View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13226_low_11 (Length: 333)

Name: NF13226_low_11
Description: NF13226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13226_low_11
NF13226_low_11
[»] chr7 (3 HSPs)
chr7 (1-328)||(32122267-32122594)
chr7 (23-90)||(47451015-47451084)
chr7 (30-59)||(21182389-21182418)
[»] chr1 (2 HSPs)
chr1 (23-105)||(26631709-26631793)
chr1 (45-95)||(10313883-10313933)
[»] chr5 (2 HSPs)
chr5 (23-90)||(4445326-4445393)
chr5 (66-103)||(18433662-18433699)
[»] chr6 (1 HSPs)
chr6 (20-90)||(27897946-27898017)
[»] chr3 (1 HSPs)
chr3 (23-80)||(30790745-30790805)
[»] chr8 (1 HSPs)
chr8 (49-105)||(32230902-32230958)


Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 32122267 - 32122594
Alignment:
Q  1 tctcttacttttcgtctagtataacttgcacacatttaaaaaatacacaaaaatcaaagggcaccgtatttgacatcaaaattttgatgttaaaacataa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  32122267 tctcttacttttcgtctagtataacttgcacacatttaaaaaatacacaaaaatcaaagggcaccgtatttgacatcaaaattttgatgttaaaacatca 32122366  T
Q  101 tttctttttattttatcctgaaaagagtcaaatggcatgtgatgattcaccttcccataaagaatactacttccactgctagaacttaatattatgctaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32122367 tttctttttattttatcctgaaaagagtcaaatggcatgtgatgattcaccttcccataaagaatactacttccactgctagaacttaatattatgctaa 32122466  T
Q  201 tgcttcttttgaattggagtcaagagagtatgaaatttgaccctaaaccctaatttgttagtttgtgtatatgtatattcttttgcaaatgtgtgctttg 300  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32122467 tgcttcttttgaatcggagtcaagagagtatgaaatttgaccctaaaccctaatttgttagtttgtgtatatgtatattcttttgcaaatgtgtgctttg 32122566  T
Q  301 tcaactctaaacaaaaaattaccctatg 328  Q
    ||||||||||||||||||||||||||||    
T  32122567 tcaactctaaacaaaaaattaccctatg 32122594  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 47451015 - 47451084
Alignment:
Q  23 aacttgcacacatttaaaaaatacaca--aaaatcaaagggcaccgtatttgacatcaaaattttgatgt 90  Q
    |||||||||||| ||||||||||||||  ||||||||| | ||||||||||||||| |||||| ||||||    
T  47451015 aacttgcacacaattaaaaaatacacataaaaatcaaatgacaccgtatttgacattaaaattatgatgt 47451084  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 21182389 - 21182418
Alignment:
Q  30 acacatttaaaaaatacacaaaaatcaaag 59  Q
    ||||||||||||||||||||||||||||||    
T  21182389 acacatttaaaaaatacacaaaaatcaaag 21182418  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 26631709 - 26631793
Alignment:
Q  23 aacttgcacacatttaaaaaatacac--aaaaatcaaagggcaccgtatttgacatcaaaattttgatgttaaaacataatttct 105  Q
    ||||| ||||||||| ||||||||||  |||||||||| | |||| |||||||||||||||||| ||||| |||| || ||||||    
T  26631709 aacttacacacattttaaaaatacacgtaaaaatcaaaagacaccctatttgacatcaaaatttcgatgtcaaaatatcatttct 26631793  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 95
Target Start/End: Original strand, 10313883 - 10313933
Alignment:
Q  45 acacaaaaatcaaagggcaccgtatttgacatcaaaattttgatgttaaaa 95  Q
    |||||||||||||| | |||| |||||||||||||| ||||||||| ||||    
T  10313883 acacaaaaatcaaatgacaccatatttgacatcaaagttttgatgtcaaaa 10313933  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 4445393 - 4445326
Alignment:
Q  23 aacttgcacacatttaaaaaatacacaaaaatcaaagggcaccgtatttgacatcaaaattttgatgt 90  Q
    ||||| || |||||| ||||||||||| |||| | ||| ||||||||||||||||||||||| |||||    
T  4445393 aacttacaaacatttcaaaaatacacagaaataagaggacaccgtatttgacatcaaaatttcgatgt 4445326  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 18433699 - 18433662
Alignment:
Q  66 gtatttgacatcaaaattttgatgttaaaacataattt 103  Q
    |||||||||||||||||||||||||||||| |||||||    
T  18433699 gtatttgacatcaaaattttgatgttaaaatataattt 18433662  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 27898017 - 27897946
Alignment:
Q  20 tataacttgcacacatttaaaaa-atacacaaaaatcaaagggcaccgtatttgacatcaaaattttgatgt 90  Q
    ||||| || |||||||||||||| | ||| ||||||||||   ||||||||||||||||||||||| |||||    
T  27898017 tataatttacacacatttaaaaatacacataaaaatcaaaacacaccgtatttgacatcaaaatttagatgt 27897946  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 30790805 - 30790745
Alignment:
Q  23 aacttgcacacatttaaaaaatacac--aaaaatcaaagggcac-cgtatttgacatcaaa 80  Q
    ||||| ||||||||||||||||||||  |||| ||||||| ||| ||||||||||||||||    
T  30790805 aacttacacacatttaaaaaatacacataaaactcaaaggacactcgtatttgacatcaaa 30790745  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 32230902 - 32230958
Alignment:
Q  49 aaaaatcaaagggcaccgtatttgacatcaaaattttgatgttaaaacataatttct 105  Q
    ||||||||||||||||  |||||||||||||| |||| || | |||| |||||||||    
T  32230902 aaaaatcaaagggcacaatatttgacatcaaagttttaatatcaaaatataatttct 32230958  T

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