||| ||||||| || ||||  ||  |||| ||| ||| |||| |||||| |||||||||||  ||||| || ||    
T  11205915 taggggtgttcaaaaccgaaccaacccaatagaaaaaccgcaaaccgaaccaatccaaaccgaaaccgcaaaaaaccgcacttggttcggatgagttcgg 11206014  T
Q  277 atgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaacc 345  Q
    |||||||||  ||||||||||| ||||||||| | ||||||||||| |||||| |||||||||||||||    
T  11206015 atgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaacc 11206083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 176 - 364
Target Start/End: Complemental strand, 12118147 - 12117959
Alignment:
Q  176 ttaggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttg 275  Q
    ||||||||||| |||||| || |||  ||| ||||||| || ||||  ||| || | ||| ||| || |||||||| | |||||||||  ||||| || |    
T  12118147 ttaggggtgttcaaaaccgaaccaacccaatagaaaaaccgcaaaccgaatcaacccaaaccgaaactgtaaaaaaccacacttggttcggatgagttcg 12118048  T
Q  276 gatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 364  Q
    ||||||||||  ||||||||||| ||||||||| | |||||| |||| |||||| ||||| ||||||||||||| ||||||||| ||||    
T  12118047 gatgacttttagactgaaccgcgcggttcggttcggtttgcgatttgcatctcagcaaccaaaccaaaccaaactaaaccgcaaaaata 12117959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 276 - 364
Target Start/End: Original strand, 47204093 - 47204181
Alignment:
Q  276 gatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 364  Q
    ||||||||||  ||||||||||| ||||||||| | ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  47204093 gatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 47204181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 472 - 543
Target Start/End: Original strand, 18672962 - 18673033
Alignment:
Q  472 ccatctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgcctatg 543  Q
    |||||||||| |||||||||||| |||||||||| ||| |||||||||| ||||||||||||||||| ||||    
T  18672962 ccatctccttcaattcatttccattgatgaatttgtttccttttcttccaaataatttgtttcatgcttatg 18673033  T

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Target: chr7; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 453 - 545
Target Start/End: Complemental strand, 36509024 - 36508932
Alignment:
Q  453 gttcgattctaattcctttccatctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgcctatgct 545  Q
    ||||||||||| || |||||||||||||| |||| |||| |  |||||||||| ||| ||||||| ||||||||||||||||| || ||||||    
T  36509024 gttcgattctatttgctttccatctccttcaattaattttcggtgatgaatttgtttccttttctccccaataatttgtttcaggcttatgct 36508932  T

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Target: chr7; HSP #25
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 246 - 405
Target Start/End: Complemental strand, 36509173 - 36509028
Alignment:
Q  246 aaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaacc 345  Q
    |||||| |||||||||||  ||||||||   |||||||||||| ||||||| | ||||||||||| ||||||||||||    || ||| |||||||||||    
T  36509173 aaaaaaccgcacttggttcggatgaattcatatgacttttgcattgaaccgtgcggttcggtttggtttgcggtttgt----cagcaatcgaaccaaacc 36509078  T
Q  346 aaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcc 405  Q
              ||||||||||  ||||||||||||| |||||| |||||||||||||||||    
T  36509077 ----------gcaagaataatcaatattacttaaatttgtacgagcccaattacatagcc 36509028  T

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Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 207 - 359
Target Start/End: Complemental strand, 40849477 - 40849325
Alignment:
Q  207 agaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcgg 306  Q
    ||||||| || ||||| || ||| | ||| ||| |||| |||||| | || ||| ||| |||| ||| |||| ||||||  ||| ||||||  |||| ||    
T  40849477 agaaaaaccgcaaactgaactaacccaaaccgaaaccgcaaaaaaccacatttgatttggatgtattcggatcacttttttactcaaccgcatggtttgg 40849378  T
Q  307 tttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaa 359  Q
    |||| ||||||||||  || | | |||||||||||||||||||||||||||||    
T  40849377 tttggtttgcggttttcattttaccaaccgaaccaaaccaaaccaaaccgcaa 40849325  T

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Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 228 - 303
Target Start/End: Complemental strand, 1335959 - 1335884
Alignment:
Q  228 aatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggtt 303  Q
    |||| ||||| | |||| |||||| |||||||||||| ||||||||  ||||||||||||||| ||||||| ||||    
T  1335959 aatccaaatcaaaaccgcaaaaaaccgcacttggtttggatgaattcagatgacttttgcactaaaccgcgcggtt 1335884  T

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Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 258 - 359
Target Start/End: Original strand, 524383 - 524484
Alignment:
Q  258 ttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgc 357  Q
    ||||||| |||| ||| |||| ||||||   || ||||||  |||| |||||| ||||||||||  || | | |||||||||||||||||||||||||||    
T  524383 ttggtttggatgtattcggatcacttttttgctcaaccgcatggtttggtttggtttgcggttttcattttaccaaccgaaccaaaccaaaccaaaccgc 524482  T
Q  358 aa 359  Q
    ||    
T  524483 aa 524484  T

