View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13226_low_12 (Length: 276)
Name: NF13226_low_12
Description: NF13226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13226_low_12 |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 276
Target Start/End: Complemental strand, 51278611 - 51278354
Alignment:
| Q |
19 |
tcttcaccattaggtcaaagaaagacttggcatcatcagtcttcccaactttaaccaacccatcaaccaatctattgtaaacagccaagttaggcctcaa |
118 |
Q |
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| T |
51278611 |
tcttcaccattaggtcaaagaaagacttggcatcatcagtcttcccaactttaaccaacccatcaaccaatctattgtaaacagccaagttaggcctcaa |
51278512 |
T |
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| Q |
119 |
acccgactccaccannnnnnngaaatagctagcagcgtcatcaggcctgttctctttgaaacaagtatccatcaacaagccataagtatactcatcatgg |
218 |
Q |
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| T |
51278511 |
acccgactccaccatttttttgaaatagctagcagcgtcatcaggcctgttctctttgaaacaagtatccatcaacaagccataagtatactcatcatgg |
51278412 |
T |
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| Q |
219 |
ttcactcctttgccctccatttctccataaacctcctcagcttccaaaatcatcccat |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51278411 |
ttcactcctttgccctccatttctccataaacctcctcagcttccaaaatcatcccat |
51278354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 276
Target Start/End: Complemental strand, 41618457 - 41618200
Alignment:
| Q |
19 |
tcttcaccattaggtcaaagaaagacttggcatcatcagtcttcccaactttaaccaacccatcaaccaatctattgtaaacagccaagttaggcctcaa |
118 |
Q |
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||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41618457 |
tcttcaccattaggtcaaagaaaaacttagcatcatcaatcttcccaactttaaccaacccatcaaccaacctattgtaaacagccaagttaggcctcaa |
41618358 |
T |
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| Q |
119 |
acccgactccaccannnnnnngaaatagctagcagcgtcatcaggcctgttctctttgaaacaagtatccatcaacaagccataagtatactcatcatgg |
218 |
Q |
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|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
41618357 |
acccgattccaccatttttttgaaatagctagcagcgtcatcaggcctgttctctttgaaacaagtatccatcaacaagccatatgtatactcatcaggg |
41618258 |
T |
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| Q |
219 |
ttcactcctttgccctccatttctccataaacctcctcagcttccaaaatcatcccat |
276 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41618257 |
tttactcctttgccctccatttctccataaacctcctcagcttccaaaatcatcccat |
41618200 |
T |
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