View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13226_high_9 (Length: 354)
Name: NF13226_high_9
Description: NF13226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13226_high_9 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 51 - 354
Target Start/End: Complemental strand, 45288055 - 45287755
Alignment:
| Q |
51 |
accaaaattgtattgttcttattcataattgtataattgattttgtgtttcatatcgctgtaaatttataagtcgcttcttcaattatatgattgagtta |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45288055 |
accaaaattgtattgttcttattcataattgtataattgattttgtgtttcatatcactgtaaatttataagtcgcttcttcaattatatgattgagtta |
45287956 |
T |
|
| Q |
151 |
actacatattgaagaaaatatgcaaaatgaatataaattcatggccctgtttaaataattnnnnnnnnnnnnnnnnncactacacgggagacttgcaaaa |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
45287955 |
actacatattgaagaaaatatgcaaaatgaatataaattcatggccctgtttaaataat--aaaaaaaaatgaaaaacactacacgggagacgtgcaaaa |
45287858 |
T |
|
| Q |
251 |
tctccctatggacaatgtattttcagtcttccactctcaataaatatacaaacactccgtattttgcaatactaacctctaacaaatcaatatttcttat |
350 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
45287857 |
tcttcctatggacaatgtattttcagtcttccactctcaat-aatatacaaacactccgtattttgcaatactaacctcaaacaaatcaatattttttat |
45287759 |
T |
|
| Q |
351 |
acaa |
354 |
Q |
| |
|
|||| |
|
|
| T |
45287758 |
acaa |
45287755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 131 - 353
Target Start/End: Complemental strand, 45287708 - 45287489
Alignment:
| Q |
131 |
tcaattatatgattgagttaactacatattgaagaaaatatgcaaaatgaatataaattcatggccctgtttaaataattnnnnnnnnnnnnnnnnncac |
230 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||| | ||| |
|
|
| T |
45287708 |
tcaattatatgattgagttaactaaatattgaagaaaatatgcaaaatagatataaattcatggccctgaataaataaat--aaaaacaatgtaaaacac |
45287611 |
T |
|
| Q |
231 |
tacacgggagacttgcaaaatctccctatggacaatgtattttcagtcttccactctcaata--aatatacaaacactccgtattttgcaatactaacct |
328 |
Q |
| |
|
||||| |||| | | |||||||| ||| || | | |||||||||||||||||||||||| || ||||||||||||||| |||||| |||| ||||||| |
|
|
| T |
45287610 |
tacacaggaggc-tacaaaatcttcctctgaatagtgtattttcagtcttccactctcattaataatatacaaacactc--tatttttcaatgctaacct |
45287514 |
T |
|
| Q |
329 |
ctaacaaatcaatatttcttataca |
353 |
Q |
| |
|
| ||||||||||||| ||||||||| |
|
|
| T |
45287513 |
caaacaaatcaatatgtcttataca |
45287489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 51 - 354
Target Start/End: Original strand, 31608742 - 31609038
Alignment:
| Q |
51 |
accaaaattgtattgttcttattcataattgtataattgattttgtgtttcatatcgctgtaaatttataagtcgcttcttcaattatatgattgagtta |
150 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31608742 |
accaaaattgt--tgttcttattcataattgtataattgattttgtgtttcatatcactgtaaatttataagtcgcttcttcaattatatgattgagtta |
31608839 |
T |
|
| Q |
151 |
actacatattgaagaaaatatgcaaaatgaatataaattcatggccctgtttaaataattnnnnnnnnnnnnnnnnncactacacgggagacttgcaaaa |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
31608840 |
actacatattgaagaaaatatgcaaaatgaatataaattcatggccctgtttaaataat--aaaaaaaaatgaaaaacactacacgggtgacttgcaaaa |
31608937 |
T |
|
| Q |
251 |
tctccctatggacaatgtattttcagtcttccactctcaataaatatacaaacactccgtattttgcaatactaacctctaacaaatcaatatttcttat |
350 |
Q |
| |
|
| | |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
31608938 |
tattcctatggacaatgtattttcag--ttccactctcaat-aatatacaaacactccgtattttgcaatactaacctcaaacaaatcaatatttcttat |
31609034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 131 - 208
Target Start/End: Original strand, 31609086 - 31609163
Alignment:
| Q |
131 |
tcaattatatgattgagttaactacatattgaagaaaatatgcaaaatgaatataaattcatggccctgtttaaataa |
208 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||| ||||||| |
|
|
| T |
31609086 |
tcaattatatgattgagttaactaaatattgaagaaaatatgaaaaatagatataaattcatggccctgaataaataa |
31609163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 343
Target Start/End: Original strand, 31609181 - 31609295
Alignment:
| Q |
228 |
cactacacgggagacttgcaaaatctccctatggacaatgtattttcagtcttccactctcaata--aatatacaaacactccgtattttgcaatactaa |
325 |
Q |
| |
|
||||||||||||| || |||||||| ||| |||| | |||||||||||||||||||||||| || ||||||||| ||||| |||||| |||| |||| |
|
|
| T |
31609181 |
cactacacgggaggcta-caaaatcttcctctggatagtgtattttcagtcttccactctcattaataatatacaatcactc--tatttttcaatgctaa |
31609277 |
T |
|
| Q |
326 |
cctctaacaaatcaatat |
343 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
31609278 |
tctcaaacaaatcaatat |
31609295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 343
Target Start/End: Complemental strand, 12630690 - 12630600
Alignment:
| Q |
253 |
tccctatggacaatgtattttcagtcttccactctcaata--aatatacaaacactccgtattttgcaatactaacctctaacaaatcaatat |
343 |
Q |
| |
|
||||| |||| | |||||||||||||||||||||||| || ||||||||||||||| ||| || |||| |||||||| ||||||||||||| |
|
|
| T |
12630690 |
tccctctggatagtgtattttcagtcttccactctcattaataatatacaaacactc--tatatttcaatgctaacctcaaacaaatcaatat |
12630600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University