View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13225_low_1 (Length: 587)
Name: NF13225_low_1
Description: NF13225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13225_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 19 - 585
Target Start/End: Original strand, 30277370 - 30277936
Alignment:
| Q |
19 |
ttatgtaaatctagatttgctgcttccttgagctcttgaagttcatcacacagatgtttgatgccctgtcatcatcattattaaaccaaaacatatatta |
118 |
Q |
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| T |
30277370 |
ttatgtaaatctagatttgctgcttccttgagctcttgaagttcatcacacagatgtttgatgccctgtcatcatcattattaagccaaaacatatatta |
30277469 |
T |
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| Q |
119 |
tgaaacatgttgaagtgatgattatgttatttataaaagaaaatgaattatatatgaaagtatacccttccagtgatggattcaatatcaagtttggcat |
218 |
Q |
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| T |
30277470 |
tgaaacatgttgaagtgatgattatgttatttataaaataaaatgaattatatatgaaagtatacccttcctgtgatggattcaatatctagtttggcat |
30277569 |
T |
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| Q |
219 |
tgtcatcaggttgatcaatactgttattagaattagaaagtgagaggacggaatccacgtcgtcggagctcggctctgaagagtgtatcgagtttcgagg |
318 |
Q |
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| T |
30277570 |
tgtcatcaggtcgatcaatactgttattagaattagaaagtgagaggacggaaaccacgtcgtcggagctcggctctgaagagtgtatcgagtttcgagg |
30277669 |
T |
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| Q |
319 |
ctccgggagtgagtggtctctgaaccggaacctgggagcagatgaagattccatttgcatattagcaatgannnnnnnggtgttaatgaaaagtgaagaa |
418 |
Q |
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| T |
30277670 |
ctccgggagtgagtggtctctgaaccggaacctgggagcagatgaagattccatttgcatattagcaatgatttttttggtgttaatgaaaagtgaagaa |
30277769 |
T |
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| Q |
419 |
agaaattcattatatggttttttgaaggttctgttcctaggttgttttataagacatgggtatttccgctgaggtttatttcattgtaagaatcaatact |
518 |
Q |
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| T |
30277770 |
agaaattcattatatggttttttgaaggttctgttcctaggttgttttataagacatgggtatttccgctgaggcttatttcattgtaagaatcaatact |
30277869 |
T |
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| Q |
519 |
tgttcattgatatattcgtcaattaacaactgcttttgttttatattttgcatgtacatgtcctttg |
585 |
Q |
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| T |
30277870 |
tgttcattgatatattcgtcaattaacaactgcttttgttttatattttgcatgtacatgtcctttg |
30277936 |
T |
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