View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13226_high_10 (Length: 335)
Name: NF13226_high_10
Description: NF13226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13226_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 19 - 325
Target Start/End: Complemental strand, 44848887 - 44848582
Alignment:
| Q |
19 |
ttcttcaccattttggccccagtagatggctatgccaccagcataggaggttctaacaagagtgaggaaaagaaaaagtgacaaggtatgagaattcttt |
118 |
Q |
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| T |
44848887 |
ttcttcaccattttggccccagtagatggctatgccaccagcataggaggttctaacaagagtgaggaaaagaaaaagtgacaaggtatgagaattcttt |
44848788 |
T |
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| Q |
119 |
gccatctttgtgaatgtctggggttgttgtgacttgtgaatgattactctttgcacttgtgatatttatactgtgaatgggttgtattcacaccttgacg |
218 |
Q |
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| T |
44848787 |
gccatctttgtgaatgtctggggttgttgtgacttgtgaatgattactctttgcacttgtgatatttatactgtgaatgggttgtattcacaccttgacg |
44848688 |
T |
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| Q |
219 |
taatctaataatattttacactagcttccaattatatctaaataaaatatacatgtacatatgttttgccaagtaataatataatagtgatactataatg |
318 |
Q |
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| T |
44848687 |
taatctaataatattttacactagcttccaattatatctaaat-aaatatacatgttcatatgttttgccaagtaataatataatagtgatactataatg |
44848589 |
T |
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| Q |
319 |
acctatg |
325 |
Q |
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| T |
44848588 |
acctatg |
44848582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 132
Target Start/End: Complemental strand, 44837790 - 44837678
Alignment:
| Q |
26 |
ccattttggccccagtagatggctatgccaccagcataggaggttctaacaagagtgaggaa---aagaaaaagtgac---aaggtatgagaattctttg |
119 |
Q |
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| T |
44837790 |
ccattttggccccaatagattgctatgccaccagcatgggaagttgcaactagagtgaggaatagaagaataagagacaaaaaggtgtgagagttttttg |
44837691 |
T |
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| Q |
120 |
ccatctttgtgaa |
132 |
Q |
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| T |
44837690 |
ccatctttgtgaa |
44837678 |
T |
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