View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13226_low_1 (Length: 927)

Name: NF13226_low_1
Description: NF13226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13226_low_1
NF13226_low_1
[»] chr7 (33 HSPs)
chr7 (7-909)||(35308257-35309158)
chr7 (682-821)||(33834267-33834406)
chr7 (687-789)||(44874479-44874581)
chr7 (681-821)||(6001539-6001679)
chr7 (681-829)||(25620211-25620359)
chr7 (727-821)||(3519829-3519923)
chr7 (682-821)||(1596669-1596808)
chr7 (681-779)||(20305365-20305467)
chr7 (831-895)||(1596723-1596787)
chr7 (831-895)||(40746157-40746221)
chr7 (682-813)||(21861370-21861501)
chr7 (687-818)||(31892233-31892364)
chr7 (681-828)||(36277088-36277235)
chr7 (857-895)||(3519929-3519967)
chr7 (857-895)||(36277116-36277154)
chr7 (831-893)||(38843204-38843266)
chr7 (727-821)||(40746137-40746230)
chr7 (681-821)||(2404278-2404417)
chr7 (831-895)||(3519850-3519914)
chr7 (831-895)||(21861424-21861488)
chr7 (857-909)||(25620292-25620344)
chr7 (681-821)||(29469680-29469820)
chr7 (681-796)||(38127373-38127489)
chr7 (856-895)||(2404298-2404337)
chr7 (840-895)||(4886468-4886523)
chr7 (730-821)||(31485528-31485619)
chr7 (857-896)||(33834347-33834386)
chr7 (857-895)||(2315151-2315189)
chr7 (857-895)||(29469761-29469799)
chr7 (764-813)||(2315138-2315187)
chr7 (727-800)||(3519929-3520002)
chr7 (768-829)||(48243155-48243216)
chr7 (681-813)||(48661431-48661564)
[»] chr1 (27 HSPs)
chr1 (691-829)||(17412417-17412555)
chr1 (682-821)||(4112644-4112783)
chr1 (681-821)||(27413422-27413562)
chr1 (682-818)||(7307797-7307933)
chr1 (681-821)||(35772104-35772244)
chr1 (681-800)||(4098293-4098412)
chr1 (682-821)||(38668201-38668340)
chr1 (709-813)||(369734-369839)
chr1 (857-909)||(38668281-38668333)
chr1 (682-821)||(2859496-2859635)
chr1 (710-821)||(25713262-25713373)
chr1 (857-895)||(369788-369826)
chr1 (857-895)||(2859517-2859555)
chr1 (831-885)||(8223447-8223501)
chr1 (857-895)||(39348242-39348280)
chr1 (764-821)||(8870793-8870850)
chr1 (832-895)||(25713289-25713352)
chr1 (681-821)||(38733226-38733362)
chr1 (857-895)||(4112896-4112934)
chr1 (857-895)||(12325422-12325460)
chr1 (857-895)||(12376563-12376601)
chr1 (764-821)||(4112875-4112932)
chr1 (764-813)||(12325409-12325458)
chr1 (764-813)||(12376550-12376599)
chr1 (764-829)||(35892214-35892279)
chr1 (691-776)||(40524789-40524874)
chr1 (764-825)||(51459805-51459866)
[»] chr5 (36 HSPs)
chr5 (681-826)||(6919293-6919438)
chr5 (681-818)||(95373-95510)
chr5 (682-819)||(32908824-32908960)
chr5 (831-895)||(41666882-41666946)
chr5 (682-821)||(9368671-9368810)
chr5 (687-813)||(18333577-18333702)
chr5 (857-895)||(38731727-38731765)
chr5 (704-821)||(13700694-13700811)
chr5 (681-821)||(24269974-24270115)
chr5 (681-821)||(24346605-24346746)
chr5 (681-829)||(15480397-15480545)
chr5 (831-895)||(24269995-24270059)
chr5 (831-895)||(24346626-24346690)
chr5 (681-821)||(43117722-43117861)
chr5 (840-895)||(6415811-6415866)
chr5 (857-895)||(95391-95429)
chr5 (857-895)||(6919319-6919357)
chr5 (857-895)||(8081239-8081277)
chr5 (764-818)||(15590096-15590150)
chr5 (857-895)||(18885383-18885421)
chr5 (857-895)||(24531755-24531793)
chr5 (727-821)||(41666861-41666955)
chr5 (764-821)||(8081218-8081275)
chr5 (728-821)||(17352538-17352631)
chr5 (712-821)||(33337342-33337451)
chr5 (681-813)||(17150345-17150477)
chr5 (681-813)||(24531674-24531806)
chr5 (681-779)||(6413568-6413666)
chr5 (764-818)||(11896022-11896076)
chr5 (857-895)||(15480478-15480516)
chr5 (857-895)||(15590094-15590132)
chr5 (831-893)||(17352561-17352623)
chr5 (857-895)||(18333589-18333627)
chr5 (735-821)||(18885356-18885442)
chr5 (727-821)||(26137213-26137307)
chr5 (857-891)||(33337367-33337401)
[»] chr3 (24 HSPs)
chr3 (681-821)||(4155399-4155539)
chr3 (684-821)||(34992684-34992821)
chr3 (680-779)||(37246764-37246863)
chr3 (831-904)||(13574801-13574874)
chr3 (680-813)||(20327726-20327859)
chr3 (831-895)||(4155454-4155518)
chr3 (682-813)||(13574797-13574929)
chr3 (831-895)||(16239722-16239786)
chr3 (831-895)||(34992736-34992800)
chr3 (764-819)||(29215695-29215749)
chr3 (691-821)||(19954322-19954451)
chr3 (831-895)||(20327739-20327803)
chr3 (727-818)||(16239713-16239804)
chr3 (764-819)||(31317389-31317444)
chr3 (857-896)||(49629762-49629801)
chr3 (857-895)||(19954342-19954380)
chr3 (857-895)||(21808837-21808875)
chr3 (831-909)||(22729623-22729701)
chr3 (687-821)||(35038298-35038431)
chr3 (857-895)||(35038319-35038357)
chr3 (857-895)||(39683393-39683431)
chr3 (764-813)||(22729651-22729700)
chr3 (764-821)||(39683372-39683429)
chr3 (728-821)||(52724090-52724183)
[»] scaffold0519 (2 HSPs)
scaffold0519 (682-821)||(1992-2131)
scaffold0519 (831-895)||(2046-2110)
[»] chr8 (34 HSPs)
chr8 (682-821)||(11232298-11232437)
chr8 (681-821)||(41790733-41790873)
chr8 (682-818)||(3157431-3157567)
chr8 (681-821)||(8084202-8084342)
chr8 (831-895)||(11232319-11232383)
chr8 (727-829)||(39052633-39052735)
chr8 (681-821)||(20094664-20094804)
chr8 (681-813)||(20301336-20301468)
chr8 (681-813)||(21087968-21088100)
chr8 (831-895)||(41790788-41790852)
chr8 (682-829)||(5932045-5932192)
chr8 (687-828)||(18004193-18004332)
chr8 (727-821)||(39052798-39052892)
chr8 (717-818)||(3157116-3157217)
chr8 (831-895)||(3157134-3157198)
chr8 (857-909)||(3157435-3157487)
chr8 (831-895)||(39960087-39960151)
chr8 (857-895)||(8084283-8084321)
chr8 (848-894)||(15797134-15797180)
chr8 (857-895)||(20094685-20094723)
chr8 (682-779)||(7669495-7669592)
chr8 (831-895)||(18004219-18004283)
chr8 (831-895)||(35682906-35682970)
chr8 (685-800)||(35682906-35683021)
chr8 (831-909)||(5589851-5589929)
chr8 (857-895)||(20301417-20301455)
chr8 (857-895)||(21088049-21088087)
chr8 (857-895)||(29006012-29006050)
chr8 (857-895)||(39052662-39052700)
chr8 (857-895)||(39052819-39052857)
chr8 (727-821)||(39960078-39960171)
chr8 (764-813)||(5589852-5589901)
chr8 (832-909)||(5932060-5932137)
chr8 (728-813)||(8716237-8716322)
[»] chr4 (24 HSPs)
chr4 (681-829)||(6218279-6218427)
chr4 (681-800)||(35819018-35819137)
chr4 (681-818)||(28245633-28245770)
chr4 (851-895)||(27634206-27634250)
chr4 (710-821)||(5398315-5398425)
chr4 (682-813)||(35796854-35796985)
chr4 (684-818)||(21750149-21750283)
chr4 (682-771)||(32002399-32002487)
chr4 (831-895)||(28245651-28245715)
chr4 (831-895)||(35788790-35788854)
chr4 (831-895)||(35819018-35819082)
chr4 (831-895)||(50543455-50543519)
chr4 (681-813)||(50543442-50543576)
chr4 (680-800)||(4645716-4645836)
chr4 (831-895)||(35796867-35796931)
chr4 (682-829)||(11036607-11036754)
chr4 (681-828)||(40717303-40717450)
chr4 (727-821)||(5398579-5398673)
chr4 (857-895)||(5398600-5398638)
chr4 (857-895)||(6218360-6218398)
chr4 (857-895)||(21646392-21646430)
chr4 (691-821)||(27634185-27634315)
chr4 (751-813)||(43743129-43743191)
chr4 (857-895)||(52559725-52559763)
[»] chr2 (26 HSPs)
chr2 (681-821)||(2029844-2029984)
chr2 (681-821)||(16419342-16419482)
chr2 (681-821)||(33606158-33606298)
chr2 (681-821)||(15124652-15124792)
chr2 (691-819)||(16533397-16533525)
chr2 (691-818)||(44404033-44404162)
chr2 (831-895)||(5711564-5711628)
chr2 (710-821)||(37812372-37812483)
chr2 (840-895)||(44404051-44404106)
chr2 (831-895)||(14466300-14466364)
chr2 (831-895)||(15124673-15124737)
chr2 (831-895)||(16419397-16419461)
chr2 (851-895)||(37812393-37812437)
chr2 (851-895)||(40149126-40149170)
chr2 (718-821)||(5711543-5711646)
chr2 (682-813)||(14466287-14466418)
chr2 (857-895)||(2029925-2029963)
chr2 (682-818)||(36352033-36352167)
chr2 (748-800)||(33381078-33381130)
chr2 (680-790)||(7748068-7748179)
chr2 (727-818)||(17525206-17525297)
chr2 (857-904)||(17525215-17525262)
chr2 (681-821)||(93226-93363)
chr2 (857-895)||(16533468-16533506)
chr2 (751-813)||(36063291-36063353)
chr2 (833-894)||(93245-93306)
[»] chr6 (20 HSPs)
chr6 (682-821)||(13353277-13353416)
chr6 (682-821)||(33796402-33796541)
chr6 (831-895)||(4868702-4868766)
chr6 (681-821)||(12330048-12330188)
chr6 (681-777)||(30849315-30849411)
chr6 (682-821)||(33494615-33494754)
chr6 (688-818)||(6542815-6542945)
chr6 (691-821)||(17147764-17147894)
chr6 (681-818)||(6400727-6400863)
chr6 (831-895)||(3680142-3680206)
chr6 (831-895)||(13353331-13353395)
chr6 (831-895)||(33796456-33796520)
chr6 (682-821)||(3680088-3680226)
chr6 (727-821)||(4868681-4868775)
chr6 (857-895)||(6400745-6400783)
chr6 (708-813)||(20830615-20830720)
chr6 (764-821)||(34345555-34345612)
chr6 (831-895)||(17147785-17147849)
chr6 (851-895)||(33494689-33494733)
chr6 (710-779)||(7638759-7638828)
[»] scaffold0366 (4 HSPs)
scaffold0366 (691-818)||(14488-14617)
scaffold0366 (840-895)||(14544-14599)
scaffold0366 (691-818)||(10822-10951)
scaffold0366 (846-895)||(10884-10933)
[»] scaffold0092 (2 HSPs)
scaffold0092 (681-817)||(5730-5866)
scaffold0092 (831-895)||(5785-5850)
[»] scaffold0048 (2 HSPs)
scaffold0048 (857-895)||(81997-82035)
scaffold0048 (764-828)||(81999-82063)
[»] scaffold0459 (2 HSPs)
scaffold0459 (691-818)||(13181-13310)
scaffold0459 (846-895)||(13243-13292)
[»] scaffold0692 (2 HSPs)
scaffold0692 (681-811)||(5633-5763)
scaffold0692 (857-895)||(5644-5682)
[»] scaffold0542 (1 HSPs)
scaffold0542 (705-779)||(5728-5802)


Alignment Details
Target: chr7 (Bit Score: 807; Significance: 0; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 807; E-Value: 0
Query Start/End: Original strand, 7 - 909
Target Start/End: Complemental strand, 35309158 - 35308257
Alignment:
Q  7 gtagcataggtaactaattaatattgtagctaggtatagcaatttctgttgttacactgtagaggtcaaggtagcatgaatacagtgagctatcattgtc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35309158 gtagcataggtaactaattaatattgtagctaggtatagcaatttctgttgttacactgtagaggtcaaggtagcatgaatacagtgagctatcattgtc 35309059  T
Q  107 ttttgaatgatgaattgaggatttgatttttcccatgaatatgatggaagtttgtggcacttgtctgtcttgttgcgccgtttgctgtccaatttaattt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35309058 ttttgaatgatgaattgaggatttgatttttcccatgaatatgatggaagtttgtggcacttgtctgtcttgttgcgccgtttgctgtccaatttaattt 35308959  T
Q  207 tccattttctataagctggctaagttgcctaatctagtagactgaaattcaatatcactatttttgtgtgaccaacttcatgcaattgaggtatattagt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35308958 tccattttctataagctggctaagttgcctaatctagtagactgaaattcaatatcactatttttgtgtgaccaacttcatgcaattgaggtatattagt 35308859  T
Q  307 catatcgcaaaataatggattttcattctagtactttctcctctaagttaagggacaaagggaattggtattacaggtagatggtctgactatatgtgtg 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35308858 catatcgcaaaataatggattttcattctagtactttctcctctaagttaagggacaaagggaattggtattacaggtagatggtctgactatatgtgtg 35308759  T
Q  407 ttttgatggttaatattgacaggatctagttgacctttgactatgactcctcacatgtgttatccattataatttgcttctttatcttaatttgtcgtct 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35308758 ttttgatggttaatattgacaggatctagttgacctttgactatgactcctcacatgtgttatccattataatttgcttctttatcttaatttgtcgtct 35308659  T
Q  507 tcatcaaaagactaatatggtactactattgataatagttaagatatagaataccaattgttatatacaaattattttgagcatacaatggttatatttt 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35308658 tcatcaaaagactaatatggtactactattgataatagttaagatatagaataccaattgttatatacaaattattttgagcatacaatggttatatttt 35308559  T
Q  607 gtgtgtggatttaatttccttcgcgtaaattgtgtagattaatattgtggggttgtgttggatctaaacatcctgatttttaagatggtatcaaagtctc 706  Q
    ||||||||||||||| || |||| ||| | | |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||| ||||||    
T  35308558 gtgtgtggatttaatatcattcgtgtacaat-tgtagattaatattgtggggttgtgttggatctaaacatgacgatttttaagatggtatcagagtctc 35308460  T
Q  707 tttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaacccaataatgttggtcgtgatagggt 806  Q
    |||||||| |||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35308459 tttaagatttattagatcatctgctattaggttttcgctatcgggtcacccatcgtctatgtccacgaaccaaacccaataatgttggttgtgatagggt 35308360  T
Q  807 gtgttaacagtcccatatcagattggtttccgttatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtgaatgagtgtgct 906  Q
    |||||||||||| |||||||||||||||| || ||||  ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |    
T  35308359 gtgttaacagtctcatatcagattggttttcgctatcaggtcatccaccgtttatgtccacgaaccaagcccaatagtgctggtcgtgaatgagtgtgtt 35308260  T
Q  907 aag 909  Q
    |||    
T  35308259 aag 35308257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 682 - 821
Target Start/End: Original strand, 33834267 - 33834406
Alignment:
Q  682 atttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaac 781  Q
    |||| ||||||||||||| || ||||  |||||| |||||  || ||||||| |||||||| ||| || | |||||| | | |||||||||||||||| |    
T  33834267 atttctaagatggtatcagagcctctccaagatccattgggccacctgctatcaggttttccctatcgggccacccaccatttatgtccacgaaccaagc 33834366  T
Q  782 ccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    |||||| ||||||||||||  ||||| ||||| |||||||    
T  33834367 ccaatagtgttggtcgtgaaggggtgggttaagagtccca 33834406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 687 - 789
Target Start/End: Complemental strand, 44874581 - 44874479
Alignment:
Q  687 taagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaacccaat 786  Q
    ||||||||||||| |||||||| |||||| ||||| ||| ||||||| |||||| | | | || |||||||||| | |||||| ||||||||||||||||    
T  44874581 taagatggtatcagagtctcttcaagatccattgggtcacctgctatcaggtttccacaatcgggtcacccatcatttatgtctacgaaccaaacccaat 44874482  T
Q  787 aat 789  Q
    |||    
T  44874481 aat 44874479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 681 - 821
Target Start/End: Complemental strand, 6001679 - 6001539
Alignment:
Q  681 gatttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaa 780  Q
    ||||| ||||||||||||| || ||||| || || |||| | ||||||||||| |||||| | ||| |||||| |||| | | ||| ||||||||||||     
T  6001679 gatttctaagatggtatcagagcctcttcaaaatttattaggtcatctgctatcaggtttcccctatcgagtctcccaccatttatttccacgaaccaag 6001580  T
Q  781 cccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    || ||||||| |||||||||  | ||||||||| |||||||    
T  6001579 cctaataatgctggtcgtgagggagtgtgttaagagtccca 6001539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 681 - 829
Target Start/End: Original strand, 25620211 - 25620359
Alignment:
Q  681 gatttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaa 780  Q
    ||||| ||||||||||||| || ||||  |||||| |||||  || ||||||| |||||| |||||  | | |||||| | | ||||||||||||||||     
T  25620211 gatttctaagatggtatcagagcctctccaagatccattgggccacctgctatcaggtttccgctattgggccacccaccatttatgtccacgaaccaag 25620310  T
Q  781 cccaataatgttggtcgtgatagggtgtgttaacagtcccatatcagat 829  Q
    ||||||| ||||||||||||  | ||||||||| ||||| | |||||||    
T  25620311 cccaatagtgttggtcgtgaaggtgtgtgttaagagtcctacatcagat 25620359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 727 - 821
Target Start/End: Complemental strand, 3519923 - 3519829
Alignment:
Q  727 ctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaacccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    ||||||| |||||| ||||| || | |||||| | | |||||||||||||||| |||||||||| |||||||||  ||||||||||| |||||||    