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Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 359
Target Start/End: Complemental strand, 29628781 - 29628680
Alignment:
Q  258 ttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgc 357  Q
    ||||||| |||| ||| |||| ||||||   || ||||||  |||| |||||| |||||| |||  || | | |||||||||||||||||||||||||||    
T  29628781 ttggtttggatgtattcggatcacttttttccttaaccgcatggtttggtttggtttgcgattttcattttaccaaccgaaccaaaccaaaccaaaccgc 29628682  T
Q  358 aa 359  Q
    ||    
T  29628681 aa 29628680  T

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Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 359
Target Start/End: Original strand, 30079179 - 30079207
Alignment:
Q  331 caaccgaaccaaaccaaaccaaaccgcaa 359  Q
    |||||||||||||||||||||||||||||    
T  30079179 caaccgaaccaaaccaaaccaaaccgcaa 30079207  T

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Target: scaffold0029 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 246 - 543
Target Start/End: Original strand, 40116 - 40413
Alignment:
Q  246 aaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaacc 345  Q
    |||||| |||||||||||  |||||||| |||||||||||||||||||||||| || |||||||| |||| |||||  ||||||||||||||||||||||    
T  40116 aaaaaaccgcacttggttcggatgaattcggatgacttttgcactgaaccgcgtggctcggtttggtttgtggttttcatctcaacaaccgaaccaaacc 40215  T
Q  346 aaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgta 445  Q
    |||||||||| |||||||||  |||||||||||||| | ||||||||||||||||||||  ||||||||| |||||| |||| |||| |||||||||| |    
T  40216 aaaccaaaccacaagaataatgaatattacttaaacatctactagcccaattacatagctcaagaataatttcttttgattcaatttgtccattgttgca 40315  T
Q  446 ccatcacgttcgattctaattcctttccatctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcatgcctatg 543  Q
     ||||| |||| |||||||||  |||||||||| || |||||||||| | |||||||||||||| |||| |||||| ||||||||||| |||| ||||    
T  40316 acatcaggttccattctaatttatttccatctctttcaattcatttcaagtgatgaatttatttactttacttccccataatttgtttaatgcttatg 40413  T

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Target: scaffold0029; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 246 - 514
Target Start/End: Original strand, 47312 - 47580
Alignment:
Q  246 aaaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaacc 345  Q
    |||||| |||||||||||  |||||||| |||||||||||||||||||||||  || |||||||| |||| |||||  ||||||||||||||||||||||    
T  47312 aaaaaaccgcacttggttcggatgaattcggatgacttttgcactgaaccgcatggctcggtttggtttgtggttttcatctcaacaaccgaaccaaacc 47411  T
Q  346 aaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgta 445  Q
    |||||||||| |||||||||  |||||||||||||| | ||||||||||||||||||||  ||||||||| |||||| ||||||||| |||||||||| |    
T  47412 aaaccaaaccacaagaataatgaatattacttaaacatctactagcccaattacatagctcaagaataatttcttttgattcgatttgtccattgttgca 47511  T
Q  446 ccatcacgttcgattctaattcctttccatctcctttaattcatttccaatgatgaatttattttcttt 514  Q
     ||||| |||| |||||||||  |||||||||| || |||||||||| | |||||||||| ||| ||||    
T  47512 acatcaggttccattctaatttatttccatctctttcaattcatttcaagtgatgaatttgtttacttt 47580  T

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Target: scaffold0308 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 176 - 364
Target Start/End: Original strand, 5389 - 5577
Alignment:
Q  176 ttaggggtgtttaaaaccaaatcaagtcaacagaaaaatcgtaaactaaattaatctaaatcgataccgtaaaaaatcgcacttggtttagatgaatttg 275  Q
    ||||||||||| |||||| || |||  ||| ||||||| || ||||  ||  || ||||| ||| |||| |||||| |||| ||||||  ||||| || |    
T  5389 ttaggggtgttcaaaaccgaaccaacccaatagaaaaaccgcaaaccgaaccaacctaaaccgaaaccgcaaaaaaccgcatttggttcggatgagttcg 5488  T
Q  276 gatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 364  Q
     |||||||||  ||||||||||| ||||||||| | ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  5489 aatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 5577  T

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Target: scaffold0204 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 247 - 359
Target Start/End: Complemental strand, 26439 - 26327
Alignment:
Q  247 aaaaatcgcacttggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaacca 346  Q
    ||||| |||| || |||| |||| ||| |||| ||||||   || ||||||  |||| |||||| ||||||||||  || | | ||||||||||||||||    
T  26439 aaaaaccgcatttagtttggatgtattcggatcacttttttgctcaaccgcatggtttggtttggtttgcggttttcattttaccaaccgaaccaaacca 26340  T
Q  347 aaccaaaccgcaa 359  Q
    ||| |||||||||    
T  26339 aacaaaaccgcaa 26327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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