View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13226_high_2 (Length: 687)

Name: NF13226_high_2
Description: NF13226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13226_high_2
NF13226_high_2
[»] chr2 (1 HSPs)
chr2 (13-668)||(41089634-41090303)


Alignment Details
Target: chr2 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 13 - 668
Target Start/End: Complemental strand, 41090303 - 41089634
Alignment:
Q  13 agcagagagtttggcagccgaggatcgaaatcccaaatgaatgttgctggtattcataaacaaaaacatgtgtagtctatagatctgccaattcaatgca 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41090303 agcaaagagtttggcagccgaggatcgaaatcccaaatgaatgttgctgctattcataaacaaaaacatgtgtagtctatagatctgcgaattcaatgca 41090204  T
Q  113 gctaggaagaagtcagcaaaacaatgaatatatatgccaaaaatggtttcttggccttatctctccttccacatccttgtcattgatctggaagggatta 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41090203 gctaggaagaagtcagcaaaacaatgaatatatatgccaaaaatggtttcttggccttatctctccttccacatccttgtcattgatctggaagggatta 41090104  T
Q  213 atttaaagcatt------------gtttataaatcattcatatttccaagtatttttagacgttgatcaaatggaaacaccctaccacatatgccaacat 300  Q
    ||||||||||||            |||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  41090103 atttaaagcattttcataagcattgtttataaatcattcatatttcgaagtatttttagacgttgagcaaatagaaacaccctaccacatatgccaacat 41090004  T
Q  301 aaatgtgatcgttaacatttattcnnnnnnnnnnnnn--gtgattgtgaccaagaggaagctatttttagcaaaagagaaaactatttttacgttattga 398  Q
    ||||||||||||||||||||||||               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41090003 aaatgtgatcgttaacatttattcaaaaaaaaaaaaaaagtgattgtgaccaagaggaagctatttttagcaaaagagaaaactatttttacgttattga 41089904  T
Q  399 ttcggtctattctcttcagttacttgttacaagcacaagcccccacttttgaatgatattaattcaatagaaagctgtgattctgctaaattaagtaaat 498  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41089903 ttcggtctattctcttctgttacttgttacaagcacaagcccccacttttgaatgatattaattcaatagaaagctgtgatgctgctaaattaagtaaat 41089804  T
Q  499 aaattgaaaagttaaatatgagaaatgttggatcatgatatcgaattatttcaaaagtaggaaatttgtcttaatttagtaaagtagtttatatgacgtt 598  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  41089803 aaattgaaaacttaaatatgagaaatgttggatcatgatatcgtattatttcaaaagtaggaaatttgtcttaatttagtaaagtagtttatatgacatt 41089704  T
Q  599 atatgatgagatggtaaatcacatcttgatctaacgatccatagtcagaaaccgatggcagataggatcc 668  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41089703 atatgatgagatggtaaatcacatcttgatctaacgatccatagtcagaaaccgatggcagataggatcc 41089634  T

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