T  3519923 ctgctatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaagcccaataatgctggtcgtgagggggtgtgttaagagtccca 3519829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 682 - 821
Target Start/End: Original strand, 1596669 - 1596808
Alignment:
Q  682 atttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaac 781  Q
    |||| ||||||||||||| || ||||  |||||| |||||  ||  || ||| |||||| ||||| || | |||||| | | |||||||||||||||| |    
T  1596669 atttctaagatggtatcagagcctctccaagatccattgggccacatgttatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaagc 1596768  T
Q  782 ccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    |||||| || ||||||||| || ||||||||| |||||||    
T  1596769 ccaatagtgctggtcgtgagagtgtgtgttaagagtccca 1596808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 681 - 779
Target Start/End: Original strand, 20305365 - 20305467
Alignment:
Q  681 gatttttaagatggtatcaaagtctctttaagatctattgga----tcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaac 776  Q
    ||||||||||||||||||| || ||||| |||||| ||||||    ||||||||||| |||||| ||||| || | |||||| | | |||||||||||||    
T  20305365 gatttttaagatggtatcagagcctcttcaagatccattggatgggtcatctgctatcaggtttccgctatcgggccacccaccatttatgtccacgaac 20305464  T
Q  777 caa 779  Q
    |||    
T  20305465 caa 20305467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 831 - 895
Target Start/End: Original strand, 1596723 - 1596787
Alignment:
Q  831 ggtttccgttatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||| ||||| | || ||||  |||||||||| ||||||||||||||||||||||||||||    
T  1596723 ggtttccgctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtga 1596787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 831 - 895
Target Start/End: Complemental strand, 40746221 - 40746157
Alignment:
Q  831 ggtttccgttatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    ||||| |||||||||  || ||||  |||||||||| ||||||||||||||||||||||||||||    
T  40746221 ggttttcgttatcgaaccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtga 40746157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 682 - 813
Target Start/End: Original strand, 21861370 - 21861501
Alignment:
Q  682 atttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaac 781  Q
    |||| ||||||||||||| || ||||  |||||| |||||  || ||| ||| |||||| ||||| || | |||||| | | |||||||||||||||| |    
T  21861370 atttctaagatggtatcagagcctctccaagatccattgggccacctgttatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaagc 21861469  T
Q  782 ccaataatgttggtcgtgatagggtgtgttaa 813  Q
    | |||| || |||||||||  |||||||||||    
T  21861470 ctaatagtgctggtcgtgagggggtgtgttaa 21861501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 687 - 818
Target Start/End: Original strand, 31892233 - 31892364
Alignment:
Q  687 taagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaacccaat 786  Q
    |||||||| |||| || ||||  |||| |||||||  || ||||||| |||||| || || |  | |||||| | | |||||||||||||||| ||||||    
T  31892233 taagatggaatcagagcctctccaagacctattgggccacctgctatcaggtttccgttatcaggccacccaccatttatgtccacgaaccaagcccaat 31892332  T
Q  787 aatgttggtcgtgatagggtgtgttaacagtc 818  Q
    |||| |||||||||  ||||||||||| ||||    
T  31892333 aatgatggtcgtgagggggtgtgttaagagtc 31892364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 681 - 828
Target Start/End: Complemental strand, 36277235 - 36277088
Alignment:
Q  681 gatttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaa 780  Q
    ||||| ||||||| ||||| || ||||  |||||| |||||  || || |||| |||||| ||||| ||   |||||| | | ||||||||||||||||     
T  36277235 gatttctaagatgttatcagagcctctccaagatccattgggccacctactatcaggtttccgctatcggaccacccaccatttatgtccacgaaccaag 36277136  T
Q  781 cccaataatgttggtcgtgatagggtgtgttaacagtcccatatcaga 828  Q
    ||||||| || |||||||||  ||||||||||| |||| || ||||||    
T  36277135 cccaatagtgctggtcgtgagggggtgtgttaagagtctcacatcaga 36277088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 857 - 895
Target Start/End: Complemental strand, 3519967 - 3519929
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  3519967 tttatgtccacgaaccaagcccaatagtgctggtcgtga 3519929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 857 - 895
Target Start/End: Complemental strand, 36277154 - 36277116
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  36277154 tttatgtccacgaaccaagcccaatagtgctggtcgtga 36277116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 831 - 893
Target Start/End: Original strand, 38843204 - 38843266
Alignment:
Q  831 ggtttccgttatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgt 893  Q
    ||||| |||||||| |||||||| |||||||||||||||| |||| ||||| ||| |||||||    
T  38843204 ggttttcgttatcgtgtcatccattgtttatgtccatgaatcaagtccaatggtgatggtcgt 38843266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 727 - 821
Target Start/End: Complemental strand, 40746230 - 40746137
Alignment:
Q  727 ctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaacccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    ||||||| ||||||||| || |||  |||||| | | |||||||||||||||| ||||||| || |||||||||  ||||||||||| |||||||    
T  40746230 ctgctatcaggttttcgttatcgaaccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtga-ggggtgtgttaagagtccca 40746137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 681 - 821
Target Start/End: Complemental strand, 2404417 - 2404278
Alignment:
Q  681 gatttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaa 780  Q
    ||||| ||||||||||||| || |||||  | ||| ||||| ||| ||||||| |||||| |||||  |   |||| | ||| ||||||||||||||||     
T  2404417 gatttctaagatggtatcagagcctcttcgaaatccattgggtcacctgctatcaggtttccgctattggaccacctaccgtttatgtccacgaaccaag 2404318  T
Q  781 cccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    | ||||| || ||||||||| | |||||||||| |||||||    
T  2404317 cgcaatagtgctggtcgtgaga-ggtgtgttaagagtccca 2404278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 831 - 895
Target Start/End: Complemental strand, 3519914 - 3519850
Alignment:
Q  831 ggtttccgttatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||| ||||| | || ||||  |||||||||| ||||||||||||||| ||||||||||||    
T  3519914 ggtttccgctatcgggccacccaccatttatgtccacgaaccaagcccaataatgctggtcgtga 3519850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 831 - 895
Target Start/End: Original strand, 21861424 - 21861488
Alignment:
Q  831 ggtttccgttatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||| ||||| | || ||||  |||||||||| |||||||||| |||||||||||||||||    
T  21861424 ggtttccgctatcgggccacccaccatttatgtccacgaaccaagcctaatagtgctggtcgtga 21861488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 857 - 909
Target Start/End: Original strand, 25620292 - 25620344
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtgaatgagtgtgctaag 909  Q
    |||||||||| |||||||||||||||||| |||||||||| | ||||| ||||    
T  25620292 tttatgtccacgaaccaagcccaatagtgttggtcgtgaaggtgtgtgttaag 25620344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 681 - 821
Target Start/End: Original strand, 29469680 - 29469820
Alignment:
Q  681 gatttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaa 780  Q
    ||||| ||| ||||||||| || ||||  |||||| |||||  || ||| ||| ||| || ||||| || | |||||| | | |||||||||||| |||     
T  29469680 gatttctaatatggtatcagagcctctccaagatccattgggccacctgttatcaggcttccgctatcgggccacccaccatttatgtccacgaatcaag 29469779  T
Q  781 cccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    ||||||| || |||||||||  ||||||||||| |||||||    
T  29469780 cccaatagtgctggtcgtgagggggtgtgttaagagtccca 29469820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 681 - 796
Target Start/End: Complemental strand, 38127489 - 38127373
Alignment:
Q  681 gatttttaagatggtatcaaagtctct-ttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaa 779  Q
    |||||||||||| ||||||||  |||| |||||||| ||||  ||||||||||| |  ||||||||| ||| ||| ||||| | ||||||||| ||| ||    
T  38127489 gatttttaagattgtatcaaatcctctgttaagatcaattgagtcatctgctatcatattttcgctatcgaatcatccatcatttatgtccacaaactaa 38127390  T
Q  780 acccaataatgttggtc 796  Q
    || ||||  ||||||||    
T  38127389 acacaattgtgttggtc 38127373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 856 - 895
Target Start/End: Complemental strand, 2404337 - 2404298
Alignment:
Q  856 gtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    ||||||||||| ||||||||| ||||||||||||||||||    
T  2404337 gtttatgtccacgaaccaagcgcaatagtgctggtcgtga 2404298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 840 - 895
Target Start/End: Original strand, 4886468 - 4886523
Alignment:
Q  840 tatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    ||||||| || ||||  |||||||||| ||||||||||||||||| ||||||||||    
T  4886468 tatcgagccacccaccatttatgtccacgaaccaagcccaatagtactggtcgtga 4886523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 730 - 821
Target Start/End: Complemental strand, 31485619 - 31485528
Alignment:
Q  730 ctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaacccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    |||| |||||||| ||| || | |||||| | | ||| |||||||| ||||||||||| ||||| ||||||  ||||||||||| |||||||    
T  31485619 ctatcaggttttcactatcgggccacccaccatttatatccacgaatcaaacccaatagtgttgttcgtgagggggtgtgttaagagtccca 31485528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 857 - 896
Target Start/End: Original strand, 33834347 - 33834386
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtgaa 896  Q
    |||||||||| |||||||||||||||||| ||||||||||    
T  33834347 tttatgtccacgaaccaagcccaatagtgttggtcgtgaa 33834386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 857 - 895
Target Start/End: Complemental strand, 2315189 - 2315151
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||||| |||||||||||||||||| |||||||||    
T  2315189 tttatgtccacgaaccaagcccaatagtgttggtcgtga 2315151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 857 - 895
Target Start/End: Original strand, 29469761 - 29469799
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  29469761 tttatgtccacgaatcaagcccaatagtgctggtcgtga 29469799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 764 - 813
Target Start/End: Complemental strand, 2315187 - 2315138
Alignment:
Q  764 tatgtccacgaaccaaacccaataatgttggtcgtgatagggtgtgttaa 813  Q
    |||||||||||||||| ||||||| ||||||||||||  |||||| ||||    
T  2315187 tatgtccacgaaccaagcccaatagtgttggtcgtgagggggtgtattaa 2315138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 727 - 800
Target Start/End: Complemental strand, 3520002 - 3519929
Alignment:
Q  727 ctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaacccaataatgttggtcgtga 800  Q
    |||||||  ||||||||||| || | |||||| | | |||||||||||||||| ||||||| || |||||||||    
T  3520002 ctgctatctggttttcgctatcgggacacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtga 3519929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 768 - 829
Target Start/End: Complemental strand, 48243216 - 48243155
Alignment:
Q  768 tccacgaaccaaacccaataatgttggtcgtgatagggtgtgttaacagtcccatatcagat 829  Q
    |||||||||||| | ||||| || |||||||||  ||||||||||| ||||||| |||||||    
T  48243216 tccacgaaccaagctcaatagtgctggtcgtgagggggtgtgttaagagtcccacatcagat 48243155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 681 - 813
Target Start/End: Complemental strand, 48661564 - 48661431
Alignment:
Q  681 gatttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaa 780  Q
    ||||| ||| ||| ||||| || |||||||||| | ||||   || ||||||| |||||| ||||  || | |||||| | | ||||||||||||||||     
T  48661564 gatttctaatatgatatcagagcctctttaagaaccattgagccacctgctatcaggtttccgctttcgggccacccaccatttatgtccacgaaccaag 48661465  T
Q  781 cccaataatgttgg-tcgtgatagggtgtgttaa 813  Q
    ||||||| |||||| ||||||  |||||||||||    
T  48661464 cccaatagtgttggttcgtgagggggtgtgttaa 48661431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 4e-22; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 691 - 829
Target Start/End: Original strand, 17412417 - 17412555
Alignment:
Q  691 atggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaacccaataatg 790  Q
    ||||||| | || ||||| |||||| ||| |||||  |||||| || |||||| || |||| |||||||| | |||||||||||| ||| ||||||| ||    
T  17412417 atggtattagagcctcttcaagatccattagatcacttgctatcagattttcgttatcgagccacccatcatttatgtccacgaatcaagcccaatagtg 17412516  T
Q  791 ttggtcgtgatagggtgtgttaacagtcccatatcagat 829  Q
    ||||||||||| ||||||||||| ||||||| |||||||    
T  17412517 ttggtcgtgatggggtgtgttaaaagtcccacatcagat 17412555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 682 - 821
Target Start/End: Complemental strand, 4112783 - 4112644
Alignment:
Q  682 atttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaac 781  Q
    |||| ||||||||||||| || ||||  |||||| |||||| || ||||||| |||||| ||||| |||  |||||| | | |||||| ||||||||| |    
T  4112783 atttctaagatggtatcagagcctctccaagatccattggaccacctgctatcaggtttccgctatcgaaccacccaccatttatgtcaacgaaccaagc 4112684  T
Q  782 ccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    |||||| ||||||||||||  ||| ||||||| |||||||    
T  4112683 ccaatagtgttggtcgtgagggggggtgttaagagtccca 4112644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 681 - 821
Target Start/End: Original strand, 27413422 - 27413562
Alignment:
Q  681 gatttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaa 780  Q
    ||||| ||||||| ||||| || ||||  |||||||||| || || ||| ||| || ||| ||||| || | |||||| | | |||||||||||| |||     
T  27413422 gatttctaagatgatatcagagcctctccaagatctattagaccacctgttatcagatttccgctatcgggccacccaccatttatgtccacgaatcaag 27413521  T
Q  781 cccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    ||||||| |||||||||||| |||||||||||| |||||||    
T  27413522 cccaatagtgttggtcgtgagagggtgtgttaaaagtccca 27413562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 682 - 818
Target Start/End: Original strand, 7307797 - 7307933
Alignment:
Q  682 atttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaac 781  Q
    |||| ||||||| ||||| |||| ||| |||||| ||||| || |||||||| |||||| |||||  |   |||||| | | |||||||||||||||||     
T  7307797 atttctaagatgatatcatagtcacttcaagatccattgggtcgtctgctatcaggtttccgctattggaccacccaccatttatgtccacgaaccaaat 7307896  T
Q  782 ccaataatgttggtcgtgatagggtgtgttaacagtc 818  Q
    |||||| ||||||||||||  |||||| |||| ||||    
T  7307897 ccaatagtgttggtcgtgagggggtgtattaagagtc 7307933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 681 - 821
Target Start/End: Original strand, 35772104 - 35772244
Alignment:
Q  681 gatttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaa 780  Q
    ||||| ||||||||||||| || ||  | |||||| |||||  |||||||||| |||||| ||||| || | |||||| | | ||||||||||||||||     
T  35772104 gatttctaagatggtatcagagccttctcaagatccattgggccatctgctatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaag 35772203  T
Q  781 cccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    ||||||| ||  ||| ||||  ||||||||||| |||||||    
