View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13226_high_6 (Length: 464)
Name: NF13226_high_6
Description: NF13226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13226_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-113; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 11 - 277
Target Start/End: Original strand, 37498594 - 37498861
Alignment:
| Q |
11 |
cacagacacaaacattgacatatcaacatttaaaataatatgaaaa-aatgacacaatttagtataatcatatgtgttggtatcgcgtcggtgttagaca |
109 |
Q |
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| T |
37498594 |
cacagacacaaacattgacacatcaacattgaaaataatatgaaaaaaatgacacaatttagtataatcatatgtgttggtgtcgcgtcggtgtcaaaca |
37498693 |
T |
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| Q |
110 |
ttgacacatgtttgacaccaagatatggctaatccgtgtagtgtttgttctcatacgtgacatgtgacttttatcttcaaatatcaagacaaataataaa |
209 |
Q |
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| T |
37498694 |
tcgacacatgtttgacacaaagacatggctaattcgagtagcgtttgtgctcatacgtgacatgtgacttttatcttcaaatatcaagacaaataataaa |
37498793 |
T |
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| Q |
210 |
atattgtcttaggttggtggcacaattctaaaatattgtaaacccaaaactttttgtgataatgaata |
277 |
Q |
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| T |
37498794 |
atattgtcttaggttggtggcacaattctaaaatattgtaaacccaaagctttttgtgataatgaata |
37498861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 269 - 350
Target Start/End: Original strand, 37499057 - 37499138
Alignment:
| Q |
269 |
taatgaatatagtgtaatggatttgagttgagaaaatgtgtttgttgataaggactaggtgcaactagctttacttagaaga |
350 |
Q |
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| T |
37499057 |
taataaatataatctaatggatttgagttgagaaaatgtgtttgttgataaggactaggtgcaactagctttacttagaaga |
37499138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 186 - 427
Target Start/End: Original strand, 37497266 - 37497506
Alignment:
| Q |
186 |
tcaaatatcaagacaaataataaaatattgtcttaggttggtggcacaatt-ctaaaatatt-gtaaacccaaaactttttgtgataatgaatatagtgt |
283 |
Q |
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| T |
37497266 |
tcaaatatcaaaacaaacagaaaaatattct-ttaggttggtggcacaattgctaaaatatttgtaaaccctaagctctctgtgacaaggaatcaaatct |
37497364 |
T |
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| Q |
284 |
aatggatttgagttgagaaaatgtgtttgttgataaggactaggtgcaactagctttacttagaagacatatccgatgtaggtagtatatttaactagcc |
383 |
Q |
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| T |
37497365 |
aatggatttgagttaagaaaacat--ttgttgataaggactaggtggagttaactttacttggcagacatatatggtatagttagtagatgcaactagcc |
37497462 |
T |
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| Q |
384 |
ttagctaatagacatatctgatgtagttagcaattacatataga |
427 |
Q |
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| T |
37497463 |
ttagttaatagacatatctggtgtagttatcaattgcagataga |
37497506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 393 - 447
Target Start/End: Original strand, 37499139 - 37499193
Alignment:
| Q |
393 |
agacatatctgatgtagttagcaattacatatagatgaaaatagttgttataact |
447 |
Q |
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| T |
37499139 |
agacatatctgatgtagttagcaattacatatagacgaaagtagttgttataact |
37499193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 13427583 - 13427622
Alignment:
| Q |
42 |
aaaataatatgaaaaaatgacacaatttagtataatcata |
81 |
Q |
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| T |
13427583 |
aaaataatttgaaaaaatgacataatttagtataatcata |
13427622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 8160436 - 8160484
Alignment:
| Q |
55 |
aaaatgacacaatttagtataatcatatgtgttggtatcgcgtcggtgt |
103 |
Q |
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| T |
8160436 |
aaaattacataatttagtgtaattatatgtgttggtatcgtgtcggtgt |
8160484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 109
Target Start/End: Original strand, 43368099 - 43368153
Alignment:
| Q |
55 |
aaaatgacacaatttagtataatcatatgtgttggtatcgcgtcggtgttagaca |
109 |
Q |
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| T |
43368099 |
aaaatgacacagtttaatatgatcatatgtgttggtgtcgtgtcggtgtcagaca |
43368153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 2648582 - 2648537
Alignment:
| Q |
53 |
aaaaaatgacacaatttagtataatcatatgtgttggtatcgcgtc |
98 |
Q |
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| T |
2648582 |
aaaaaatgacaaaatttaatgtaatcatatgtgttggtgtcgcgtc |
2648537 |
T |
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