View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13226_low_15 (Length: 236)
Name: NF13226_low_15
Description: NF13226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13226_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 36005389 - 36005170
Alignment:
| Q |
1 |
gtttaacaatcggtgcgaaaggaaacgcgttgccaaatagatgacaaaggggtataagaaccgcagtgctgctgaaaggacactttaaagtaaaagagaa |
100 |
Q |
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| T |
36005389 |
gtttaacaatcggtgcgaaaggaaacgcgttgccaaagagatgacaaaggggtataagaatcgcagtgctgctgaaaggacactttaaagtaaaagagaa |
36005290 |
T |
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| Q |
101 |
gacttgcaaacagtgttgatcatgatatatggcgaacgaaatagcacttgctatttcagattttaatttaataatttatgtgactctttgatatgctata |
200 |
Q |
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| T |
36005289 |
gacttgcaaacagtgttgatcatgatatatggcgaacgaaatagcacttgctatttcagattttaatttaataatttatgtgactctttgatatgctata |
36005190 |
T |
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| Q |
201 |
tataatactatataacaatc |
220 |
Q |
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|||||||||||||| ||||| |
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| T |
36005189 |
tataatactatatagcaatc |
36005170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 43 - 170
Target Start/End: Complemental strand, 36026167 - 36026029
Alignment:
| Q |
43 |
gacaaaggggtataagaaccgcagtgctgctgaaaggacactttaaagtaaaagagaagacttgcaaacag-----------tgttgatcatgatatatg |
131 |
Q |
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||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
36026167 |
gacaaagggatataagaaccgcagtgctgctgaaaggccactttaaactaaaagagaagacttgcaaacagtgcataaaaaatgttgatcatgatatatg |
36026068 |
T |
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| Q |
132 |
gcgaacgaaatagcacttgctatttcagattttaattta |
170 |
Q |
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| T |
36026067 |
gcgaatgaaatatcacttactattttagattttaattta |
36026029 |
T |
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