T  35772204 cccaatagtgccggttgtgagcgggtgtgttaagagtccca 35772244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 681 - 800
Target Start/End: Complemental strand, 4098412 - 4098293
Alignment:
Q  681 gatttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaa 780  Q
    ||||| |||| |||||||| || ||||| |||||| |||||  || |||| || ||||||  |||| || | |||||| | | ||||||||||||||||     
T  4098412 gatttctaagttggtatcagagactcttcaagatccattgggccacctgcaatcaggtttctgctatcgggccacccaccctttatgtccacgaaccaag 4098313  T
Q  781 cccaataatgttggtcgtga 800  Q
    ||||||||||||||||||||    
T  4098312 cccaataatgttggtcgtga 4098293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 682 - 821
Target Start/End: Original strand, 38668201 - 38668340
Alignment:
Q  682 atttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaac 781  Q
    |||| ||||||||||||| || ||||  | |||| ||||| ||| ||| ||| ||||||  |||| || |||||| ||| | |||||||| ||||||| |    
T  38668201 atttctaagatggtatcagagcctctccatgatccattgggtcacctgttatcaggtttctgctatcgggtcacctatcatttatgtccatgaaccaagc 38668300  T
Q  782 ccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    |||||| || |||||||||  ||||||||||| |||||||    
T  38668301 ccaatattgctggtcgtgagtgggtgtgttaagagtccca 38668340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 709 - 813
Target Start/End: Original strand, 369734 - 369839
Alignment:
Q  709 taagatctattggatcatctgctattaggttttcgctagcgag-tcacccatcgtctatgtccacgaaccaaacccaataatgttggtcgtgatagggtg 807  Q
    ||||||| ||||||||| ||||||| |||||| ||||| || | ||||||| | | |||||||||||||||| ||||||| || |||||||||  || ||    
T  369734 taagatccattggatcagctgctatcaggtttccgctatcggggtcacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgaggggatg 369833  T
Q  808 tgttaa 813  Q
    ||||||    
T  369834 tgttaa 369839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 857 - 909
Target Start/End: Original strand, 38668281 - 38668333
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtgaatgagtgtgctaag 909  Q
    |||||||||||||||||||||||||| |||||||||||| || ||||| ||||    
T  38668281 tttatgtccatgaaccaagcccaatattgctggtcgtgagtgggtgtgttaag 38668333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 682 - 821
Target Start/End: Complemental strand, 2859635 - 2859496
Alignment:
Q  682 atttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaac 781  Q
    |||| ||||||||||| | || ||||| |||||| |||||  || || |||||||||||  |||| || | |||||| | | |||||||||||||||| |    
T  2859635 atttctaagatggtattagagcctcttcaagatccattgggccaccttctattaggtttctgctatcgggccacccaccatttatgtccacgaaccaagc 2859536  T
Q  782 ccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    |||||| || |||||||||  ||| ||| ||| |||||||    
T  2859535 ccaatagtgctggtcgtgagggggggtgataagagtccca 2859496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 710 - 821
Target Start/End: Original strand, 25713262 - 25713373
Alignment:
Q  710 aagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaacccaataatgttggtcgtgatagggtgtg 809  Q
    |||||| |||||  || ||||||| | |||| ||||| || | |||||| | | |||||||||||||||| ||||||| ||||||||||||  ||| |||    
T  25713262 aagatccattgggccacctgctatcaagtttccgctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgttggtcgtgagggggggtg 25713361  T
Q  810 ttaacagtccca 821  Q
    |||| |||||||    
T  25713362 ttaagagtccca 25713373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 857 - 895
Target Start/End: Original strand, 369788 - 369826
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  369788 tttatgtccacgaaccaagcccaatagtgctggtcgtga 369826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 857 - 895
Target Start/End: Complemental strand, 2859555 - 2859517
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  2859555 tttatgtccacgaaccaagcccaatagtgctggtcgtga 2859517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 831 - 885
Target Start/End: Complemental strand, 8223501 - 8223447
Alignment:
Q  831 ggtttccgttatcgagtcatccactgtttatgtccatgaaccaagcccaatagtg 885  Q
    ||||| ||||||||||||| ||||| ||||| |||||| ||||||||||||||||    
T  8223501 ggttttcgttatcgagtcacccactatttatatccatgcaccaagcccaatagtg 8223447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 857 - 895
Target Start/End: Complemental strand, 39348280 - 39348242
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  39348280 tttatgtccacgaaccaagcccaatagtgctggtcgtga 39348242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 764 - 821
Target Start/End: Complemental strand, 8870850 - 8870793
Alignment:
Q  764 tatgtccacgaaccaaacccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    |||||||||||||||||||||||  || |||||||||  ||||||||||| |||||||    
T  8870850 tatgtccacgaaccaaacccaattgtgctggtcgtgagggggtgtgttaagagtccca 8870793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 832 - 895
Target Start/End: Original strand, 25713289 - 25713352
Alignment:
Q  832 gtttccgttatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    ||||||| ||||| | || ||||  |||||||||| |||||||||||||||||| |||||||||    
T  25713289 gtttccgctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgttggtcgtga 25713352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 681 - 821
Target Start/End: Original strand, 38733226 - 38733362
Alignment:
Q  681 gatttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaa 780  Q
    ||||| ||||||||||||| |||||||  |||||| |||||| || ||||||| |||||| ||||| |    |||||| | | ||| || |||||| ||     
T  38733226 gatttctaagatggtatcagagtctctccaagatccattggaccacctgctatcaggtttccgctatc----cacccaccatttatatctacgaactaag 38733321  T
Q  781 cccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    ||||||| || |||||||||   |||||||||| |||||||    
T  38733322 cccaatagtgctggtcgtgaagaggtgtgttaagagtccca 38733362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 857 - 895
Target Start/End: Complemental strand, 4112934 - 4112896
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||||| ||||||||| ||||||||||||||||||    
T  4112934 tttatgtccacgaaccaagctcaatagtgctggtcgtga 4112896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 857 - 895
Target Start/End: Complemental strand, 12325460 - 12325422
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||||| |||||||||||||||||| |||||||||    
T  12325460 tttatgtccacgaaccaagcccaatagtgttggtcgtga 12325422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 857 - 895
Target Start/End: Complemental strand, 12376601 - 12376563
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||||| |||||||||||||||||| |||||||||    
T  12376601 tttatgtccacgaaccaagcccaatagtgttggtcgtga 12376563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 764 - 821
Target Start/End: Complemental strand, 4112932 - 4112875
Alignment:
Q  764 tatgtccacgaaccaaacccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    |||||||||||||||| | ||||| || |||||||||  ||||||||||| |||||||    
T  4112932 tatgtccacgaaccaagctcaatagtgctggtcgtgagggggtgtgttaagagtccca 4112875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 764 - 813
Target Start/End: Complemental strand, 12325458 - 12325409
Alignment:
Q  764 tatgtccacgaaccaaacccaataatgttggtcgtgatagggtgtgttaa 813  Q
    |||||||||||||||| ||||||| ||||||||||||  | |||||||||    
T  12325458 tatgtccacgaaccaagcccaatagtgttggtcgtgagggtgtgtgttaa 12325409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 764 - 813
Target Start/End: Complemental strand, 12376599 - 12376550
Alignment:
Q  764 tatgtccacgaaccaaacccaataatgttggtcgtgatagggtgtgttaa 813  Q
    |||||||||||||||| ||||||| ||||||||||||  | |||||||||    
T  12376599 tatgtccacgaaccaagcccaatagtgttggtcgtgagggtgtgtgttaa 12376550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 764 - 829
Target Start/End: Original strand, 35892214 - 35892279
Alignment:
Q  764 tatgtccacgaaccaaacccaataatgttggtcgtgatagggtgtgttaacagtcccatatcagat 829  Q
    ||||||||||||  || ||||||  || ||||||||| |||||||||||| ||||||| |||||||    
T  35892214 tatgtccacgaattaagcccaattgtgctggtcgtgagagggtgtgttaagagtcccacatcagat 35892279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 691 - 776
Target Start/End: Complemental strand, 40524874 - 40524789
Alignment:
Q  691 atggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaac 776  Q
    ||||||||| || ||||| |||||| ||||| ||||||||||| | |||||||||| |    |||||| ||| |||||||||||||    
T  40524874 atggtatcagagcctcttcaagatccattggttcatctgctatcaagttttcgctatcagaccacccaccgtttatgtccacgaac 40524789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 764 - 825
Target Start/End: Complemental strand, 51459866 - 51459805
Alignment:
Q  764 tatgtccacgaaccaaacccaataatgttggtcgtgatagggtgtgttaacagtcccatatc 825  Q
    |||||| ||||||||| ||||||  || |||||||||  ||||||||||| |||||||||||    
T  51459866 tatgtctacgaaccaagcccaattgtgctggtcgtgagggggtgtgttaagagtcccatatc 51459805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 2e-21; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 681 - 826
Target Start/End: Complemental strand, 6919438 - 6919293
Alignment:
Q  681 gatttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaa 780  Q
    |||||||||||||||||||||| ||||| |||||| ||||  ||||||||||| |||||| ||||  ||   ||| || | | ||||||||||||||||     
T  6919438 gatttttaagatggtatcaaagcctcttcaagatccattgagtcatctgctatcaggtttccgctttcggaccactcaccatttatgtccacgaaccaag 6919339  T
Q  781 cccaataatgttggtcgtgatagggtgtgttaacagtcccatatca 826  Q
    ||||||| || |||||||||| | ||||||||| ||||||| ||||    
T  6919338 cccaatagtgctggtcgtgatggtgtgtgttaagagtcccacatca 6919293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 681 - 818
Target Start/End: Complemental strand, 95510 - 95373
Alignment:
Q  681 gatttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaa 780  Q
    ||||| ||||||||||||| || ||||  |||||| |||||  || ||||||| |||||| ||| | || | |||||| | | ||||||||||||||||     
T  95510 gatttctaagatggtatcagagcctctccaagatccattgggccacctgctatcaggtttccgccatcgggccacccaccatttatgtccacgaaccaag 95411  T
Q  781 cccaataatgttggtcgtgatagggtgtgttaacagtc 818  Q
    ||||||| || |||||||||  ||||||||||| ||||    
T  95410 cccaatagtgctggtcgtgagggggtgtgttaagagtc 95373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 682 - 819
Target Start/End: Complemental strand, 32908960 - 32908824
Alignment:
Q  682 atttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaac 781  Q
    |||| ||||||| ||| | || ||||| |||||| |||||  |||||||||| ||||||  |||| || |||||||| | | |||||| |||||||||||    
T  32908960 atttctaagatgatattagagcctcttcaagatccattgggccatctgctatcaggtttctgctatcgggtcacccaccatttatgtcaacgaaccaaac 32908861  T
Q  782 ccaataatgttggtcgtgatagggtgtgttaacagtcc 819  Q
    |||||| || |||||||||  ||||||||||| |||||    
T  32908860 ccaatagtgctggtcgtga-ggggtgtgttaagagtcc 32908824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 831 - 895
Target Start/End: Complemental strand, 41666946 - 41666882
Alignment:
Q  831 ggtttccgttatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||||||||| | || ||||  |||||||||| ||||||||||||||||||||||||||||    
T  41666946 ggtttccgttatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtga 41666882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 682 - 821
Target Start/End: Original strand, 9368671 - 9368810
Alignment:
Q  682 atttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaac 781  Q
    |||| |||| |||||||| || ||||| |||||| |||||  || ||||||| |||||| |||||  |   |||||| | | ||||||||||||||||||    
T  9368671 atttctaaggtggtatcagagcctcttcaagatccattgggccacctgctatcaggtttccgctattggaccacccaccatgtatgtccacgaaccaaac 9368770  T
Q  782 ccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    |||||| || |||||||||  |||||| |||| |||||||    
T  9368771 ccaatagtgctggtcgtgagggggtgtcttaagagtccca 9368810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 687 - 813
Target Start/End: Complemental strand, 18333702 - 18333577
Alignment:
Q  687 taagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaacccaat 786  Q
    ||||||||||||| || ||||| |||||| || ||  || ||||||| |||||||||||| || | |||||| | | |||||||||||||||| |||| |    
T  18333702 taagatggtatcagagcctcttcaagatccatcgggccacctgctatcaggttttcgctatcgggccacccaccatttatgtccacgaaccaagcccatt 18333603  T
Q  787 aatgttggtcgtgatagggtgtgttaa 813  Q
    | || |||||||||  |||||||||||    
T  18333602 agtgctggtcgtga-ggggtgtgttaa 18333577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 857 - 895
Target Start/End: Complemental strand, 38731765 - 38731727
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||||||||||||||||||||||||||||||||||    
T  38731765 tttatgtccatgaaccaagcccaatagtgctggtcgtga 38731727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 704 - 821
Target Start/End: Complemental strand, 13700811 - 13700694
Alignment:
Q  704 ctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaacccaataatgttggtcgtgatag 803  Q
    ||||| |||||| ||||| ||| ||||||| |||||| ||||| |  | |||||| | | ||||  |||||||||||||||||| |||||||||| | |     
T  13700811 ctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacccaccatttatgatcacgaaccaaacccaatagtgttggtcgtaagaa 13700712  T
Q  804 ggtgtgttaacagtccca 821  Q
    |||||||||| |||||||    
T  13700711 ggtgtgttaagagtccca 13700694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 681 - 821
Target Start/End: Complemental strand, 24270115 - 24269974
Alignment:
Q  681 gatttttaagatggtatcaaagtctcttt-aagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaa 779  Q
    ||||||||||||||||||| || ||| |  |||||| |||||  || ||||||| |||||| || || || | |||||| | | ||||||||||||||||    
T  24270115 gatttttaagatggtatcagagcctcctccaagatccattgggccacctgctatcaggtttccgttatcgggccacccaccatttatgtccacgaaccaa 24270016  T
Q  780 acccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
     | ||||| || |||||||||  ||||||||||| |||||||    
T  24270015 gctcaatagtgctggtcgtgagggggtgtgttaagagtccca 24269974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 681 - 821
Target Start/End: Complemental strand, 24346746 - 24346605
Alignment:
Q  681 gatttttaagatggtatcaaagtctcttt-aagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaa 779  Q
    ||||||||||||||||||| || ||| |  |||||| |||||  || ||||||| |||||| || || || | |||||| | | ||||||||||||||||    
T  24346746 gatttttaagatggtatcagagcctcctccaagatccattgggccacctgctatcaggtttccgttatcgggccacccaccatttatgtccacgaaccaa 24346647  T
Q  780 acccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
     | ||||| || |||||||||  ||||||||||| |||||||    
T  24346646 gctcaatagtgctggtcgtgagggggtgtgttaagagtccca 24346605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 681 - 829
Target Start/End: Original strand, 15480397 - 15480545
Alignment:
Q  681 gatttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaa 780  Q
    ||||| ||||||||||||| || ||||| |||||| |||||  || ||||||| |||||| |||||  | | |||||| | | |||||||| |||||||     
T  15480397 gatttctaagatggtatcagagcctcttcaagatccattgggccacctgctatcaggtttccgctattgggccacccaccatttatgtccatgaaccaag 15480496  T
Q  781 cccaataatgttggtcgtgatagggtgtgttaacagtcccatatcagat 829  Q
