View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13226_high_7 (Length: 417)
Name: NF13226_high_7
Description: NF13226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13226_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 18 - 414
Target Start/End: Original strand, 42270160 - 42270556
Alignment:
| Q |
18 |
attataaagtaaaactagcagccctaaacaccgtagtagcaaacttaagccaaacccatgctggcccatcaacttatataataattacccacgaacgtta |
117 |
Q |
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| T |
42270160 |
attataaagtaaaactagcagccctaaacaccgtagtagcaaacttaagccaaacccatgctggcccatcaacttatataataattacccacgaacgtta |
42270259 |
T |
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| Q |
118 |
gtggaaaaactcggttgcatattttattgtctcccctataattgttataacctacaaatacttatacgtcacttaaatttgagcaatctcatccataaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42270260 |
gtggaaaaactcggttgcatattttattgtctcccctataattgttataacctacaaatacttatacgtcacttaaatttgagcaatctcatccataaat |
42270359 |
T |
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| Q |
218 |
tcccaccccacaaggccacaacaacgattaaagaaacaaattaagagagattatacatacatatacactcctacctaggtccattccatcaattaaagga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
42270360 |
tcccaccccacaaggccacaacaacgattaaagaaacaaattaagagagattatacatacatatacactcctacttaggtccattccaccaattaaagga |
42270459 |
T |
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| Q |
318 |
atcacaaacaagaagagaaaaataaaatagctagagagaaatacataaagatgagtgaagaatgtggtggaaacactattgctacctatgctactcc |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
42270460 |
atcacaaacaagaagagaaaaataaaatagctagagagaaatacataaagatgagtgaagaatgtggtggaaacactattgctacctctactactcc |
42270556 |
T |
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