View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13224_low_2 (Length: 382)
Name: NF13224_low_2
Description: NF13224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13224_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 17 - 370
Target Start/End: Original strand, 2041174 - 2041527
Alignment:
| Q |
17 |
tcaatatgcatcaactgatcaagtgtgcagtgaggcaagactttctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaa |
116 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2041174 |
tcaatatgcatcaactggtcaagtgtgcagtgaggcaagattctctcaagcatatcatgatcaacatgactaacatctccaaggtattttacattatcaa |
2041273 |
T |
|
| Q |
117 |
tagctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacaggattcctttgaaacaaaagcagtgatgatgatggcttctt |
216 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2041274 |
tacctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacaggattcctttgaaacaaaagcaccgatgatgatggcttctt |
2041373 |
T |
|
| Q |
217 |
tctcgcagatacttcatcccttctcatcgtaatagcaagtttccttcgaaacaaaagcagtggatcgaaaacaaaggaacaaaaactcaatgagtaaaag |
316 |
Q |
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||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2041374 |
tctcgcagatacttcgtcccttctcatcgtaatagctagattccttcgaaacaaaagcagtggatcgaaaacaaaggaacaaaaactcaatgagtaaaag |
2041473 |
T |
|
| Q |
317 |
tattagatatgtttttcactgcaaccctaatggattttaacctatatatagtat |
370 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2041474 |
tattagatatgtttttcactgcaaccctaatggcttttaacctatatatagtat |
2041527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 1352483 - 1352250
Alignment:
| Q |
17 |
tcaatatgcatcaactgatcaagtgtgcagtgaggcaagactttctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaa |
116 |
Q |
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||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1352483 |
tcaatatgcatcaactgttcaagtgtgcagtgaggcaagattctctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaa |
1352384 |
T |
|
| Q |
117 |
tagctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacaggattcctttgaaacaaaagcagtgatgatgatggcttctt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
1352383 |
tagctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacaggattcctttgaaacaaaagcaccgatgatgatggcttcct |
1352284 |
T |
|
| Q |
217 |
tctcgcagatacttcatcccttctcatcgtaata |
250 |
Q |
| |
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||||||||||| |||||| ||||||||| ||||| |
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| T |
1352283 |
tctcgcagatatttcatctcttctcatcataata |
1352250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 17 - 177
Target Start/End: Complemental strand, 1357604 - 1357444
Alignment:
| Q |
17 |
tcaatatgcatcaactgatcaagtgtgcagtgaggcaagactttctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaa |
116 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1357604 |
tcaatatgcatcaactgttcaagtgtgcagtgaggcaagattctctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaa |
1357505 |
T |
|
| Q |
117 |
tagctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacagg |
177 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
1357504 |
tagctttctcaacacaaagatcaaccaaacatgtttgatcctttctcttcatcataacagg |
1357444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 1364434 - 1364328
Alignment:
| Q |
17 |
tcaatatgcatcaactgatcaagtgtgcagtgaggcaagactttctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaa |
116 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1364434 |
tcaatatgcatcaactgttcaagtgtgcagtgaggcaagattctctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaa |
1364335 |
T |
|
| Q |
117 |
tagcttt |
123 |
Q |
| |
|
||||||| |
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|
| T |
1364334 |
tagcttt |
1364328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 161; Significance: 9e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 36717516 - 36717295
Alignment:
| Q |
17 |
tcaatatgcatcaactgatcaagtgtgcagtgaggcaagactttctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36717516 |
tcaatatgcatcaactgatcaagtgtgcagtgaggcaagattctctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaa |
36717417 |
T |
|
| Q |
117 |
tagctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacaggattcctttgaaacaaaagcagtgatgatgatggcttctt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||| |
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|
| T |
36717416 |
tagctttctcaacacaaagatcaaccaaagatgtttgatcctttctcttcatcataacaggattcctttgaaaca------------acgatggcttctt |
36717329 |
T |
|
| Q |
217 |
tctcgcagatacttcatcccttctcatcgtaata |
250 |
Q |
| |
|
||| ||||||| |||||||||||||||| ||||| |
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|
| T |
36717328 |
tcttgcagatatttcatcccttctcatcataata |
36717295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 35 - 171
Target Start/End: Original strand, 24620494 - 24620630
Alignment:
| Q |
35 |
tcaagtgtgcagtgaggcaagactttctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaatagctttctcaacacaaa |
134 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24620494 |
tcaagtgtgcagtgaggcaagattcactcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaatagctttctcaacacaaa |
24620593 |
T |
|
| Q |
135 |
gatcaaccaaaggtgtttgatcctttcttttcatcat |
171 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||| |
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|
| T |
24620594 |
gatcaaccaaatatgtttgatcctttctcttcatcat |
24620630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 18180126 - 18180249
Alignment:
| Q |
20 |
atatgcatcaactgatcaagtgtgcagtgaggcaagactttctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaatag |
119 |
Q |
| |
|
|||||| ||||||| |||||||||||||| ||||||| | ||||||| ||||||||||||| ||| ||||| |||||||||| ||| |||||| |||| |
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|
| T |
18180126 |
atatgcgtcaactggtcaagtgtgcagtgtggcaagattcgttcaagcagatgatgatcaacaggaccaacatttccaaggtatcttaaattatctatag |
18180225 |
T |
|
| Q |
120 |
ctttctcaacacaaagatcaacca |
143 |
Q |
| |
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|| | | ||||||||||||||||| |
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|
| T |
18180226 |
ctgtttgaacacaaagatcaacca |
18180249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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