    || |||  || |||||||||   |||||||||| ||||||| |||||||    
T  15480497 cctaatcgtgctggtcgtgaggaggtgtgttaagagtcccacatcagat 15480545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 831 - 895
Target Start/End: Complemental strand, 24270059 - 24269995
Alignment:
Q  831 ggtttccgttatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||||||||| | || ||||  |||||||||| ||||||||| ||||||||||||||||||    
T  24270059 ggtttccgttatcgggccacccaccatttatgtccacgaaccaagctcaatagtgctggtcgtga 24269995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 831 - 895
Target Start/End: Complemental strand, 24346690 - 24346626
Alignment:
Q  831 ggtttccgttatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||||||||| | || ||||  |||||||||| ||||||||| ||||||||||||||||||    
T  24346690 ggtttccgttatcgggccacccaccatttatgtccacgaaccaagctcaatagtgctggtcgtga 24346626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 681 - 821
Target Start/End: Original strand, 43117722 - 43117861
Alignment:
Q  681 gatttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaa 780  Q
    ||||| |||||| |||||| || || |  ||||||||||||  || ||||||| |||||| ||||| ||   |||||||| | ||||||||||||||||     
T  43117722 gatttctaagatagtatcagagcctttccaagatctattgggccacctgctatcaggtttccgctatcggaccacccatcatttatgtccacgaaccaag 43117821  T
Q  781 cccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    | ||||| ||||||||||||  ||| ||||||| |||||||    
T  43117822 ctcaatagtgttggtcgtga-ggggggtgttaagagtccca 43117861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 840 - 895
Target Start/End: Original strand, 6415811 - 6415866
Alignment:
Q  840 tatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    ||||| ||||||||| ||||||||||| |||||||||||||||||| |||| ||||    
T  6415811 tatcgggtcatccaccgtttatgtccacgaaccaagcccaatagtgttggttgtga 6415866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 857 - 895
Target Start/End: Complemental strand, 95429 - 95391
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  95429 tttatgtccacgaaccaagcccaatagtgctggtcgtga 95391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 857 - 895
Target Start/End: Complemental strand, 6919357 - 6919319
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  6919357 tttatgtccacgaaccaagcccaatagtgctggtcgtga 6919319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 857 - 895
Target Start/End: Complemental strand, 8081277 - 8081239
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  8081277 tttatgtccacgaaccaagcccaatagtgctggtcgtga 8081239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 764 - 818
Target Start/End: Original strand, 15590096 - 15590150
Alignment:
Q  764 tatgtccacgaaccaaacccaataatgttggtcgtgatagggtgtgttaacagtc 818  Q
    |||||||||||||||||||||||| || |||||||||  ||||||||||| ||||    
T  15590096 tatgtccacgaaccaaacccaatagtgctggtcgtgagggggtgtgttaagagtc 15590150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 857 - 895
Target Start/End: Original strand, 18885383 - 18885421
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  18885383 tttatgtctatgaaccaagcccaatagtgctggtcgtga 18885421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 857 - 895
Target Start/End: Original strand, 24531755 - 24531793
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  24531755 tttatgtccacgaaccaagcccaatagtgctggtcgtga 24531793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 727 - 821
Target Start/End: Complemental strand, 41666955 - 41666861
Alignment:
Q  727 ctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaacccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    ||||||| |||||| || || || | |||||| | | |||||||||||||||| ||||||| || |||||||||  ||||||||||| |||||||    
T  41666955 ctgctatcaggtttccgttatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtgttaagagtccca 41666861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 764 - 821
Target Start/End: Complemental strand, 8081275 - 8081218
Alignment:
Q  764 tatgtccacgaaccaaacccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    |||||||||||||||| ||||||| || |||||||||  ||||||||||| |||||||    
T  8081275 tatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtgttaagagtccca 8081218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 728 - 821
Target Start/End: Complemental strand, 17352631 - 17352538
Alignment:
Q  728 tgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaacccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    |||||| |||||| |||||  | |||||| | ||| |||||||||||||||| |||||||||| ||||||| |   |||||||||| |||||||    
T  17352631 tgctatcaggtttccgctattgggtcacctaccgtttatgtccacgaaccaagcccaataatgctggtcgtaaggaggtgtgttaagagtccca 17352538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 712 - 821
Target Start/End: Complemental strand, 33337451 - 33337342
Alignment:
Q  712 gatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaacccaataatgttggtcgtgatagggtgtgtt 811  Q
    |||| |||||| ||| |||||| |||||| ||| | || | |||||| | | |||||||||||||||| ||||||| || ||||| |||  |||||||||    
T  33337451 gatccattggaccatttgctatcaggtttccgccatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcatgagggggtgtgtt 33337352  T
Q  812 aacagtccca 821  Q
    || |||||||    
T  33337351 aagagtccca 33337342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 681 - 813
Target Start/End: Complemental strand, 17150477 - 17150345
Alignment:
Q  681 gatttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaa 780  Q
    ||||||||||||||||||| || ||||| |||||| |||||  || || |||| |||||| ||||| || | |||||| | | ||||||||  ||||||     
T  17150477 gatttttaagatggtatcagagcctcttcaagatccattgggccacctactatcaggtttccgctatcgggccacccaccatttatgtccagaaaccaat 17150378  T
Q  781 cccaataatgttggtcgtgatagggtgtgttaa 813  Q
     |||||| ||||| | ||||  |||||||||||    
T  17150377 accaatagtgttgtttgtgagggggtgtgttaa 17150345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 681 - 813
Target Start/End: Original strand, 24531674 - 24531806
Alignment:
Q  681 gatttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaa 780  Q
    ||||| ||||||||||||| || |||| || |||| |||||  || ||||||| || |||  | || |||  |||||| | | ||||||||||||||||     
T  24531674 gatttctaagatggtatcagagcctctctatgatccattgggccacctgctatcagttttctgttatcgaaccacccaacatttatgtccacgaaccaag 24531773  T
Q  781 cccaataatgttggtcgtgatagggtgtgttaa 813  Q
    ||||||| || |||||||||  |||||||||||    
T  24531774 cccaatagtgctggtcgtgagggggtgtgttaa 24531806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 681 - 779
Target Start/End: Complemental strand, 6413666 - 6413568
Alignment:
Q  681 gatttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaa 779  Q
    ||||| ||| |||||||||||| ||||| |||||| |||||  || ||||||| |||| | | ||| |||| |||||| | | ||||||||||||||||    
T  6413666 gatttctaatatggtatcaaagcctcttcaagatccattgggccacctgctatcaggtatccactatcgagccacccaccatttatgtccacgaaccaa 6413568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 764 - 818
Target Start/End: Complemental strand, 11896076 - 11896022
Alignment:
Q  764 tatgtccacgaaccaaacccaataatgttggtcgtgatagggtgtgttaacagtc 818  Q
    ||||||| |||||||||||||||| || |||||||||  ||||||||||| ||||    
T  11896076 tatgtccgcgaaccaaacccaatagtgatggtcgtgagggggtgtgttaagagtc 11896022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 857 - 895
Target Start/End: Original strand, 15480478 - 15480516
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    ||||||||||||||||||||| ||| |||||||||||||    
T  15480478 tttatgtccatgaaccaagcctaatcgtgctggtcgtga 15480516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 857 - 895
Target Start/End: Original strand, 15590094 - 15590132
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  15590094 tttatgtccacgaaccaaacccaatagtgctggtcgtga 15590132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 831 - 893
Target Start/End: Complemental strand, 17352623 - 17352561
Alignment:
Q  831 ggtttccgttatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgt 893  Q
    |||||||| ||| | |||| | || ||||||||||| ||||||||||||||| ||||||||||    
T  17352623 ggtttccgctattgggtcacctaccgtttatgtccacgaaccaagcccaataatgctggtcgt 17352561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 857 - 895
Target Start/End: Complemental strand, 18333627 - 18333589
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||||| |||||||||||| |||||||||||||||    
T  18333627 tttatgtccacgaaccaagcccattagtgctggtcgtga 18333589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 735 - 821
Target Start/End: Original strand, 18885356 - 18885442
Alignment:
Q  735 aggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaacccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    |||||||||||| ||   |||||| | | |||||| | ||||||| ||||||| || ||||||||| |||||||||||| |||||||    
T  18885356 aggttttcgctatcggaccacccaccatttatgtctatgaaccaagcccaatagtgctggtcgtgagagggtgtgttaagagtccca 18885442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 727 - 821
Target Start/End: Complemental strand, 26137307 - 26137213
Alignment:
Q  727 ctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaacccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    ||||||| |||||||| | | || | |||||||| | ||||||||||||||||  ||||||||| | |||||||  |||||| |||| |||||||    
T  26137307 ctgctatcaggttttcaccatcgggccacccatcatttatgtccacgaaccaagtccaataatgctagtcgtgagggggtgtattaagagtccca 26137213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 857 - 891
Target Start/End: Complemental strand, 33337401 - 33337367
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtc 891  Q
    |||||||||| ||||||||||||||||||||||||    
T  33337401 tttatgtccacgaaccaagcccaatagtgctggtc 33337367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 6e-21; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 681 - 821
Target Start/End: Original strand, 4155399 - 4155539
Alignment:
Q  681 gatttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaa 780  Q
    ||||| ||||||||||||| |||||||  |||||  |||||  || ||||||| |||||| ||||| || | |||||| ||| |||||| |||||||||     
T  4155399 gatttctaagatggtatcagagtctctccaagattcattgggccacctgctatcaggtttccgctatcgggccacccaccgtttatgtcgacgaaccaag 4155498  T
Q  781 cccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    ||||||| || ||||||||| |||||||||||| |||||||    
T  4155499 cccaatagtgctggtcgtgagagggtgtgttaagagtccca 4155539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 684 - 821
Target Start/End: Original strand, 34992684 - 34992821
Alignment:
Q  684 ttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaaccc 783  Q
    |||||||||||||||| |||||||  ||| || |||||  || ||||||| |||||| ||||  || |||||||| | | |||||||||||||||| |||    
T  34992684 ttttaagatggtatcagagtctctccaaggtccattgggccacctgctatcaggtttccgctgtcgggtcacccaccatttatgtccacgaaccaagccc 34992783  T
Q  784 aataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    |||| || |||||||||  ||||||||||| |||||||    
T  34992784 aatagtgctggtcgtgagggggtgtgttaagagtccca 34992821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 680 - 779
Target Start/End: Complemental strand, 37246863 - 37246764
Alignment:
Q  680 tgatttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaa 779  Q
    |||||||||||||||||||||||||| || |||||  |||||| || ||||||||||||||||| || || |||| ||| | | |||||| |||||||||    
T  37246863 tgatttttaagatggtatcaaagtctattcaagattcattggaccacctgctattaggttttcgttatcgggtcatccaccatttatgtcaacgaaccaa 37246764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 831 - 904
Target Start/End: Complemental strand, 13574874 - 13574801
Alignment:
Q  831 ggtttccgttatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtgaatgagtgtg 904  Q
    |||||||| ||||| |||| ||||  |||||||||| |||||||||||||||||||| |||||||  |||||||    
T  13574874 ggtttccgctatcgtgtcacccaccatttatgtccacgaaccaagcccaatagtgctagtcgtgagggagtgtg 13574801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 680 - 813
Target Start/End: Complemental strand, 20327859 - 20327726
Alignment:
Q  680 tgatttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaa 779  Q
    |||||| ||| |||||||||  | |||| ||| ||| |||||  || ||||||| |||||| ||||| || | |||||| | | |||||||| |||||||    
T  20327859 tgatttctaatatggtatcagtgcctctctaaaatccattgggccacctgctatcaggtttccgctatcgggccacccaccatttatgtccaggaaccaa 20327760  T
Q  780 acccaataatgttggtcgtgatagggtgtgttaa 813  Q
     ||||||| ||||||||||||  |||||||||||    
T  20327759 gcccaatagtgttggtcgtgagcgggtgtgttaa 20327726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 831 - 895
Target Start/End: Original strand, 4155454 - 4155518
Alignment:
Q  831 ggtttccgttatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||| ||||| | || |||| ||||||||| | ||||||||||||||||||||||||||||    
T  4155454 ggtttccgctatcgggccacccaccgtttatgtcgacgaaccaagcccaatagtgctggtcgtga 4155518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 682 - 813
Target Start/End: Complemental strand, 13574929 - 13574797
Alignment:
Q  682 atttttaagatggtatcaaagtctct-ttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaa 780  Q
    |||| ||| |||||||||||| |||  |||||||| |||||  || ||||||| |||||| ||||| || |||||||| | | ||||||||||||||||     
T  13574929 atttctaatatggtatcaaagcctcagttaagatccattgggccacctgctatcaggtttccgctatcgtgtcacccaccatttatgtccacgaaccaag 13574830  T
Q  781 cccaataatgttggtcgtgatagggtgtgttaa 813  Q
    ||||||| || | |||||||  | |||||||||    
T  13574829 cccaatagtgctagtcgtgagggagtgtgttaa 13574797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 831 - 895
Target Start/End: Original strand, 16239722 - 16239786
Alignment:
Q  831 ggtttccgttatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||||||||||| || ||||  |||||||||| ||||||||| |||||||| |||||||||    
T  16239722 ggtttccgttatcgagccacccaccatttatgtccacgaaccaagctcaatagtgatggtcgtga 16239786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 831 - 895
Target Start/End: Original strand, 34992736 - 34992800
Alignment:
Q  831 ggtttccgttatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||| | ||| |||| ||||  |||||||||| ||||||||||||||||||||||||||||    
T  34992736 ggtttccgctgtcgggtcacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtga 34992800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 764 - 819
Target Start/End: Complemental strand, 29215749 - 29215695
Alignment:
Q  764 tatgtccacgaaccaaacccaataatgttggtcgtgatagggtgtgttaacagtcc 819  Q
    |||||||||||||||||||||||| ||||||||||||  ||||||||||| |||||    
T  29215749 tatgtccacgaaccaaacccaatagtgttggtcgtga-ggggtgtgttaagagtcc 29215695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 691 - 821
Target Start/End: Complemental strand, 19954451 - 19954322
Alignment:
Q  691 atggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaacccaataatg 790  Q
    ||||||||| || ||||| |||||| |||||  |||||||||| |||||||||||| |    |||||| | | |||||||||||||||| ||||||| |     
T  19954451 atggtatcagagcctcttcaagatccattgggccatctgctatcaggttttcgctatctgaccacccaccatttatgtccacgaaccaagcccaatagta 19954352  T
