View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13225_low_3 (Length: 274)
Name: NF13225_low_3
Description: NF13225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13225_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 40059911 - 40059668
Alignment:
| Q |
18 |
ataaaatttcttggaaacttactatatacgtatactttttcgatttgaattttcttaagaaaagggaaaaaccttacataagttttccaaaaatattata |
117 |
Q |
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| T |
40059911 |
ataaaatttctgggaaacttactatatacgtatactttttcgatttgaattttcttaagaaaagggaaaaaccttacataagttttccaaaaatattata |
40059812 |
T |
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| Q |
118 |
caaacataaaaagctttatataagtttttcnnnnnnnttatacaaaccagataattgtatgtatgtttttcgtgaaaatttagtacacctgaaaagttaa |
217 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40059811 |
caaacataaaaagctttatataagtttttcaaaaaaattatacaaaccagataattgtatgtatgtttttcgtgaaaatttagtacacctgaaaagttaa |
40059712 |
T |
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| Q |
218 |
aaagactttttcggtttgtattcaaatactttctttctctgctc |
261 |
Q |
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| T |
40059711 |
aaagactttttcggtttgtattcaaatactttctttctctgctc |
40059668 |
T |
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