Q  791 ttggtcgtgatagggtgtgttaacagtccca 821  Q
     |||||||||  ||| ||||||| |||||||    
T  19954351 ctggtcgtga-ggggggtgttaagagtccca 19954322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 831 - 895
Target Start/End: Complemental strand, 20327803 - 20327739
Alignment:
Q  831 ggtttccgttatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||| ||||| | || ||||  |||||||||| |||||||||||||||||| |||||||||    
T  20327803 ggtttccgctatcgggccacccaccatttatgtccaggaaccaagcccaatagtgttggtcgtga 20327739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 727 - 818
Target Start/End: Original strand, 16239713 - 16239804
Alignment:
Q  727 ctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaacccaataatgttggtcgtgatagggtgtgttaacagtc 818  Q
    ||||||| |||||| || || |||| |||||| | | |||||||||||||||| | ||||| || |||||||||  ||||||||||| ||||    
T  16239713 ctgctatcaggtttccgttatcgagccacccaccatttatgtccacgaaccaagctcaatagtgatggtcgtgagggggtgtgttaagagtc 16239804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 764 - 819
Target Start/End: Original strand, 31317389 - 31317444
Alignment:
Q  764 tatgtccacgaaccaaacccaataatgttggtcgtgatagggtgtgttaacagtcc 819  Q
    |||||||||||||||||| ||||| || |||||||||  ||||||||||| |||||    
T  31317389 tatgtccacgaaccaaactcaatagtgctggtcgtgagggggtgtgttaagagtcc 31317444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 857 - 896
Target Start/End: Original strand, 49629762 - 49629801
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtgaa 896  Q
    ||||||||||| ||||||||||||||||| ||||||||||    
T  49629762 tttatgtccataaaccaagcccaatagtgttggtcgtgaa 49629801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 857 - 895
Target Start/End: Complemental strand, 19954380 - 19954342
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||||| ||||||||||||||||| ||||||||||    
T  19954380 tttatgtccacgaaccaagcccaatagtactggtcgtga 19954342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 857 - 895
Target Start/End: Complemental strand, 21808875 - 21808837
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||| ||| ||||||||||||||||||||||||||||    
T  21808875 tttatgcccacgaaccaagcccaatagtgctggtcgtga 21808837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 831 - 909
Target Start/End: Original strand, 22729623 - 22729701
Alignment:
Q  831 ggtttccgttatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtgaatgagtgtgctaag 909  Q
    |||||||| |||||  ||| ||||  |||||||||| ||||||||||||||| |||| |||||||| | ||||| ||||    
T  22729623 ggtttccgctatcggatcacccacaatttatgtccacgaaccaagcccaataatgctagtcgtgaacgggtgtgttaag 22729701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 687 - 821
Target Start/End: Complemental strand, 35038431 - 35038298
Alignment:
Q  687 taagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaacccaat 786  Q
    |||||||||||||  | ||||  |||||| |||||  || |||| || |||||| ||||| || | |||||| | | |||||||||||||||| ||||||    
T  35038431 taagatggtatcagtgcctctccaagatccattgggccacctgcaatcaggtttccgctatcg-gccacccaccatttatgtccacgaaccaagcccaat 35038333  T
Q  787 aatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    | |  |||||||||  ||||||||||| |||||||    
T  35038332 agtactggtcgtgagggggtgtgttaagagtccca 35038298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 857 - 895
Target Start/End: Complemental strand, 35038357 - 35038319
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||||| ||||||||||||||||| ||||||||||    
T  35038357 tttatgtccacgaaccaagcccaatagtactggtcgtga 35038319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 857 - 895
Target Start/End: Complemental strand, 39683431 - 39683393
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  39683431 tttatgtccacgaaccaagcccaataatgctggtcgtga 39683393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 764 - 813
Target Start/End: Original strand, 22729651 - 22729700
Alignment:
Q  764 tatgtccacgaaccaaacccaataatgttggtcgtgatagggtgtgttaa 813  Q
    |||||||||||||||| |||||||||| | |||||||  |||||||||||    
T  22729651 tatgtccacgaaccaagcccaataatgctagtcgtgaacgggtgtgttaa 22729700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 764 - 821
Target Start/End: Complemental strand, 39683429 - 39683372
Alignment:
Q  764 tatgtccacgaaccaaacccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    |||||||||||||||| |||||||||| |||||||||  |  |||||||| |||||||    
T  39683429 tatgtccacgaaccaagcccaataatgctggtcgtgagggactgtgttaagagtccca 39683372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 728 - 821
Target Start/End: Complemental strand, 52724183 - 52724090
Alignment:
Q  728 tgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaacccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    |||||| |||||||||||| || | |||||| | | |||||||| ||||||||| | ||| ||||| ||||||   |||||||||| |||||||    
T  52724183 tgctatcaggttttcgctatcgggccacccaccatttatgtccatgaaccaaactcgatagtgttgatcgtgaagaggtgtgttaagagtccca 52724090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 682 - 821
Target Start/End: Original strand, 1992 - 2131
Alignment:
Q  682 atttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaac 781  Q
    |||| ||||||||||||| || ||||  |||||| |||||  || ||| ||| |||||| ||||| ||||||||||| | | |||||||||||||||| |    
T  1992 atttctaagatggtatcagagcctctccaagatccattgggccacctgttatcaggtttccgctatcgagtcacccaccatttatgtccacgaaccaagc 2091  T
Q  782 ccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    |||||| || |||||||||  ||||||||||| |||||||    
T  2092 ccaatagtgctggtcgtgagggggtgtgttaagagtccca 2131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 831 - 895
Target Start/End: Original strand, 2046 - 2110
Alignment:
Q  831 ggtttccgttatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||| |||||||||| ||||  |||||||||| ||||||||||||||||||||||||||||    
T  2046 ggtttccgctatcgagtcacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtga 2110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 682 - 821
Target Start/End: Complemental strand, 11232437 - 11232298
Alignment:
Q  682 atttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaac 781  Q
    |||| ||||||||||||| || ||||  |||||| |||||  || ||| ||| |||||| ||||| ||||||||||| | | |||||||||||||||| |    
T  11232437 atttctaagatggtatcagagcctctccaagatccattgggccacctgttatcaggtttccgctatcgagtcacccaccatttatgtccacgaaccaagc 11232338  T
Q  782 ccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    |||||| || |||||||||  ||||||||||| |||||||    
T  11232337 ccaatagtgctggtcgtgagggggtgtgttaagagtccca 11232298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 681 - 821
Target Start/End: Original strand, 41790733 - 41790873
Alignment:
Q  681 gatttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaa 780  Q
    ||||| ||||||||||||| || ||||| |||||| |||||  || ||||||| |||||| ||||| |||| |||||| | | |||||||| |||||||     
T  41790733 gatttctaagatggtatcagagcctcttcaagatccattgggccacctgctatcaggtttccgctatcgagccacccaccatttatgtccatgaaccaag 41790832  T
Q  781 cccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    ||||| | || |||||||||  ||||||||||| |||||||    
T  41790833 cccaagagtgctggtcgtgagggggtgtgttaagagtccca 41790873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 682 - 818
Target Start/End: Complemental strand, 3157567 - 3157431
Alignment:
Q  682 atttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaac 781  Q
    |||| ||||||| ||||| || ||||  || ||| |||||| || ||||||| |||||||||||| || | |||||| | | |||||||||||||||| |    
T  3157567 atttataagatgatatcagagcctctccaaaatccattggaccacctgctatcaggttttcgctatcgggacacccaccatttatgtccacgaaccaagc 3157468  T
Q  782 ccaataatgttggtcgtgatagggtgtgttaacagtc 818  Q
    |||||| || |||||||||  ||||||||||| ||||    
T  3157467 ccaatagtgctggtcgtgagtgggtgtgttaagagtc 3157431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 681 - 821
Target Start/End: Original strand, 8084202 - 8084342
Alignment:
Q  681 gatttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaa 780  Q
    ||||| ||||||||||||| || ||||  |||||| |||||  ||  |||||| ||||||||||||  |  ||||||| | | ||||||||||||||||     
T  8084202 gatttctaagatggtatcagagcctctccaagatccattgggccacatgctatcaggttttcgctattggatcacccaccatttatgtccacgaaccaag 8084301  T
Q  781 cccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    ||||||| || |||||||||  ||||||||||| |||||||    
T  8084302 cccaatagtgctggtcgtgagggggtgtgttaagagtccca 8084342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 831 - 895
Target Start/End: Complemental strand, 11232383 - 11232319
Alignment:
Q  831 ggtttccgttatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||| |||||||||| ||||  |||||||||| ||||||||||||||||||||||||||||    
T  11232383 ggtttccgctatcgagtcacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtga 11232319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 727 - 829
Target Start/End: Complemental strand, 39052735 - 39052633
Alignment:
Q  727 ctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaacccaataatgttggtcgtgatagggtgtgttaacagtcccatatca 826  Q
    ||||||| |||||| ||||| |  | |||||| | | |||||||||||||||| ||||||| ||||||||||||  ||||||||||| ||||||| ||||    
T  39052735 ctgctatcaggtttccgctatccggccacccaccatttatgtccacgaaccaagcccaatagtgttggtcgtgagggggtgtgttaagagtcccacatca 39052636  T
Q  827 gat 829  Q
    |||    
T  39052635 gat 39052633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 681 - 821
Target Start/End: Complemental strand, 20094804 - 20094664
Alignment:
Q  681 gatttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaa 780  Q
    ||||| |||| |||||||| ||| |||| |||||| |||||  || || |||| |||||||||||| |  | |||||| | | ||||||||||||||||     
T  20094804 gatttataagttggtatcagagtttcttcaagatccattgggccacctcctatcaggttttcgctatcaggccacccaccatttatgtccacgaaccaag 20094705  T
Q  781 cccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    ||||||| || |||||||||  ||| ||||||| |||||||    
T  20094704 cccaatagtgctggtcgtgagggggcgtgttaagagtccca 20094664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 681 - 813
Target Start/End: Original strand, 20301336 - 20301468
Alignment:
Q  681 gatttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaa 780  Q
    ||||| ||||||||||||| || ||||| |||||| |||||  || ||||||| |||||| ||||| ||   |||||| | | |||||| |||||||||     
T  20301336 gatttctaagatggtatcagagcctcttcaagatccattgggccacctgctatcaggtttccgctatcggaccacccaccatttatgtctacgaaccaag 20301435  T
Q  781 cccaataatgttggtcgtgatagggtgtgttaa 813  Q
    ||||||| || |||||||||  |||||||||||    
T  20301436 cccaatagtgctggtcgtgagggggtgtgttaa 20301468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 681 - 813
Target Start/End: Original strand, 21087968 - 21088100
Alignment:
Q  681 gatttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaa 780  Q
    ||||| ||||||||||||| || ||||| |||||| |||||  || ||||||| |||||| ||||| ||   |||||| | | |||||| |||||||||     
T  21087968 gatttctaagatggtatcagagcctcttcaagatccattgggccacctgctatcaggtttccgctatcggaccacccaccatttatgtctacgaaccaag 21088067  T
Q  781 cccaataatgttggtcgtgatagggtgtgttaa 813  Q
    ||||||| || |||||||||  |||||||||||    
T  21088068 cccaatagtgctggtcgtgagggggtgtgttaa 21088100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 831 - 895
Target Start/End: Original strand, 41790788 - 41790852
Alignment:
Q  831 ggtttccgttatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||| ||||||| || ||||  |||||||||||||||||||||||| ||||||||||||||    
T  41790788 ggtttccgctatcgagccacccaccatttatgtccatgaaccaagcccaagagtgctggtcgtga 41790852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 682 - 829
Target Start/End: Complemental strand, 5932192 - 5932045
Alignment:
Q  682 atttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaac 781  Q
    |||||||||||||||||| || ||||  |||||| |||||| || || |||| | |||| || || || | |||||| | | |||||| || |||||| |    
T  5932192 atttttaagatggtatcagagcctctccaagatccattggaccacctactatcacgtttccgttatcgggccacccaccatttatgtcgacaaaccaagc 5932093  T
Q  782 ccaataatgttggtcgtgatagggtgtgttaacagtcccatatcagat 829  Q
     ||||| || ||||||||| |||||||||||| ||||||| |||||||    
T  5932092 gcaatagtgctggtcgtgaaagggtgtgttaagagtcccacatcagat 5932045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 687 - 828
Target Start/End: Complemental strand, 18004332 - 18004193
Alignment:
Q  687 taagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaacccaat 786  Q
    ||||||||||||| || ||||  |||||| |||||  || ||||||| |||||| ||||| || | |||||| | | |||||||||||||||| || |||    
T  18004332 taagatggtatcagagcctctccaagatccattgggccacctgctatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaagcctaat 18004233  T
Q  787 aatgttggtcgtgatagggtgtgttaacagtcccatatcaga 828  Q
    | || ||||||||  |||| ||||||| ||||||| ||||||    
T  18004232 agtgctggtcgtg--agggggtgttaagagtcccacatcaga 18004193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 727 - 821
Target Start/End: Complemental strand, 39052892 - 39052798
Alignment:
Q  727 ctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaacccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    ||||||| |||||| ||||| |  | |||||| | | |||||||||||||||| ||||||| ||||||||||||  ||||||||||| |||||||    
T  39052892 ctgctatcaggtttccgctatccggccacccaccatttatgtccacgaaccaagcccaatagtgttggtcgtgagggggtgtgttaagagtccca 39052798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 717 - 818
Target Start/End: Complemental strand, 3157217 - 3157116
Alignment:
Q  717 attggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaacccaataatgttggtcgtgatagggtgtgttaacag 816  Q
    |||||| || ||||||| |||||| ||||| || | |||||| | | |||||||||||||||| ||||||| || |||||||||  ||||||||||| ||    
T  3157217 attggaccacctgctatcaggtttccgctatcgggacacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtgttaagag 3157118  T
Q  817 tc 818  Q
    ||    
T  3157117 tc 3157116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 831 - 895
Target Start/End: Complemental strand, 3157198 - 3157134
Alignment:
Q  831 ggtttccgttatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||| ||||| | || ||||  |||||||||| ||||||||||||||||||||||||||||    
T  3157198 ggtttccgctatcgggacacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtga 3157134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 857 - 909
Target Start/End: Complemental strand, 3157487 - 3157435
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtgaatgagtgtgctaag 909  Q
    |||||||||| |||||||||||||||||||||||||||| || ||||| ||||    
T  3157487 tttatgtccacgaaccaagcccaatagtgctggtcgtgagtgggtgtgttaag 3157435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 831 - 895
Target Start/End: Original strand, 39960087 - 39960151
Alignment:
Q  831 ggtttccgttatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||| |||||||  | ||||  |||||||||| ||||||||||||||||||||||||||||    
T  39960087 ggtttccgctatcgagctacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtga 39960151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 857 - 895
Target Start/End: Original strand, 8084283 - 8084321
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  8084283 tttatgtccacgaaccaagcccaatagtgctggtcgtga 8084321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 848 - 894
Target Start/End: Complemental strand, 15797180 - 15797134
Alignment:
Q  848 catccactgtttatgtccatgaaccaagcccaatagtgctggtcgtg 894  Q
    |||||||  |||||||||| |||||||||||||||||||||||||||    
T  15797180 catccaccatttatgtccacgaaccaagcccaatagtgctggtcgtg 15797134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 857 - 895
Target Start/End: Complemental strand, 20094723 - 20094685
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  20094723 tttatgtccacgaaccaagcccaatagtgctggtcgtga 20094685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 682 - 779
Target Start/End: Original strand, 7669495 - 7669592
Alignment:
Q  682 atttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaa 779  Q
    ||||||||||||||||||||||||||| |||||| ||||   || ||||||| |||||| | ||| ||   |||||| | | ||||||||||||||||    
T  7669495 atttttaagatggtatcaaagtctcttcaagatccattgagccacctgctatcaggtttccactatcggaccacccaccatttatgtccacgaaccaa 7669592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 831 - 895
Target Start/End: Complemental strand, 18004283 - 18004219
Alignment:
Q  831 ggtttccgttatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||| ||||| | || ||||  |||||||||| |||||||||| |||||||||||||||||    
T  18004283 ggtttccgctatcgggccacccaccatttatgtccacgaaccaagcctaatagtgctggtcgtga 18004219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 831 - 895
Target Start/End: Complemental strand, 35682970 - 35682906
Alignment:
Q  831 ggtttccgttatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||| ||||| | || ||||  |||||||||| ||||||||| ||||||||||||||||||    
T  35682970 ggtttccgctatcgggccacccaccatttatgtccacgaaccaagctcaatagtgctggtcgtga 35682906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 685 - 800
Target Start/End: Complemental strand, 35683021 - 35682906
Alignment:
Q  685 tttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaaccca 784  Q
    ||||| ||||||||| ||  |||  |||||| |||||  || |||||||||||||| ||||| || | |||||| | | |||||||||||||||| | ||    
T  35683021 tttaatatggtatcatagcatctccaagatccattgggccacctgctattaggtttccgctatcgggccacccaccatttatgtccacgaaccaagctca 35682922  T
Q  785 ataatgttggtcgtga 800  Q
    ||| || |||||||||    
T  35682921 atagtgctggtcgtga 35682906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 831 - 909
Target Start/End: Complemental strand, 5589929 - 5589851
Alignment:
Q  831 ggtttccgttatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtgaatgagtgtgctaag 909  Q
    |||||||| |||||  ||| ||||  |||||||||| ||||||||||||||| |||| |||||||| | ||||| ||||    
T  5589929 ggtttccgctatcggatcacccacaatttatgtccacgaaccaagcccaataatgctagtcgtgaacgggtgtgttaag 5589851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 857 - 895
Target Start/End: Original strand, 20301417 - 20301455
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||| | ||||||||||||||||||||||||||||    
T  20301417 tttatgtctacgaaccaagcccaatagtgctggtcgtga 20301455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 857 - 895
Target Start/End: Original strand, 21088049 - 21088087
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||| | ||||||||||||||||||||||||||||    
T  21088049 tttatgtctacgaaccaagcccaatagtgctggtcgtga 21088087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 857 - 895
Target Start/End: Original strand, 29006012 - 29006050
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    ||||||||||||| | |||||||||||||||||||||||    
T  29006012 tttatgtccatgagcgaagcccaatagtgctggtcgtga 29006050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 857 - 895
Target Start/End: Complemental strand, 39052700 - 39052662
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||||| |||||||||||||||||| |||||||||    
T  39052700 tttatgtccacgaaccaagcccaatagtgttggtcgtga 39052662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 857 - 895
Target Start/End: Complemental strand, 39052857 - 39052819
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||||| |||||||||||||||||| |||||||||    
T  39052857 tttatgtccacgaaccaagcccaatagtgttggtcgtga 39052819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 727 - 821
Target Start/End: Original strand, 39960078 - 39960171
Alignment:
Q  727 ctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaacccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    ||||||| |||||| ||||| ||||  ||||| | | |||||||||||||||| ||||||| || |||||||||  ||| ||||||| |||||||    
T  39960078 ctgctatcaggtttccgctatcgagctacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtga-ggggggtgttaagagtccca 39960171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 764 - 813
Target Start/End: Complemental strand, 5589901 - 5589852
Alignment:
Q  764 tatgtccacgaaccaaacccaataatgttggtcgtgatagggtgtgttaa 813  Q
    |||||||||||||||| |||||||||| | |||||||  |||||||||||    
T  5589901 tatgtccacgaaccaagcccaataatgctagtcgtgaacgggtgtgttaa 5589852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 832 - 909
Target Start/End: Complemental strand, 5932137 - 5932060
Alignment:
Q  832 gtttccgttatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtgaatgagtgtgctaag 909  Q
    ||||||||||||| | || ||||  |||||||| |  |||||||| ||||||||||||||||||| | ||||| ||||    
T  5932137 gtttccgttatcgggccacccaccatttatgtcgacaaaccaagcgcaatagtgctggtcgtgaaagggtgtgttaag 5932060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 728 - 813
Target Start/End: Original strand, 8716237 - 8716322
Alignment:
Q  728 tgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaacccaataatgttggtcgtgatagggtgtgttaa 813  Q
    ||||||||||||| ||||| || |||||| | | | ||||||||||||| ||||| |||| || ||||| |||  |||||||||||    
T  8716237 tgctattaggtttccgctatcgggtcaccgaccatttatgtccacgaacaaaacctaatactgctggtcatgacggggtgtgttaa 8716322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 2e-18; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 681 - 829
Target Start/End: Original strand, 6218279 - 6218427
Alignment:
Q  681 gatttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaa 780  Q
    ||||| ||||||||||||| || ||||  |||||| ||||||||| || |||| |||||| ||||| |  |||||||||| | ||||| || |||||||     
T  6218279 gatttctaagatggtatcagagcctctccaagatccattggatcacctactatcaggtttccgctatcaggtcacccatcatttatgtacaagaaccaag 6218378  T
Q  781 cccaataatgttggtcgtgatagggtgtgttaacagtcccatatcagat 829  Q
    ||||||| || |||||||||  ||||||||||| |||| || |||||||    
T  6218379 cccaatagtgctggtcgtgagggggtgtgttaagagtctcacatcagat 6218427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 681 - 800
Target Start/End: Complemental strand, 35819137 - 35819018
Alignment:
Q  681 gatttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaa 780  Q
    |||||||||||||| |||| ||||||| ||||||| |||||  || ||||||| |||||| ||||| || |||||||| | | ||||||||||||||||     
T  35819137 gatttttaagatggcatcagagtctctctaagatccattgggccacctgctatcaggtttccgctatcgggtcacccaccatttatgtccacgaaccaag 35819038  T
Q  781 cccaataatgttggtcgtga 800  Q
    ||||||| || |||| ||||    
T  35819037 cccaatagtgctggttgtga 35819018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 681 - 818
Target Start/End: Complemental strand, 28245770 - 28245633
Alignment:
Q  681 gatttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaa 780  Q
    ||||| ||| ||||||||| || ||||  |||||| |||||  || ||||||| |||||| ||||| || | |||||| | | ||||||||||||||||     
T  28245770 gatttctaatatggtatcagagcctctccaagatccattgggccacctgctatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaag 28245671  T
Q  781 cccaataatgttggtcgtgatagggtgtgttaacagtc 818  Q
    ||||||| || |||||||||| ||||||||||| ||||    
T  28245670 cccaatagtgctggtcgtgatggggtgtgttaagagtc 28245633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 851 - 895
Target Start/End: Complemental strand, 27634250 - 27634206
Alignment:
Q  851 ccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  27634250 ccactgtttatgtccacgaaccaagcccaatagtgctggtcgtga 27634206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 710 - 821
Target Start/End: Complemental strand, 5398425 - 5398315
Alignment:
Q  710 aagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaacccaataatgttggtcgtgatagggtgtg 809  Q
    |||||| | ||| ||||||||||| |||||| | ||| ||   |||||| | | |||||||||||||||| ||||||||||||||||||||  |||||||    
T  5398425 aagatccaatgggtcatctgctatcaggtttcccctatcggaccacccaccatttatgtccacgaaccaagcccaataatgttggtcgtga-ggggtgtg 5398327  T
Q  810 ttaacagtccca 821  Q
    |||| |||||||    
T  5398326 ttaagagtccca 5398315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 682 - 813
Target Start/End: Complemental strand, 35796985 - 35796854
Alignment:
Q  682 atttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaac 781  Q
    |||| ||||||||||||| || |||||  ||||| ||||||  | ||||||| |||||| ||||| || | |||||| | | ||| |||||||||||| |    
T  35796985 atttctaagatggtatcagagcctcttcgagatccattggactacctgctatcaggtttccgctatcgggccacccaccatttatctccacgaaccaagc 35796886  T
Q  782 ccaataatgttggtcgtgatagggtgtgttaa 813  Q
    |||||| || |||||||||  |||||||||||    
T  35796885 ccaatagtgctggtcgtgagggggtgtgttaa 35796854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 684 - 818
Target Start/End: Complemental strand, 21750283 - 21750149
Alignment:
Q  684 ttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaaccc 783  Q
    |||||||||||||||| || |||||||| ||  |||||||||  ||||||  | ||| ||| |  | |||| ||| ||| ||||||||||||||||| ||    
T  21750283 ttttaagatggtatcagagcctctttaaaattcattggatcacatgctatctgatttccgcaaatgggtcatccaccgtttatgtccacgaaccaaatcc 21750184  T
Q  784 aataatgttggtcgtgatagggtgtgttaacagtc 818  Q
    ||||||  |||||||||  ||||||||||| ||||    
T  21750183 aataatactggtcgtgagggggtgtgttaaaagtc 21750149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 682 - 771
Target Start/End: Original strand, 32002399 - 32002487
Alignment:
Q  682 atttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtcca 771  Q
    |||||||||||||||||| |  ||||  |||||||||||| ||||||||||| |||||| ||||| |||||||| || | ||||||||||    
T  32002399 atttttaagatggtatcagaacctctccaagatctattgg-tcatctgctatcaggtttccgctatcgagtcacgcaccatctatgtcca 32002487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 831 - 895
Target Start/End: Complemental strand, 28245715 - 28245651
Alignment:
Q  831 ggtttccgttatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||| ||||| | || ||||  |||||||||| ||||||||||||||||||||||||||||    
T  28245715 ggtttccgctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtga 28245651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 831 - 895
Target Start/End: Original strand, 35788790 - 35788854
Alignment:
Q  831 ggtttccgttatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||||||||  | || ||||  |||||||||| ||||||||||||||||||||||||||||    
T  35788790 ggtttccgttatcaggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtga 35788854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 831 - 895
Target Start/End: Complemental strand, 35819082 - 35819018
Alignment:
Q  831 ggtttccgttatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||| ||||| |||| ||||  |||||||||| ||||||||||||||||||||||| ||||    
T  35819082 ggtttccgctatcgggtcacccaccatttatgtccacgaaccaagcccaatagtgctggttgtga 35819018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 831 - 895
Target Start/End: Complemental strand, 50543519 - 50543455
Alignment:
Q  831 ggtttccgttatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||||||||| | || ||||  |||||||||| |||||||||||||||||| |||||||||    
T  50543519 ggtttccgttatcgggccacccaccatttatgtccacgaaccaagcccaatagtgttggtcgtga 50543455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 681 - 813
Target Start/End: Complemental strand, 50543576 - 50543442
Alignment:
Q  681 gatttttaagatggtatcaaagtctctttaagatc--tattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaacca 778  Q
    ||||| ||||||| ||||| || ||||  ||||||  |||| || || ||||||| |||||| || || || | |||||| | | |||||||||||||||    
T  50543576 gatttctaagatgatatcagagcctctccaagatccatatttgaccacctgctatcaggtttccgttatcgggccacccaccatttatgtccacgaacca 50543477  T
Q  779 aacccaataatgttggtcgtgatagggtgtgttaa 813  Q
    | ||||||| ||||||||||||  |||||||||||    
T  50543476 agcccaatagtgttggtcgtgagggggtgtgttaa 50543442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 680 - 800
Target Start/End: Original strand, 4645716 - 4645836
Alignment:
Q  680 tgatttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaa 779  Q
    |||||| |||||| |||||| || ||||  |||||| ||||| ||| ||||||| |||||| ||||| || | |||||| |   |||||||||||| |||    
T  4645716 tgatttataagatagtatcagagcctctcaaagatccattgggtcacctgctatcaggtttccgctatcgggccacccaccaattatgtccacgaatcaa 4645815  T
Q  780 acccaataatgttggtcgtga 800  Q
     ||||| | ||||||||||||    
T  4645816 gcccaaaagtgttggtcgtga 4645836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 831 - 895
Target Start/End: Complemental strand, 35796931 - 35796867
Alignment:
Q  831 ggtttccgttatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||| ||||| | || ||||  ||||| |||| ||||||||||||||||||||||||||||    
T  35796931 ggtttccgctatcgggccacccaccatttatctccacgaaccaagcccaatagtgctggtcgtga 35796867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 682 - 829
Target Start/End: Complemental strand, 11036754 - 11036607
Alignment:
Q  682 atttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaac 781  Q
    |||||||||||||||||| || | || ||||||| |||||  || || ||||||||||| ||||| |  | |||||| | |  ||||||| ||||||| |    
T  11036754 atttttaagatggtatcagagccactctaagatccattgggccacctactattaggtttccgctatcaggccacccaccattaatgtccatgaaccaagc 11036655  T
Q  782 ccaataatgttggtcgtgatagggtgtgttaacagtcccatatcagat 829  Q
     ||||| ||  ||||||||  || |||||||| ||||||| |||||||    
T  11036654 tcaatattgcaggtcgtgaggggttgtgttaagagtcccaaatcagat 11036607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 681 - 828
Target Start/End: Complemental strand, 40717450 - 40717303
Alignment:
Q  681 gatttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaa 780  Q
    ||||| ||||||||||||| || ||||  || ||| |||||  || |||| || |||||| ||||| ||   |||||| | | ||||||||| ||||||     
T  40717450 gatttctaagatggtatcagagcctctccaatatccattgggccacctgccatcaggtttccgctatcggaccacccaccatttatgtccacaaaccaag 40717351  T
Q  781 cccaataatgttggtcgtgatagggtgtgttaacagtcccatatcaga 828  Q
    || |||| || |||||||||  ||||||||||| ||||||| ||||||    
T  40717350 cctaatagtgctggtcgtgagggggtgtgttaagagtcccacatcaga 40717303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 727 - 821
Target Start/End: Complemental strand, 5398673 - 5398579
Alignment:
Q  727 ctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaacccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    ||||||| |||||| ||||| ||   |||||| | | |||||||||||||||| || |||| || |||||||||  ||||||||||| |||||||    
T  5398673 ctgctatcaggtttccgctatcggaccacccaccatttatgtccacgaaccaagccaaatagtgctggtcgtgagggggtgtgttaagagtccca 5398579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 857 - 895
Target Start/End: Complemental strand, 5398638 - 5398600
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  5398638 tttatgtccacgaaccaagccaaatagtgctggtcgtga 5398600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 857 - 895
Target Start/End: Original strand, 6218360 - 6218398
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  6218360 tttatgtacaagaaccaagcccaatagtgctggtcgtga 6218398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 857 - 895
Target Start/End: Complemental strand, 21646430 - 21646392
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    ||||||||||||||||||| ||||||||| |||||||||    
T  21646430 tttatgtccatgaaccaagtccaatagtgttggtcgtga 21646392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 691 - 821
Target Start/End: Complemental strand, 27634315 - 27634185
Alignment:
Q  691 atggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaacccaataatg 790  Q
    ||||||||| || ||||  |||||| |||||| ||  |||||| ||||||  |||| ||   ||||||  || |||||||||||||||| ||||||| ||    
T  27634315 atggtatcagagcctctccaagatccattggaccacttgctatcaggtttctgctatcggaccacccactgtttatgtccacgaaccaagcccaatagtg 27634216  T
Q  791 ttggtcgtgatagggtgtgttaacagtccca 821  Q
     |||||||||  ||| ||||||| |||||||    
T  27634215 ctggtcgtgagggggggtgttaagagtccca 27634185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 751 - 813
Target Start/End: Original strand, 43743129 - 43743191
Alignment:
Q  751 gtcacccatcgtctatgtccacgaaccaaacccaataatgttggtcgtgatagggtgtgttaa 813  Q
    ||||| |||| | ||||||||||||||||||||||||||| |||| ||||  | |||||||||    
T  43743129 gtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaa 43743191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 857 - 895
Target Start/End: Original strand, 52559725 - 52559763
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||||| ||||||||||||||||||||||| ||||    
T  52559725 tttatgtccacgaaccaagcccaatagtgctggttgtga 52559763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 2e-18; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 681 - 821
Target Start/End: Original strand, 2029844 - 2029984
Alignment:
Q  681 gatttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaa 780  Q
    ||||| ||||||||||||| || ||||  |||||| |||||  || |||||||||||||| ||||| ||   |||||| | | ||||||||||||||||     
T  2029844 gatttctaagatggtatcagagcctctccaagatccattgggccacctgctattaggtttccgctatcggaccacccaccatttatgtccacgaaccaag 2029943  T
Q  781 cccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    ||||||| || |||||||||  ||||||||||| |||||||    
T  2029944 cccaatagtgctggtcgtgagggggtgtgttaagagtccca 2029984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 681 - 821
Target Start/End: Original strand, 16419342 - 16419482
Alignment:
Q  681 gatttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaa 780  Q
    ||||| ||||||||||||| || ||||  |||||| |||||  || ||||||| |||||| ||||| |||| |||||| | | ||||||||||||||||     
T  16419342 gatttctaagatggtatcagagcctctccaagatccattgggccacctgctatcaggtttccgctatcgagccacccaccatttatgtccacgaaccaag 16419441  T
Q  781 cccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    | ||||| || |||||||||  ||||||||||| |||||||    
T  16419442 ctcaatagtgctggtcgtgagggggtgtgttaagagtccca 16419482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 681 - 821
Target Start/End: Complemental strand, 33606298 - 33606158
Alignment:
Q  681 gatttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaa 780  Q
    ||||| ||||||| |||||||||||||| |||||||||||| |||  |||||| |||||| ||||| |  | |||||| | | ||||||||||||||||     
T  33606298 gatttctaagatgatatcaaagtctcttcaagatctattgggtcacttgctatcaggtttccgctatcaggccacccaccatttatgtccacgaaccaag 33606199  T
Q  781 cccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    || |||| || |||||||||   |||||||||| |||||||    
T  33606198 cctaatagtgatggtcgtgaggtggtgtgttaagagtccca 33606158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 681 - 821
Target Start/End: Complemental strand, 15124792 - 15124652
Alignment:
Q  681 gatttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaa 780  Q
    ||||| ||||||||||||| |||||||  |||||| |||||| || ||||||| ||||||||| || || |||| ||| | | ||||||||||||||||     
T  15124792 gatttctaagatggtatcagagtctctccaagatccattggaccacctgctatcaggttttcgttatcgggtcatccaccatttatgtccacgaaccaag 15124693  T
Q  781 cccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
     |||||| || |||| ||||  || |||||||| |||||||    
T  15124692 tccaatagtgctggttgtgaggggatgtgttaagagtccca 15124652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 691 - 819
Target Start/End: Original strand, 16533397 - 16533525
Alignment:
Q  691 atggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaacccaataatg 790  Q
    ||||||||| || ||||| |||||| |||||   | ||||||| |||||||||||| || | |||||| | | ||||||||||||||||  |||||| ||    
T  16533397 atggtatcagagcctcttcaagatccattgggctacctgctatcaggttttcgctatcgggccacccaccatttatgtccacgaaccaaggccaatagtg 16533496  T
Q  791 ttggtcgtgatagggtgtgttaacagtcc 819  Q
     ||||||||| |||||||||||| |||||    
T  16533497 ctggtcgtgagagggtgtgttaagagtcc 16533525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 691 - 818
Target Start/End: Complemental strand, 44404162 - 44404033
Alignment:
Q  691 atggtatcaa-agtctctttaagatctattggatcatctgctattaggttttcgc-tagcgagtcacccatcgtctatgtccacgaaccaaacccaataa 788  Q
    |||||||||| |||||||  |||||| |||||| || ||||||| |||||| ||| || || ||||||||   | |||||||| ||||||| |||||||     
T  44404162 atggtatcaagagtctctccaagatccattggaccacctgctatcaggtttccgcctatcgggtcacccactatttatgtccatgaaccaagcccaatag 44404063  T
Q  789 tgttggtcgtgatagggtgtgttaacagtc 818  Q
    ||||||||||||| ||||||||||| ||||    
T  44404062 tgttggtcgtgatggggtgtgttaagagtc 44404033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 831 - 895
Target Start/End: Complemental strand, 5711628 - 5711564
Alignment:
Q  831 ggtttccgttatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||||||||| | || ||||  |||||||||| ||||||||||||||||||||||||||||    
T  5711628 ggtttccgttatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtga 5711564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 710 - 821
Target Start/End: Complemental strand, 37812483 - 37812372
Alignment:
Q  710 aagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaacccaataatgttggtcgtgatagggtgtg 809  Q
    |||||| |||||  || ||||||| ||||||  |||| || | ||||||  || |||||||||||||||| |||||||||| |||||||||  |||||||    
T  37812483 aagatccattgggccacctgctatcaggtttctgctatcgggccacccactgtttatgtccacgaaccaagcccaataatgctggtcgtgagggggtgtg 37812384  T
Q  810 ttaacagtccca 821  Q
    |||| |||||||    
T  37812383 ttaagagtccca 37812372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 840 - 895
Target Start/End: Complemental strand, 44404106 - 44404051
Alignment:
Q  840 tatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    ||||| |||| ||||| ||||||||||||||||||||||||||||| |||||||||    
T  44404106 tatcgggtcacccactatttatgtccatgaaccaagcccaatagtgttggtcgtga 44404051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 831 - 895
Target Start/End: Complemental strand, 14466364 - 14466300
Alignment:
Q  831 ggtttccgttatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||| ||||| | || ||||  |||||||||| ||||||||||||||||||||||||||||    
T  14466364 ggtttccgctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtga 14466300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 831 - 895
Target Start/End: Complemental strand, 15124737 - 15124673
Alignment:
Q  831 ggtttccgttatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    ||||| |||||||| |||||||||  |||||||||| |||||||| |||||||||||||| ||||    
T  15124737 ggttttcgttatcgggtcatccaccatttatgtccacgaaccaagtccaatagtgctggttgtga 15124673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 831 - 895
Target Start/End: Original strand, 16419397 - 16419461
Alignment:
Q  831 ggtttccgttatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||| ||||||| || ||||  |||||||||| ||||||||| ||||||||||||||||||    
T  16419397 ggtttccgctatcgagccacccaccatttatgtccacgaaccaagctcaatagtgctggtcgtga 16419461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 851 - 895
Target Start/End: Complemental strand, 37812437 - 37812393
Alignment:
Q  851 ccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||    
T  37812437 ccactgtttatgtccacgaaccaagcccaataatgctggtcgtga 37812393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 851 - 895
Target Start/End: Complemental strand, 40149170 - 40149126
Alignment:
Q  851 ccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||    
T  40149170 ccactatttatgtccacgaaccaagcccaatagtgctggtcgtga 40149126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 718 - 821
Target Start/End: Complemental strand, 5711646 - 5711543
Alignment:
Q  718 ttggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaacccaataatgttggtcgtgatagggtgtgttaacagt 817  Q
    ||||| || ||||||| |||||| || || || | |||||| | | |||||||||||||||| ||||||| || |||||||||  ||||||||||| |||    
T  5711646 ttggaccacctgctatcaggtttccgttatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtgttaagagt 5711547  T
Q  818 ccca 821  Q
    ||||    
T  5711546 ccca 5711543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 682 - 813
Target Start/End: Complemental strand, 14466418 - 14466287
Alignment:
Q  682 atttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaac 781  Q
    |||| ||||||||||||| || ||||  |||||| |||||  ||  || ||| |||||| ||||| || | |||||| | | |||||||||||||||| |    
T  14466418 atttctaagatggtatcagagcctctccaagatccattgggccacttgttatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaagc 14466319  T
Q  782 ccaataatgttggtcgtgatagggtgtgttaa 813  Q
    |||||| || |||||||||  |||||||||||    
T  14466318 ccaatagtgctggtcgtgagggggtgtgttaa 14466287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 857 - 895
Target Start/End: Original strand, 2029925 - 2029963
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  2029925 tttatgtccacgaaccaagcccaatagtgctggtcgtga 2029963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 682 - 818
Target Start/End: Complemental strand, 36352167 - 36352033
Alignment:
Q  682 atttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaac 781  Q
    |||||||||||||||| | |||||||| |||||| || ||  || ||| ||| |||||| || || || | |||||| | | |||  |||||||| || |    
T  36352167 atttttaagatggtattagagtctcttcaagatccatcgggccacctgttatcaggtttccgttatcgggccacccaccatttat--ccacgaacgaagc 36352070  T
Q  782 ccaataatgttggtcgtgatagggtgtgttaacagtc 818  Q
    |||||| ||||||||||||| ||||||||||| ||||    
T  36352069 ccaatagtgttggtcgtgatggggtgtgttaagagtc 36352033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 748 - 800
Target Start/End: Complemental strand, 33381130 - 33381078
Alignment:
Q  748 cgagtcacccatcgtctatgtccacgaaccaaacccaataatgttggtcgtga 800  Q
    ||||||||||||| | ||||||||||||||||||||| || || |||||||||    
T  33381130 cgagtcacccatcatttatgtccacgaaccaaacccagtagtgctggtcgtga 33381078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 680 - 790
Target Start/End: Original strand, 7748068 - 7748179
Alignment:
Q  680 tgatttttaagatggtatcaaagtct-ctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaacca 778  Q
    ||||||||||||| |||||||||||| || ||| |||  |||| ||| ||||||| ||||||||| || ||||||| ||||| | ||| || | | ||||    
T  7748068 tgatttttaagattgtatcaaagtctactctaaaatcatttgggtcacctgctatcaggttttcgttatcgagtcatccatcatttatatctatgcacca 7748167  T
Q  779 aacccaataatg 790  Q
    || |||||||||    
T  7748168 aatccaataatg 7748179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 727 - 818
Target Start/End: Complemental strand, 17525297 - 17525206
Alignment:
Q  727 ctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaacccaataatgttggtcgtgatagggtgtgttaacagtc 818  Q
    ||||||| |||| | ||||| || | |||||| | | |||||||||||||||| ||||||| || |||||||||  ||||||||||| ||||    
T  17525297 ctgctatcaggtatccgctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgatggtcgtgagtgggtgtgttaaaagtc 17525206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 857 - 904
Target Start/End: Complemental strand, 17525262 - 17525215
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtgaatgagtgtg 904  Q
    |||||||||| |||||||||||||||||| ||||||||| || |||||    
T  17525262 tttatgtccacgaaccaagcccaatagtgatggtcgtgagtgggtgtg 17525215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 681 - 821
Target Start/End: Complemental strand, 93363 - 93226
Alignment:
Q  681 gatttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaa 780  Q
    ||||||||||||||||||| || ||||  |||||| |||||  || ||||||| || ||| || || || | |||||| |   |||||||||||| |||     
T  93363 gatttttaagatggtatcagagcctctccaagatccattgggccacctgctatcagctttccgttatcgggccacccaccaattatgtccacgaatcaag 93264  T
Q  781 cccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    ||||||| || ||||||||   ||||||||||| |||||||    
T  93263 cccaatagtgctggtcgtg---gggtgtgttaagagtccca 93226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 857 - 895
Target Start/End: Original strand, 16533468 - 16533506
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  16533468 tttatgtccacgaaccaaggccaatagtgctggtcgtga 16533506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 751 - 813
Target Start/End: Original strand, 36063291 - 36063353
Alignment:
Q  751 gtcacccatcgtctatgtccacgaaccaaacccaataatgttggtcgtgatagggtgtgttaa 813  Q
    ||||| |||| | ||||||||||||||||||| |||| ||||| |||| | ||||||||||||    
T  36063291 gtcactcatcatatatgtccacgaaccaaacctaatagtgttgatcgtaaaagggtgtgttaa 36063353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 833 - 894
Target Start/End: Complemental strand, 93306 - 93245
Alignment:
Q  833 tttccgttatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtg 894  Q
    |||||||||||| | || ||||   ||||||||| ||| |||||||||||||||||||||||    
T  93306 tttccgttatcgggccacccaccaattatgtccacgaatcaagcccaatagtgctggtcgtg 93245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 682 - 821
Target Start/End: Original strand, 13353277 - 13353416
Alignment:
Q  682 atttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaac 781  Q
    |||| ||||||||||||| || ||||  |||||| |||||  || ||| ||| |||||| ||||| || | |||||| | | |||||||||||||||| |    
T  13353277 atttctaagatggtatcagagcctctccaagatccattgggccacctgttatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaagc 13353376  T
Q  782 ccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    |||||| || |||||||||  ||||||||||| |||||||    
T  13353377 ccaatagtgctggtcgtgagggggtgtgttaagagtccca 13353416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 682 - 821
Target Start/End: Original strand, 33796402 - 33796541
Alignment:
Q  682 atttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaac 781  Q
    |||| ||||||||||||| || ||||  |||||| |||||  || ||| ||| |||||| ||||| || | |||||| | | |||||||||||||||| |    
T  33796402 atttctaagatggtatcagagcctctccaagatccattgggccacctgttatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaagc 33796501  T
Q  782 ccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    |||||| || |||||||||  ||||||||||| |||||||    
T  33796502 ccaatagtgctggtcgtgagggggtgtgttaagagtccca 33796541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 831 - 895
Target Start/End: Complemental strand, 4868766 - 4868702
Alignment:
Q  831 ggtttccgttatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||||||||| | || ||||  |||||||||| ||||||||||||||||||||||||||||    
T  4868766 ggtttccgttatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtga 4868702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 681 - 821
Target Start/End: Complemental strand, 12330188 - 12330048
Alignment:
Q  681 gatttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaa 780  Q
    ||||| ||| ||||||||| || ||||  |||||| |||||  || ||||||| |||||| ||| | || | |||||| | | ||||||||||||||||     
T  12330188 gatttctaatatggtatcagagcctctccaagatccattgggccacctgctatcaggtttccgccatcgggccacccaccatttatgtccacgaaccaag 12330089  T
Q  781 cccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    |||||| ||| |||||||||  ||||||||||| |||||||    
T  12330088 cccaattatgctggtcgtgagggggtgtgttaagagtccca 12330048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 681 - 777
Target Start/End: Complemental strand, 30849411 - 30849315
Alignment:
Q  681 gatttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaacc 777  Q
    ||||| ||||||| |||||||||| |||||||||| |||||| || |||||||||||||| |||||  ||| ||| || | | ||||||||||||||    
T  30849411 gatttctaagatgatatcaaagtccctttaagatccattggaccacctgctattaggtttccgctaatgagccactcaccatttatgtccacgaacc 30849315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 682 - 821
Target Start/End: Original strand, 33494615 - 33494754
Alignment:
Q  682 atttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaac 781  Q
    |||| ||||||||||||| |  |||||  ||||| ||||| ||| ||||||| |||||| | ||| || | |||||| ||| ||||| |||||||||| |    
T  33494615 atttctaagatggtatcagaacctcttcgagatccattgggtcacctgctatcaggtttccactatcgggccacccaccgtttatgttcacgaaccaagc 33494714  T
Q  782 ccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    |||||| || |||||||||   |||||||||| |||||||    
T  33494715 ccaatagtgctggtcgtgagttggtgtgttaagagtccca 33494754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 688 - 818
Target Start/End: Complemental strand, 6542945 - 6542815
Alignment:
Q  688 aagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaacccaata 787  Q
    |||||||||||| || ||||| |||||| ||||| |||  |||||| |||||| || || || |||||||| | | ||||||||||||||||  ||||||    
T  6542945 aagatggtatcagagcctcttcaagatccattgggtcacttgctatcaggtttccgttatcgggtcacccaccatttatgtccacgaaccaagtccaata 6542846  T
Q  788 atgttggtcgtgatagggtgtgttaacagtc 818  Q
      |||||||||||  | ||||||||| ||||    
T  6542845 tcgttggtcgtgagggtgtgtgttaagagtc 6542815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 691 - 821
Target Start/End: Complemental strand, 17147894 - 17147764
Alignment:
Q  691 atggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaacccaataatg 790  Q
    ||||||||| || ||||  || ||| ||||| ||| ||||||| |||||| ||||| |  |||||||| | | |||||||||||||||| ||||||| ||    
T  17147894 atggtatcagagcctctccaacatccattgggtcacctgctatcaggtttccgctatcaggtcacccaccatttatgtccacgaaccaagcccaatagtg 17147795  T
Q  791 ttggtcgtgatagggtgtgttaacagtccca 821  Q
     |||| ||||  ||||||||||| |||||||    
T  17147794 ctggttgtgagggggtgtgttaagagtccca 17147764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 681 - 818
Target Start/End: Complemental strand, 6400863 - 6400727
Alignment:
Q  681 gatttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaa 780  Q
    |||||||||||||||||||||| ||||  || |||||| || ||| ||||||| ||||||  |||| ||   |||||| | | ||||||||||||||||     
T  6400863 gatttttaagatggtatcaaagcctctccaaaatctatggg-tcacctgctatcaggtttctgctatcggaccacccaccatttatgtccacgaaccaag 6400765  T
Q  781 cccaataatgttggtcgtgatagggtgtgttaacagtc 818  Q
    ||||||| || |||||||||  ||| ||||||| ||||    
T  6400764 cccaatagtgctggtcgtgagggggggtgttaagagtc 6400727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 831 - 895
Target Start/End: Original strand, 3680142 - 3680206
Alignment:
Q  831 ggtttccgttatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||| ||||| |||||||||  ||||||||||  ||||||||||||||||| |||||||||    
T  3680142 ggtttccgctatcgggtcatccaccatttatgtccacaaaccaagcccaatagtgttggtcgtga 3680206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 831 - 895
Target Start/End: Original strand, 13353331 - 13353395
Alignment:
Q  831 ggtttccgttatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||| ||||| | || ||||  |||||||||| ||||||||||||||||||||||||||||    
T  13353331 ggtttccgctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtga 13353395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 831 - 895
Target Start/End: Original strand, 33796456 - 33796520
Alignment:
Q  831 ggtttccgttatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||| ||||| | || ||||  |||||||||| ||||||||||||||||||||||||||||    
T  33796456 ggtttccgctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtga 33796520  T

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Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 682 - 821
Target Start/End: Original strand, 3680088 - 3680226
Alignment:
Q  682 atttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaac 781  Q
    |||| ||||||||||||| |  ||||  || ||| || || ||| |||||||||||||| ||||| || |||| ||| | | ||||||||| |||||| |    
T  3680088 atttctaagatggtatcagaccctctccaaaatccatcgggtcacctgctattaggtttccgctatcgggtcatccaccatttatgtccacaaaccaagc 3680187  T
Q  782 ccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    |||||| ||||||||||||  ||| ||||||| |||||||    
T  3680188 ccaatagtgttggtcgtga-ggggggtgttaagagtccca 3680226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 727 - 821
Target Start/End: Complemental strand, 4868775 - 4868681
Alignment:
Q  727 ctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaacccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    ||||||| |||||| || || || | |||||| | | |||||||||||||||| ||||||| || |||||||||  ||||||||||| |||||||    
T  4868775 ctgctatcaggtttccgttatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtgttaagagtccca 4868681  T

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Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 857 - 895
Target Start/End: Complemental strand, 6400783 - 6400745
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  6400783 tttatgtccacgaaccaagcccaatagtgctggtcgtga 6400745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 708 - 813
Target Start/End: Original strand, 20830615 - 20830720
Alignment:
Q  708 ttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaacccaataatgttggtcgtgatagggtg 807  Q
    |||||||| ||| | | ||||||||| ||||||| |||| ||  ||||||||| | ||| |||||||||||| |||||||||  ||||||||| || ||     
T  20830615 ttaagatccattaggttatctgctatcaggtttttgctatcggatcacccatcatttatttccacgaaccaagcccaataatactggtcgtgagagtgta 20830714  T
Q  808 tgttaa 813  Q
    ||||||    
T  20830715 tgttaa 20830720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 764 - 821
Target Start/End: Original strand, 34345555 - 34345612
Alignment:
Q  764 tatgtccacgaaccaaacccaataatgttggtcgtgatagggtgtgttaacagtccca 821  Q
    |||||||||||||||||| ||||| |||||||| |||  ||||||||||| |||||||    
T  34345555 tatgtccacgaaccaaacacaatagtgttggtcatgagggggtgtgttaagagtccca 34345612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 831 - 895
Target Start/End: Complemental strand, 17147849 - 17147785
Alignment:
Q  831 ggtttccgttatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||| ||||  |||| ||||  |||||||||| ||||||||||||||||||||||| ||||    
T  17147849 ggtttccgctatcaggtcacccaccatttatgtccacgaaccaagcccaatagtgctggttgtga 17147785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 851 - 895
Target Start/End: Original strand, 33494689 - 33494733
Alignment:
Q  851 ccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||| |||||||| || ||||||||||||||||||||||||||||    
T  33494689 ccaccgtttatgttcacgaaccaagcccaatagtgctggtcgtga 33494733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 779
Target Start/End: Complemental strand, 7638828 - 7638759
Alignment:
Q  710 aagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaa 779  Q
    |||||||||||||||| ||||||| |||||| ||||| |   ||||||||| | |||||| |||||||||    
T  7638828 aagatctattggatcacctgctatcaggtttccgctatcagatcacccatcatttatgtctacgaaccaa 7638759  T

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Target: scaffold0366 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 691 - 818
Target Start/End: Original strand, 14488 - 14617
Alignment:
Q  691 atggtatcaa-agtctctttaagatctattggatcatctgctattaggttttcgc-tagcgagtcacccatcgtctatgtccacgaaccaaacccaataa 788  Q
    |||||||||| |||||||  |||||| |||||| || ||||||| |||||| ||| || || ||||||||   | |||||||| ||||||| |||||||     
T  14488 atggtatcaagagtctctccaagatccattggaccacctgctatcaggtttccgcctatcgggtcacccactatttatgtccatgaaccaagcccaatag 14587  T
Q  789 tgttggtcgtgatagggtgtgttaacagtc 818  Q
    ||||||||||||| ||||||||||| ||||    
T  14588 tgttggtcgtgatggggtgtgttaagagtc 14617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 840 - 895
Target Start/End: Original strand, 14544 - 14599
Alignment:
Q  840 tatcgagtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    ||||| |||| ||||| ||||||||||||||||||||||||||||| |||||||||    
T  14544 tatcgggtcacccactatttatgtccatgaaccaagcccaatagtgttggtcgtga 14599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 691 - 818
Target Start/End: Original strand, 10822 - 10951
Alignment:
Q  691 atggtatcaa-agtctctttaagatctattggatcatctgctattaggttttcgc-tagcgagtcacccatcgtctatgtccacgaaccaaacccaataa 788  Q
    |||||||||| |||||||  |||||| |||||| || ||||||| |||||| ||| ||  | ||||||||   | |||||||| ||||||| |||||||     
T  10822 atggtatcaagagtctctccaagatccattggaccacctgctatcaggtttccgcctattgggtcacccactatttatgtccatgaaccaagcccaatag 10921  T
Q  789 tgttggtcgtgatagggtgtgttaacagtc 818  Q
    ||||||||||||| ||||||||||| ||||    
T  10922 tgttggtcgtgatggggtgtgttaagagtc 10951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 846 - 895
Target Start/End: Original strand, 10884 - 10933
Alignment:
Q  846 gtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||| ||||| ||||||||||||||||||||||||||||| |||||||||    
T  10884 gtcacccactatttatgtccatgaaccaagcccaatagtgttggtcgtga 10933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 681 - 817
Target Start/End: Original strand, 5730 - 5866
Alignment:
Q  681 gatttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaa 780  Q
    ||||| ||||||||||||| || ||||| || ||| |||||  || ||||||| |||||| || || ||| ||||||| ||| |||| |||||||||||     
T  5730 gatttctaagatggtatcagagcctcttcaaaatccattgggccacctgctatcaggtttccgttatcgaatcacccaccgtttatgcccacgaaccaag 5829  T
Q  781 ccc-aataatgttggtcgtgatagggtgtgttaacagt 817  Q
    ||| ||||||| |||||||||  |||||||||||||||    
T  5830 cccaaataatgctggtcgtga-ggggtgtgttaacagt 5866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 831 - 895
Target Start/End: Original strand, 5785 - 5850
Alignment:
Q  831 ggtttccgttatcgagtcatccactgtttatgtccatgaaccaagccc-aatagtgctggtcgtga 895  Q
    ||||||||||||||| ||| |||| ||||||| ||| ||||||||||| |||| ||||||||||||    
T  5785 ggtttccgttatcgaatcacccaccgtttatgcccacgaaccaagcccaaataatgctggtcgtga 5850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 857 - 895
Target Start/End: Original strand, 81997 - 82035
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||||||||||||||||||||||||||||||||||    
T  81997 tttatgtccatgaaccaagcccaatagtgctggtcgtga 82035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 764 - 828
Target Start/End: Original strand, 81999 - 82063
Alignment:
Q  764 tatgtccacgaaccaaacccaataatgttggtcgtgatagggtgtgttaacagtcccatatcaga 828  Q
    |||||||| ||||||| ||||||| || |||||||||  ||||||||||| ||||||| ||||||    
T  81999 tatgtccatgaaccaagcccaatagtgctggtcgtgagggggtgtgttaagagtcccacatcaga 82063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 691 - 818
Target Start/End: Original strand, 13181 - 13310
Alignment:
Q  691 atggtatcaa-agtctctttaagatctattggatcatctgctattaggttttcgc-tagcgagtcacccatcgtctatgtccacgaaccaaacccaataa 788  Q
    |||||||||| |||||||  |||||| |||||| || ||||||| |||||| ||| ||  | ||||||||   | |||||||| ||||||| |||||||     
T  13181 atggtatcaagagtctctccaagatccattggaccacctgctatcaggtttccgcctattgggtcacccactatttatgtccatgaaccaagcccaatag 13280  T
Q  789 tgttggtcgtgatagggtgtgttaacagtc 818  Q
    ||||||||||||| ||||||||||| ||||    
T  13281 tgttggtcgtgatggggtgtgttaagagtc 13310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 846 - 895
Target Start/End: Original strand, 13243 - 13292
Alignment:
Q  846 gtcatccactgtttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||| ||||| ||||||||||||||||||||||||||||| |||||||||    
T  13243 gtcacccactatttatgtccatgaaccaagcccaatagtgttggtcgtga 13292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0692 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 681 - 811
Target Start/End: Complemental strand, 5763 - 5633
Alignment:
Q  681 gatttttaagatggtatcaaagtctctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaaa 780  Q
    ||||| ||||||||||||| || ||||  |||||| ||||   || ||||||| |||||| ||||| ||   |||||| | | ||||||||||||||||     
T  5763 gatttctaagatggtatcagagcctctccaagatccattgagccacctgctatcaggtttccgctatcggaccacccaccatttatgtccacgaaccaag 5664  T
Q  781 cccaataatgttggtcgtgatagggtgtgtt 811  Q
    ||||||| || |||||||||  |||||||||    
T  5663 cccaatagtgctggtcgtgagggggtgtgtt 5633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0692; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 857 - 895
Target Start/End: Complemental strand, 5682 - 5644
Alignment:
Q  857 tttatgtccatgaaccaagcccaatagtgctggtcgtga 895  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  5682 tttatgtccacgaaccaagcccaatagtgctggtcgtga 5644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0542 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0542
Description:

Target: scaffold0542; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 705 - 779
Target Start/End: Original strand, 5728 - 5802
Alignment:
Q  705 tctttaagatctattggatcatctgctattaggttttcgctagcgagtcacccatcgtctatgtccacgaaccaa 779  Q
    |||| |||||||||||| ||| ||||||| || ||||||||| |||| |||| ||| | ||||||||||||||||    
T  5728 tcttcaagatctattgggtcacctgctatcagattttcgctatcgagccacctatcatttatgtccacgaaccaa 5802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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